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Volumn 11, Issue 6, 2012, Pages 3344-3357

Quantitative metabolomic profiling of serum, plasma, and urine by 1H NMR spectroscopy discriminates between patients with inflammatory bowel disease and healthy individuals

Author keywords

chemometrics; inflammatory bowel disease; metabonomics; OPLS

Indexed keywords

2 HYDROXYBUTYRATE DEHYDROGENASE; 3 METHYL 2 OXOVALERIC ACID; ALLANTOIN; AMIDE; ARGININE; BETAINE; CARNITINE; CHOLINESTERASE; CITRIC ACID; CREATINE; CREATININE; FORMIC ACID; GALACTOSE; GLUCOSE; HIPPURIC ACID; ISOLEUCINE; LACTIC ACID; LYSINE; MALTOSE; MANNITOL; MANNOSE; METHANOL; OXOACID; PYRUVIC ACID; SERINE; SUCCINIC ACID; TRYPTOPHAN; TYROSINE; UNCLASSIFIED DRUG; UREA; XYLOSE;

EID: 84861808541     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr300139q     Document Type: Article
Times cited : (206)

References (62)
  • 1
    • 2442563304 scopus 로고    scopus 로고
    • Clinical epidemiology of inflammatory bowel disease: Incidence, prevalence, and environmental influences
    • Loftus, E. J. Clinical epidemiology of inflammatory bowel disease: Incidence, prevalence, and environmental influences Gastroenterology 2004, 126 (6) 1504-1517
    • (2004) Gastroenterology , vol.126 , Issue.6 , pp. 1504-1517
    • Loftus, E.J.1
  • 3
    • 33847381116 scopus 로고    scopus 로고
    • The fundamental basis of inflammatory bowel disease
    • Strober, W.; Fuss, I.; Mannon, P. The fundamental basis of inflammatory bowel disease J. Clin. Invest. 2007, 117 (3) 514-521
    • (2007) J. Clin. Invest. , vol.117 , Issue.3 , pp. 514-521
    • Strober, W.1    Fuss, I.2    Mannon, P.3
  • 4
    • 30344445931 scopus 로고    scopus 로고
    • Inflammatory bowel disease: Epidemiology, pathogenesis, and therapeutic opportunities
    • Hanauer, S. Inflammatory bowel disease: epidemiology, pathogenesis, and therapeutic opportunities Inflamm. Bowel Dis. 2006, 12 (Suppl 1) S3-9
    • (2006) Inflamm. Bowel Dis. , vol.12 , Issue.SUPPL. 1 , pp. 3-9
    • Hanauer, S.1
  • 5
    • 70350586935 scopus 로고    scopus 로고
    • Colonoscopy perforation rate, mechanisms and outcome: From diagnostic to therapeutic colonoscopy
    • Panteris, V.; Haringsma, J.; Kuipers, E. Colonoscopy perforation rate, mechanisms and outcome: from diagnostic to therapeutic colonoscopy Endoscopy 2009, 41 (11) 941-951
    • (2009) Endoscopy , vol.41 , Issue.11 , pp. 941-951
    • Panteris, V.1    Haringsma, J.2    Kuipers, E.3
  • 6
    • 71549164655 scopus 로고    scopus 로고
    • Process quality and incidence of acute complications in a series of more than 230,000 outpatient colonoscopies
    • Crispin, A.; Birkner, B.; Munte, A.; Nusko, G.; Mansmann, U. Process quality and incidence of acute complications in a series of more than 230,000 outpatient colonoscopies Endoscopy 2009, 41 (12) 1018-1025
    • (2009) Endoscopy , vol.41 , Issue.12 , pp. 1018-1025
    • Crispin, A.1    Birkner, B.2    Munte, A.3    Nusko, G.4    Mansmann, U.5
  • 7
    • 77950658599 scopus 로고    scopus 로고
    • Metabolomic analysis identifies inflammatory and noninflammatory metabolic effects of genetic modification in a mouse model of Crohn's disease
