Rapid strain classification and taxa delimitation within the edible mushroom genus Pleurotus through the use of diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy

Fungal Biology

Volumn 116, Issue 6, 2012, Pages 715-728

  Zervakis, Georgios I ^a   Bekiaris, Georgios ^a   Tarantilis, Petros A ^a   Pappas, Christos S ^a  

^a AGRICULTURAL UNIVERSITY OF ATHENS   (Greece)

Author keywords

Filamentous fungi; FT IR spectroscopy; Mushroom identification; Oyster mushroom; Pleurotus taxonomy

Indexed keywords

BACTERIUM; CLUSTER ANALYSIS; COST-BENEFIT ANALYSIS; FTIR SPECTROSCOPY; MUSHROOM; SUBSTRATE; TAXONOMY; YEAST;

ARTICLE; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; ECONOMICS; EVALUATION; INFRARED SPECTROSCOPY; METHODOLOGY; MYCOLOGY; PLEUROTUS; SENSITIVITY AND SPECIFICITY; TIME;

CLUSTER ANALYSIS; MYCOLOGY; PLEUROTUS; SENSITIVITY AND SPECIFICITY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; TIME FACTORS;

AGARICALES; BACTERIA (MICROORGANISMS); BASIDIOMYCOTA; FUNGI; MYCELIUM (GENUS); PLEUROTUS; PLEUROTUS DJAMOR; PLEUROTUS DRYINUS; PLEUROTUS ERYNGII; PLEUROTUS OSTREATUS; PLEUROTUS PULMONARIUS;

EID: 84861684622     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2012.04.006     Document Type: Article

References (44)

