Demosponge and sea anemone fibrillar collagen diversity reveals the early emergence of A/C clades and the maintenance of the modular structure of type V/XI collagens from sponge to human

Journal of Biological Chemistry

Volumn 283, Issue 42, 2008, Pages 28226-28235

  Exposito, Jean Yves ^a,b,c,d   Larroux, Claire ^e   Cluzel, Caroline ^a,b,c,d   Valcourt, Ulrich ^a,b,c,d   Lethias, Claire ^a,b,c,d   Degnan, Bernard M ^e  

^a INSTITUT DE BIOLOGIE ET CHIMIE DES PROTÉINES   (France)

^b UNIVERSITÉ DE LYON   (France)

^c UNIVERSITÉ LYON 1   (France)

^d University Lyon i   (France)

^e UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL CELL CULTURE; FORMING; MAMMALS; MODULAR CONSTRUCTION;

COLLAGEN FIBRILS; FIBRILLAR COLLAGENS; METAZOA; MODULAR STRUCTURES; PROTOSTOMES; SEA ANEMONES; SEQUENCED GENOMES;

COLLAGEN;

FIBRILLAR COLLAGEN;

AMPHIMEDON QUEENSLANDICA; ANEMONE; ARTICLE; COELENTERATE; GENE SEQUENCE; HUMAN; HYDRA MAGNIPAPILLATA; METAZOON; MONOSIGA BREVICOLLIS; NEMATOSTELLA VECTENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RADIATION; SPONGE (PORIFERA);

AMINO ACID SEQUENCE; ANIMALS; COLLAGEN; COLLAGEN TYPE V; COLLAGEN TYPE XI; EVOLUTION, MOLECULAR; FIBRILLAR COLLAGENS; GENOME; HUMANS; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; SEA ANEMONES; SEQUENCE HOMOLOGY, AMINO ACID;

ACTINIARIA; AMPHIMEDON; CNIDARIA; DEUTEROSTOMIA; EUMETAZOA; HYDRA; HYDRA MAGNIPAPILLATA; INVERTEBRATA; MAMMALIA; METAZOA; MONOSIGA BREVICOLLIS; NEMATOSTELLA VECTENSIS; PROTOSTOMIA;

EID: 57649133947     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M804573200     Document Type: Article

References (54)