    • Lin, H. M.; Barnett, M. P.; Roy, N. C.; Joyce, N. I.; Zhu, S.; Armstrong, K.; Helsby, N. A.; Ferguson, L. R.; Rowan, D. D. Metabolomic analysis identifies inflammatory and noninflammatory metabolic effects of genetic modification in a mouse model of Crohn's disease J. Proteome Res. 2010, 9 (4) 1965-1975
    • (2010) J. Proteome Res. , vol.9 , Issue.4 , pp. 1965-1975
    • Lin, H.M.1    Barnett, M.P.2    Roy, N.C.3    Joyce, N.I.4    Zhu, S.5    Armstrong, K.6    Helsby, N.A.7    Ferguson, L.R.8    Rowan, D.D.9
  • 8
    • 65249184431 scopus 로고    scopus 로고
    • Nontargeted urinary metabolite profiling of a mouse model of Crohn's disease
    • Lin, H. M.; Edmunds, S. I.; Helsby, N. A.; Ferguson, L. R.; Rowan, D. D. Nontargeted urinary metabolite profiling of a mouse model of Crohn's disease J. Proteome Res. 2009, 8 (4) 2045-2057
    • (2009) J. Proteome Res. , vol.8 , Issue.4 , pp. 2045-2057
    • Lin, H.M.1    Edmunds, S.I.2    Helsby, N.A.3    Ferguson, L.R.4    Rowan, D.D.5
  • 12
    • 72249094770 scopus 로고    scopus 로고
    • MR metabolomics of fecal extracts: Applications in the study of bowel diseases
    • Bezabeh, T.; Somorjai, R.; Smith, I. MR metabolomics of fecal extracts: applications in the study of bowel diseases Magn. Reson. Chem. 2009, 47 (Suppl 1) S54-61
    • (2009) Magn. Reson. Chem. , vol.47 , Issue.SUPPL. 1 , pp. 54-61
    • Bezabeh, T.1    Somorjai, R.2    Smith, I.3
  • 13
    • 0034745979 scopus 로고    scopus 로고
    • The use of 1H magnetic resonance spectroscopy in inflammatory bowel diseases: Distinguishing ulcerative colitis from Crohn's disease
    • Bezabeh, T.; Somorjai, R. L.; Smith, I. C.; Nikulin, A. E.; Dolenko, B.; Bernstein, C. N. The use of 1H magnetic resonance spectroscopy in inflammatory bowel diseases: distinguishing ulcerative colitis from Crohn's disease Am. J. Gastroenterol. 2001, 96 (2) 442-448
    • (2001) Am. J. Gastroenterol. , vol.96 , Issue.2 , pp. 442-448
    • Bezabeh, T.1    Somorjai, R.L.2    Smith, I.C.3    Nikulin, A.E.4    Dolenko, B.5    Bernstein, C.N.6
  • 16
    • 79951664238 scopus 로고    scopus 로고
    • Biological markers in inflammatory bowel disease: Practical consideration for clinicians
    • Mendoza, J. L.; Abreu, M. T. Biological markers in inflammatory bowel disease: practical consideration for clinicians Gastroenterol. Clin. Biol. 2009, 33 (Suppl 3) S158-173
    • (2009) Gastroenterol. Clin. Biol. , vol.33 , Issue.SUPPL. 3 , pp. 158-173
    • Mendoza, J.L.1    Abreu, M.T.2
  • 18
    • 77953080246 scopus 로고    scopus 로고
    • Shortcomings of the inflammatory bowel disease Serology 7 panel
    • Benor, S.; Russell, G. H.; Silver, M.; Israel, E. J.; Yuan, Q.; Winter, H. S. Shortcomings of the inflammatory bowel disease Serology 7 panel Pediatrics 2010, 125 (6) 1230-1236
    • (2010) Pediatrics , vol.125 , Issue.6 , pp. 1230-1236
    • Benor, S.1    Russell, G.H.2    Silver, M.3    Israel, E.J.4    Yuan, Q.5    Winter, H.S.6
  • 19
    • 33745700438 scopus 로고    scopus 로고
    • Targeted profiling: Quantitative analysis of 1H NMR metabolomics data