1. Myllyharju, J., and Kivirikko, K. I. (2004) Trends Genet. 20, 33-43
2. Exposito, J. Y., Cluzel, C., Garrone, R., and Lethias, C. (2002) Anat. Rec. 268, 302-316
3. Rasmussen, M., Jacobsson, M., and Björck, L. (2003) J. Biol. Chem. 278, 32313-32316
4. Wang, C., and St. Leger, R. J. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 6647-6652
5. Veit, G., Kobbe, B., Keene, D. R., Paulsson, M., Koch, M., and Wagener, R. (2006) J. Biol. Chem. 281, 3494-3504
6. Söderhäll, C., Marenholz, I., Kerscher, T., Rüschendorf, F., Esparza-Gordillo, J., Worm, M., Gruber, C., Mayr, G., Albrecht, M., Rohde, K., Schulz, H., Wahn, U., Hubner, N., and Lee, Y. A. (2007) PLoS Biol. 5, e242
7. Exposito, J. Y., and Garrone, R. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 6669-6673
8. Boute, N., Exposito, J. Y., Boury-Esnault, N., Vacelet, J., Noro, N., Miyazaki, K., Yoshizato, K., and Garrone, R. (1996) Biol. Cell 88, 37-44
9. Zhang, X., Boot-Handford, R. P., Huxley-Jones, J., Forse, L. N., Mould, A. P., Robertson, D. L., Li, L., Athiyal, M., and Sarras, M. P., Jr. (2007) J. Biol. Chem. 282, 6792-6802
10. Aouacheria, A., Geourjon, C., Aghajari, N., Navratil, V., Deleage, G., Lethias, C., and Exposito, J. Y. (2006) Mol. Biol. Evol. 23, 2288-2302
11. Hjorten, R., Hansen, U., Underwood, R. A., Telfer, H. E., Fernandes, R. J., Krakow, D., Sebald, E., Wachsmann-Hogiu, S., Bruckner, P., Jacquet, R., Landis, W. J., Byers, P. H., and Pace, J. M. (2007) Bone 41, 535-542
12. Plumb, D. A., Dhir, V., Mironov, A., Ferrara, L., Poulsom, R., Kadler, K. E., Thornton, D. J., Briggs, M. D., and Boot-Handford, R. P. (2007) J. Biol. Chem. 282, 12791-12795
13. Koch, M., Laub, F., Zhou, P., Hahn, R. A., Tanaka, S., Burgeson, R. E., Gerecke, D. R., Ramirez, F., and Gordon, M. K. (2003) J. Biol. Chem. 278, 43236-43244
14. Boot-Handford, R. P., Tuckwell, D. S., Plumb, D. A., Rock, C. F., and Poulsom, R. (2003) J. Biol. Chem. 278, 31067-31077
15. Pace, J. M., Corrado, M., Missero, C., and Byers, P. H. (2003) Matrix Biol. 22, 3-14
16. Sicot, F. X., Exposito, J. Y., Masselot, M., Garrone, R., Deutsch, J., and Gaill, F. (1997) Eur. J. Biochem. 246, 50-58
17. Aouacheria, A., Cluzel, C., Lethias, C., Gouy, M., Garrone, R., and Exposito, J. Y. (2004) J. Biol. Chem. 279, 47711-47719
18. Wada, H., Okuyama, M., Satoh, N., and Zhang, S. (2006) Evol. Dev. 8, 370-377
19. Rychel, A. L., Smith, S. E., Shimamoto, H. T., and Swalla, B. J. (2006) Mol. Biol. Evol. 23, 541-549
20. Nichols, S. A., Dirks, W., Pearse, J. S., and King, N. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 12451-12456
21. Exposito, J. Y., van der Rest, M., and Garrone, R. (1993) J. Mol. Evol. 37, 254-259
22. Schröder, H. C., Boreiko, A., Korzhev, M., Tahir, M. N., Tremel, W., Eckert, C., Ushijima, H., Müller, I. M., and Müller, W. E. (2006) J. Biol. Chem. 281, 12001-12009
23. Burge, C., and Karlin, S. (1997) J. Mol. Biol. 268, 78-94
24. Schultz, J., Milpetz, F., Bork, P., and Ponting, C. P. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 5857-5864
25. King, N., Westbrook, M. J., Young, S. L., Kuo, A., Abedin, M., Chapman, J., Fairclough, S., Hellsten, U., Isogai, Y., Letunic, I., Marr, M., Pincus, D., Putnam, N., Rokas, A., Wright, K. J., Zuzow, R., Dirks, W., Good, M., Goodstein, D., Lemons, D., Li, W., Lyons, J. B., Morris, A., Nichols, S., Richter, D. J., Salamov, A., JGI Sequencing, Bork, P., Lim, W. A., Manning, G., Miller, W. T., McGinnis, W., Shapiro, H., Tjian, R., Grigoriev, I. V., and Rokhsar, D. (2008) Nature 451, 783-788