    • Weljie, A. M.; Newton, J.; Mercier, P.; Carlson, E.; Slupsky, C. M. Targeted profiling: quantitative analysis of 1H NMR metabolomics data Anal. Chem. 2006, 78 (13) 4430-4442
    • (2006) Anal. Chem. , vol.78 , Issue.13 , pp. 4430-4442
    • Weljie, A.M.1    Newton, J.2    Mercier, P.3    Carlson, E.4    Slupsky, C.M.5
  • 20
    • 76149113262 scopus 로고    scopus 로고
    • Metabonomics in ulcerative colitis: Diagnostics, biomarker identification, and insight into the pathophysiology
    • Bjerrum, J. T.; Nielsen, O. H.; Hao, F.; Tang, H.; Nicholson, J. K.; Wang, Y.; Olsen, J. Metabonomics in ulcerative colitis: diagnostics, biomarker identification, and insight into the pathophysiology J. Proteome Res. 2010, 9 (2) 954-962
    • (2010) J. Proteome Res. , vol.9 , Issue.2 , pp. 954-962
    • Bjerrum, J.T.1    Nielsen, O.H.2    Hao, F.3    Tang, H.4    Nicholson, J.K.5    Wang, Y.6    Olsen, J.7
  • 21
    • 0345490738 scopus 로고    scopus 로고
    • 1H NMR-based metabonomic study of urine and plasma samples obtained from healthy human subjects
    • Lenz, E. M.; Bright, J.; Wilson, I. D.; Morgan, S. R.; Nash, A. F. 1H NMR-based metabonomic study of urine and plasma samples obtained from healthy human subjects J. Pharm. Biomed. Anal. 2003, 33 (5) 1103-1115
    • (2003) J. Pharm. Biomed. Anal. , vol.33 , Issue.5 , pp. 1103-1115
    • Lenz, E.M.1    Bright, J.2    Wilson, I.D.3    Morgan, S.R.4    Nash, A.F.5
  • 22
    • 33750095958 scopus 로고    scopus 로고
    • Effect of acute dietary standardization on the urinary, plasma, and salivary metabolomic profiles of healthy humans
    • Walsh, M. C.; Brennan, L.; Malthouse, J. P.; Roche, H. M.; Gibney, M. J. Effect of acute dietary standardization on the urinary, plasma, and salivary metabolomic profiles of healthy humans Am. J. Clin. Nutr. 2006, 84 (3) 531-539
    • (2006) Am. J. Clin. Nutr. , vol.84 , Issue.3 , pp. 531-539
    • Walsh, M.C.1    Brennan, L.2    Malthouse, J.P.3    Roche, H.M.4    Gibney, M.J.5
  • 25
    • 0019319257 scopus 로고
    • A simple index of Crohn's-disease activity
    • Harvey, R.; Bradshaw, J. A simple index of Crohn's-disease activity Lancet 1980, 315 (8167) 514
    • (1980) Lancet , vol.315 , Issue.8167 , pp. 514
    • Harvey, R.1    Bradshaw, J.2
  • 26
    • 0031812412 scopus 로고    scopus 로고
    • A simple clinical colitis activity index
    • Walmsley, R. S.; Ayres, R. C.; Pounder, R. E.; Allan, R. N. A simple clinical colitis activity index Gut 1998, 43 (1) 29-32
    • (1998) Gut , vol.43 , Issue.1 , pp. 29-32
    • Walmsley, R.S.1    Ayres, R.C.2    Pounder, R.E.3    Allan, R.N.4
  • 30
    • 27544491192 scopus 로고    scopus 로고
    • ROCR: Visualizing classifier performance in R
    • Sing, T.; Sander, O.; Beerenwinkel, N.; Lengauer, T. ROCR: visualizing classifier performance in R Bioinformatics 2005, 21 (20) 3940-3941
    • (2005) Bioinformatics , vol.21 , Issue.20 , pp. 3940-3941
    • Sing, T.1    Sander, O.2    Beerenwinkel, N.3    Lengauer, T.4
  • 31
    • 0001369487 scopus 로고    scopus 로고
    • Hierarchical multiblock PLS and PC models for easier model interpretation and as an alternative to variable selection
    • Wold, S.; Kettaneh, N.; Tjessem, K. Hierarchical multiblock PLS and PC models for easier model interpretation and as an alternative to variable selection J. Chemom. 1996, 10 (5-6) 463-482
    • (1996) J. Chemom. , vol.10 , Issue.5-6 , pp. 463-482
    • Wold, S.1    Kettaneh, N.2    Tjessem, K.3
  • 32
    • 57049170939 scopus 로고    scopus 로고
    • Metabolism of the colonic mucosa in patients with inflammatory bowel diseases: An in vitro proton magnetic resonance spectroscopy study
    • Balasubramanian, K.; Kumar, S.; Singh, R. R.; Sharma, U.; Ahuja, V.; Makharia, G. K.; Jagannathan, N. R. Metabolism of the colonic mucosa in patients with inflammatory bowel diseases: an in vitro proton magnetic resonance spectroscopy study Magn. Reson. Imaging 2009, 27 (1) 79-86
    • (2009) Magn. Reson. Imaging , vol.27 , Issue.1 , pp. 79-86
    • Balasubramanian, K.1    Kumar, S.2    Singh, R.R.3    Sharma, U.4    Ahuja, V.5    Makharia, G.K.6    Jagannathan, N.R.7
  • 34
    • 72249105772 scopus 로고    scopus 로고
    • NMR-based metabonomics analysis of mouse urine and fecal extracts following oral treatment with the broad-spectrum antibiotic enrofloxacin (Baytril)
    • Romick-Rosendale, L. E.; Goodpaster, A. M.; Hanwright, P. J.; Patel, N. B.; Wheeler, E. T.; Chona, D. L.; Kennedy, M. A. NMR-based metabonomics analysis of mouse urine and fecal extracts following oral treatment with the broad-spectrum antibiotic enrofloxacin (Baytril) Magn. Reson. Chem. 2009, 47 (Suppl 1) S36-46
    • (2009) Magn. Reson. Chem. , vol.47 , Issue.SUPPL. 1 , pp. 36-46
    • Romick-Rosendale, L.E.1    Goodpaster, A.M.2    Hanwright, P.J.3    Patel, N.B.4    Wheeler, E.T.5    Chona, D.L.6    Kennedy, M.A.7
  • 36
    • 0030961305 scopus 로고    scopus 로고
    • Sphingosine 1-phosphate, a bioactive sphingolipid abundantly stored in platelets, is a normal constituent of human plasma and serum
    • Yatomi, Y.; Igarashi, Y.; Yang, L.; Hisano, N.; Qi, R.; Asazuma, N.; Satoh, K.; Ozaki, Y.; Kume, S. Sphingosine 1-phosphate, a bioactive sphingolipid abundantly stored in platelets, is a normal constituent of human plasma and serum J. Biochem. 1997, 121 (5) 969-973
    • (1997) J. Biochem. , vol.121 , Issue.5 , pp. 969-973
    • Yatomi, Y.1    Igarashi, Y.2    Yang, L.3    Hisano, N.4    Qi, R.5    Asazuma, N.6    Satoh, K.7    Ozaki, Y.8    Kume, S.9
  • 38
    • 0242486705 scopus 로고    scopus 로고
    • Homocysteine, cysteine, and glutathione in human colonic mucosa: Elevated levels of homocysteine in patients with inflammatory bowel disease
    • Morgenstern, I.; Raijmakers, M. T.; Peters, W. H.; Hoensch, H.; Kirch, W. Homocysteine, cysteine, and glutathione in human colonic mucosa: elevated levels of homocysteine in patients with inflammatory bowel disease Dig. Dis. Sci. 2003, 48 (10) 2083-2090
    • (2003) Dig. Dis. Sci. , vol.48 , Issue.10 , pp. 2083-2090
    • Morgenstern, I.1    Raijmakers, M.T.2    Peters, W.H.3    Hoensch, H.4    Kirch, W.5
  • 39
    • 53549091032 scopus 로고    scopus 로고
    • Clinical applications of urinary organic acids. Part I: Detoxification markers