26. Leys, S. P., and Degnan, B. M. (2001) Biol. Bull. 201, 323-338
27. Leys, S. P., and Degnan, B. M. (2002) Invertebr. Biol. 121, 171-189
28. Larroux, C., Fahey, B., Liubicich, D., Hinman, V. F., Gauthier, M., Gongora, M., Green, K., Wörheide, G., Leys, S. P., and Degnan, B. M. (2006) Evol. Dev. 8, 150-173
29. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
30. Galtier, N., Gouy, M., and Gautier, C. (1996) Comput. Appl. Biosci. 12, 543-548
31. Thompson, J. D., Thierry, J. C., and Poch, O. (2003) Bioinformatics 19, 1155-1161
32. Felsenstein, J. (1996) Methods Enzymol. 266, 418-427
33. Guindon, S., Lethiec, F., Duroux, P., and Gascuel, O. (2005) Nucleic Acids Res. 33, W557-W559
34. Ronquist, F., and Huelsenbeck, J. P. (2003) Bioinformatics 19, 1572-1574
35. Huelsenbeck, J. P., and Ronquist, F. (2001) Bioinformatics 17, 754-755
36. Page, R. D. (1996) Comput. Appl. Biosci. 12, 357-358
37. Exposito, J. Y., D'Alessio, M., Solursh, M., and Ramirez, F. (1992) J. Biol. Chem. 267, 15559-15562
38. Olsen, B. R. (1982) in New Trends in Basement Membrane Research (Kühn, K., Schöene, H., and Timpl, R., eds) pp. 225-236, Raven Press, New York
39. Exposito, J. Y., Cluzel, C., Lethias, C., and Garrone, R. (2000) Matrix Biol. 19, 275-279
40. Putnam, N. H., Srivastava, M., Hellsten, U., Dirks, B., Chapman, J., Salamov, A., Terry, A., Shapiro, H., Lindquist, E., Kapitonov, V. V., Jurka, J., Genikhovich, G., Grigoriev, I. V., Lucas, S. M., Steele, R. E., Finnerty, J. R., Technau, U., Martindale, M. Q., and Rokhsar, D. S. (2007) Science 317, 86-94
41. Kortschak, R. D., Samuel, G., Saint, R., and Miller, D. J. (2003) Curr. Biol. 13, 2190-2195
42. Larroux, C., Fahey, B., Degnan, S. M., Adamski, M., Rokhsar, D. S., and Degnan, B. M. (2007) Curr. Biol. 17, 706-710
43. Larroux, C., Luke, G. N., Koopman, P., Rokhsar, D. S., Shimeld, S. M., and Degnan, B. M. (2008) Mol. Biol. Evol. 25, 980-996
44. Simionato, E., Ledent, V., Richards, G., Thomas-Chollier, M., Kerner, P., Coornaert, D., Degnan, B. M., and Vervoort, M. (2007) BMC Evol. Biol. 7, 33
45. Peterson, K. J., and Butterfield, N. J. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 9547-9552
46. Borchiellini, C., Manuel, M., Alivon, E., Boury-Esnault, N., Vacelet, J., and Le Parco, Y. (2001) J. Evol. Biol. 14, 171-179
47. Borchiellini, C., Chombard, C., Manuel, M., Alivon, E., Vacelet, J., and Boury-Esnault, N. (2004) Mol. Phylogenet. Evol. 32, 823-837
48. Roulet, M., Ruggiero, F., Karsenty, G., and Le Guellec, D. (2007) Cell Tissue Res. 327, 323-332
49. Wenstrup, R. J., Florer, J. B., Brunskill, E. W., Bell, S. M., Chervoneva, I., and Birk, D. E. (2004) J. Biol. Chem. 279, 53331-53337
50. Bos, K. J., Holmes, D. F., Kadler, K. E., McLeod, D., Morris, N. P., and Bishop, P. N. (2001) J. Mol. Biol. 306, 1011-1022
51. Birk, D. E. (2001) Micron 32, 223-237
52. Cluzel, C., Lethias, C., Garrone, R., and Exposito, J. Y. (2004) J. Biol. Chem. 279, 9811-9817
53. Deutzmann, R., Fowler, S., Zhang, X., Boone, K., Dexter, S., Boot-Handford, R. P., Rachel, R., and Sarras, M. P., Jr. (2000) Development 127, 4669-4680
54. Mizuno, K., Adachi, E., Imamura, Y., Katsumata, O., and Hayashi, T. (2001) Micron 32, 317-323