    • Lord, R. S.; Bralley, J. A. Clinical applications of urinary organic acids. Part I: Detoxification markers Altern. Med. Rev. 2008, 13 (3) 205-215
    • (2008) Altern. Med. Rev. , vol.13 , Issue.3 , pp. 205-215
    • Lord, R.S.1    Bralley, J.A.2
  • 41
    • 0033935979 scopus 로고    scopus 로고
    • Creatine and creatinine metabolism
    • Wyss, M.; Kaddurah-Daouk, R. Creatine and creatinine metabolism Physiol. Rev. 2000, 80 (3) 1107-1213
    • (2000) Physiol. Rev. , vol.80 , Issue.3 , pp. 1107-1213
    • Wyss, M.1    Kaddurah-Daouk, R.2
  • 43
    • 0030005368 scopus 로고    scopus 로고
    • Increased hepatic urea synthesis in patients with active inflammatory bowel disease
    • Lundsgaard, C.; Hamberg, O.; Thomsen, O. O.; Nielsen, O. H.; Vilstrup, H. Increased hepatic urea synthesis in patients with active inflammatory bowel disease J. Hepatol. 1996, 24 (5) 587-593
    • (1996) J. Hepatol. , vol.24 , Issue.5 , pp. 587-593
    • Lundsgaard, C.1    Hamberg, O.2    Thomsen, O.O.3    Nielsen, O.H.4    Vilstrup, H.5
  • 45
    • 79955864329 scopus 로고    scopus 로고
    • Choline and betaine in health and disease
    • Ueland, P. M. Choline and betaine in health and disease J. Inherit. Metab. Dis. 2011, 34 (1) 3-15
    • (2011) J. Inherit. Metab. Dis. , vol.34 , Issue.1 , pp. 3-15
    • Ueland, P.M.1
  • 46
    • 0028789050 scopus 로고
    • Choline deficiency: A cause of hepatic steatosis during parenteral nutrition that can be reversed with intravenous choline supplementation
    • Buchman, A. L.; Dubin, M. D.; Moukarzel, A. A.; Jenden, D. J.; Roch, M.; Rice, K. M.; Gornbein, J.; Ament, M. E. Choline deficiency: a cause of hepatic steatosis during parenteral nutrition that can be reversed with intravenous choline supplementation Hepatology 1995, 22 (5) 1399-1403
    • (1995) Hepatology , vol.22 , Issue.5 , pp. 1399-1403
    • Buchman, A.L.1    Dubin, M.D.2    Moukarzel, A.A.3    Jenden, D.J.4    Roch, M.5    Rice, K.M.6    Gornbein, J.7    Ament, M.E.8
  • 47
    • 37049237422 scopus 로고
    • Methanol in normal human breath
    • Eriksen, S. P.; Kulkarni, A. B. Methanol in normal human breath Science 1963, 141 (3581) 639-640
    • (1963) Science , vol.141 , Issue.3581 , pp. 639-640
    • Eriksen, S.P.1    Kulkarni, A.B.2
  • 50
    • 0034034005 scopus 로고    scopus 로고
    • Degradation of pectins with different degrees of esterification by Bacteroides thetaiotaomicron isolated from human gut flora
    • Dongowski, G.; Lorenz, A.; Anger, H. Degradation of pectins with different degrees of esterification by Bacteroides thetaiotaomicron isolated from human gut flora Appl. Environ. Microbiol. 2000, 66 (4) 1321-1327
    • (2000) Appl. Environ. Microbiol. , vol.66 , Issue.4 , pp. 1321-1327
    • Dongowski, G.1    Lorenz, A.2    Anger, H.3
  • 51
    • 0023877764 scopus 로고
    • Methanol production from the degradation of pectin by human colonic bacteria
    • Siragusa, R. J.; Cerda, J. J.; Baig, M. M.; Burgin, C. W.; Robbins, F. L. Methanol production from the degradation of pectin by human colonic bacteria Am. J. Clin. Nutr. 1988, 47 (5) 848-851
    • (1988) Am. J. Clin. Nutr. , vol.47 , Issue.5 , pp. 848-851
    • Siragusa, R.J.1    Cerda, J.J.2    Baig, M.M.3    Burgin, C.W.4    Robbins, F.L.5
  • 52
    • 84858153337 scopus 로고    scopus 로고
    • Role of the microbiota in inflammatory bowel diseases
    • Nagalingam, N. A.; Lynch, S. V. Role of the microbiota in inflammatory bowel diseases Inflamm. Bowel Dis. 2011, 18, 968-984
    • (2011) Inflamm. Bowel Dis. , vol.18 , pp. 968-984
    • Nagalingam, N.A.1    Lynch, S.V.2
  • 53
    • 0345306333 scopus 로고    scopus 로고
    • Toxicological and metabolic consequences of methanol poisoning
    • Skrzydlewska, E. Toxicological and metabolic consequences of methanol poisoning Toxicol. Mech. Methods 2003, 13 (4) 277-293
    • (2003) Toxicol. Mech. Methods , vol.13 , Issue.4 , pp. 277-293
    • Skrzydlewska, E.1
  • 54
  • 55
    • 38649115342 scopus 로고    scopus 로고
    • Microbial influences in inflammatory bowel diseases
    • Sartor, R. B. Microbial influences in inflammatory bowel diseases Gastroenterology 2008, 134 (2) 577-594
    • (2008) Gastroenterology , vol.134 , Issue.2 , pp. 577-594
    • Sartor, R.B.1
  • 58
    • 0031594304 scopus 로고    scopus 로고
    • Determination of 15N isotopic enrichment and concentrations of allantoin and uric acid in urine by gas chromatography/mass spectrometry
    • Chen, X. B.; Calder, A. G.; Prasitkusol, P.; Kyle, D. J.; Jayasuriya, M. C. Determination of 15N isotopic enrichment and concentrations of allantoin and uric acid in urine by gas chromatography/mass spectrometry J. Mass. Spectrom. 1998, 33 (2) 130-137
    • (1998) J. Mass. Spectrom. , vol.33 , Issue.2 , pp. 130-137
    • Chen, X.B.1    Calder, A.G.2    Prasitkusol, P.3    Kyle, D.J.4    Jayasuriya, M.C.5
  • 60
    • 0142123359 scopus 로고    scopus 로고
    • The cellulolytic microflora of the human colon: Evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects
    • Robert, C.; Bernalier-Donadille, A. The cellulolytic microflora of the human colon: evidence of microcrystalline cellulose-degrading bacteria in methane-excreting subjects FEMS Microbiol. Ecol. 2003, 46 (1) 81-89
    • (2003) FEMS Microbiol. Ecol. , vol.46 , Issue.1 , pp. 81-89
    • Robert, C.1    Bernalier-Donadille, A.2
  • 61
    • 78649622569 scopus 로고    scopus 로고
    • Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray
    • Kang, S.; Denman, S. E.; Morrison, M.; Yu, Z.; Dore, J.; Leclerc, M.; McSweeney, C. S. Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray Inflamm. Bowel Dis. 2010, 16 (12) 2034-2042
    • (2010) Inflamm. Bowel Dis. , vol.16 , Issue.12 , pp. 2034-2042
    • Kang, S.1    Denman, S.E.2    Morrison, M.3    Yu, Z.4    Dore, J.5    Leclerc, M.6    McSweeney, C.S.7
  • 62
    • 79952481100 scopus 로고    scopus 로고
    • Using metabolomic analysis to understand inflammatory bowel diseases
    • Lin, H. M.; Helsby, N. A.; Rowan, D. D.; Ferguson, L. R. Using metabolomic analysis to understand inflammatory bowel diseases Inflamm. Bowel Dis. 2011, 17 (4) 1021-1029
    • (2011) Inflamm. Bowel Dis. , vol.17 , Issue.4 , pp. 1021-1029
    • Lin, H.M.1    Helsby, N.A.2    Rowan, D.D.3    Ferguson, L.R.4


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