1. Chang S.T. Training Manual on Mushroom Cultivation 2008, United Nations, Economic and Social Commission for Asia and the Pacific, Beijing, China.
2. De Gussem K., Vandenabeele P., Verbeken A., Moens L. Raman spectroscopic study of Lactarius spores (Russulales, Fungi). Spectrochimica Acta A 2005, 61:2896-2908.
3. Erukhimovitch V., Pavlov V., Talyshinsky M., Souprun Y., Huleihel M. FTIR microscopy as a method for identification of bacterial and fungal infections. Journal of Pharmaceutical and Biomedical Analysis 2005, 37:1105-1108.
4. Fischer G., Braun S., Thissen R., Dott W. FT-IR spectroscopy as a tool for rapid identification and intra-species characterization of airborne filamentous fungi. Journal of Microbiological Methods 2006, 64:63-77.
5. Galvis-Sánchez A.C., Barros A.S., Delgadillo I. Method for analysis dried vine fruits contaminated with ochratoxin A. Analytica Chimica Acta 2008, 617:59-63.
6. Goodacre R., Timmins E.M., Rooney P.J., Rowland J.J., Kell D.B. Rapid identification of Streptococcus and Enterococcus sp. using diffuse reflectance-absorbance Fourier transform infrared spectroscopy and artificial neural network. FEMS Microbiology Letters 1996, 140:233-239.
7. Iraçabal B., Zervakis G., Labarère J. Molecular systematics of the genus Pleurotus: analysis of restriction length polymorphisms in ribosomal DNA. Microbiology-SGM 1995, 141:1479-1490.
8. Jilkine K., Gough K.M., Julian R., Kaminskyj S.G.W. A sensitive method for examining whole-cell biochemical composition in single cells of filamentous fungi using synchrotron FTIR spectromicroscopy. Journal of Inorganic Biochemistry 2008, 102:540-546.
9. Kamnev A.A. FTIR spectroscopic studies of bacterial cellular responses to environmental factors, plant-bacterial interactions and signaling. Spectroscopy 2008, 22:83-95.
10. Kamnev A.A., Sadovnikova J.A., Tarantilis P.A., Polissiou M.G., Antonyuk L.P. Responses of Azospirillum brasilense to nitrogen deficiency and to wheat lectin: a diffuse reflectance infrared Fourier transform (DRIFT) spectroscopic study. Microbial Ecology 2008, 56:615-624.
11. Kos G., Lohninger H., Krska R. Development of a method for the determination of Fusarium fungi on corn using mid-infrared spectroscopy with attenuated total reflection and chemometrics. Analytical Chemistry 2003, 75:1211-1217.
12. Lamprell H., Mazerolles G., Kodjo A., Chamba J.F., Noel Y., Beuvier E. Discrimination of Staphylococcus aureus strains from different species of Staphylococcus using Fourier transform infrared (FTIR) spectroscopy. International Journal of Food Microbiology 2006, 108:125-129.
13. Linker R., Tsror L. Discrimination of soil-borne fungi using Fourier transform infrared attenuated total reflection spectroscopy. Applied Spectroscopy 2008, 62:302-305.
14. Marder L., Corbellini V.A., Ferrão M.F., Scroferneker M.L., Schneider R.C.S. Quantitative analysis of total mycotoxins in metabolic extracts of four strains of Bipolaris sorokiniana (Helminthosporium sativum). Process in Biochemistry 2006, 41:177-180.
15. Mohaček-Grošev V., Bozac R., Puppels G.J. Vibrational spectroscopic characterization of wild growing mushrooms and toadstools. Spectrochimica Acta Part A 2001, 57:2815-2829.
16. Movasaghi Z., Rehman S., Rehman I.U. Fourier transform infrared (FTIR) spectroscopy of biological tissues. Applied Spectroscopy Reviews 2008, 43:134-179.
17. Naumann A. A novel procedure for strain classification of fungal mycelium by cluster and artificial neural network analysis of Fourier transform infrared (FTIR) spectra. Analyst 2009, 134:1215-1223.
18. Naumann A., Navarro-González M., Peddireddi S., Kües U., Polle A. Fourier transform infrared microscopy and imaging: detection of fungi in wood. Fungal Genetics and Biology 2005, 42:829-835.
19. Naumann D. Infrared spectroscopy in microbiology. Encyclopedia of Analytical Chemistry 2000, 102-131. John Wiley & Sons Ltd, Chichester. R.A. Meyers (Ed.).
20. Naumann D., Helm D., Labischinski H. Microbiological characterization by FT-IR spectroscopy. Nature 1991, 351:81-82.
21. Naumann D., Schultz C.P., Helm D. What can infrared spectroscopy tell us about the structure and composition of intact bacterial cells. Infrared Spectroscopy of Biomolecules 1996, 279-310. John Wiley & Sons, New York. H.H. Mantsch, D. Chapman (Eds.).
22. Nie M., Zhang W.Q., Xiao M., Luo J.L., Bao K., Chen J.K., Li B. FT-IR spectroscopy and artificial neural network identification of Fusarium species. Journal of Phytopathology 2007, 155:364-367.
23. Ohira I, 1990. A revision of the taxonomic status of Pleurotus citrinopileatus. Reports of the Tottori Mycological Institute 28:143-150.
24. Pandey K.K., Pitman A.J. FTIR studies of the changes in wood chemistry following decay by brown-rot and white-rot fungi. International Biodeterioration and Biodegradation 2003, 52:151-160.
25. Pappas C.S., Tarantilis P.A., Moschopoulou E., Moatsou G., Kandarakis I., Polissiou M.G. Identification and differentiation of goat and sheep milk based on diffuse refiectance infrared Fourier transform spectroscopy (DRIFTS) using cluster analysis. Food Chemistry 2008, 106:1271-1277.
26. Petersen R.H., Hughes K.W. A new species of Pleurotus. Mycologia 1997, 89:173-180.
27. Petersen R.H., Hughes K.W. Phylogeographic examples of Asian biodiversity in mushrooms and their relatives. Fungal Diversity 2003, 13:95-109.
28. Petersen R.H., Nicholl D.B.G., Hughes K.W. Mating systems of some putative polypore-agaric relatives. Plant Systematics and Evolution 1997, 201:135-158.
29. Popescu C.-M., Popescu M.-C., Vasile C. Characterization of fungal degraded lime wood by FT-IR and 2D IR correlation spectroscopy. Microchemical Journal 2010, 95:377-387.
30. Ravash R., Shiran B., Alavi A.-A., Bayat F., Rajaee S., Zervakis G.I. Genetic variability and molecular phylogeny of Pleurotus eryngii species-complex isolates from Iran, and notes on the systematics of Asiatic populations. Mycological Progress 2010, 9:181-194.
31. Rodriguez-Estrada A.E., Jimenez-Gasco M.M., Royse D.J. Pleurotus eryngii species complex: sequence analysis and phylogeny based on partial EF1 alpha and RPB2 genes. Fungal Biology 2010, 114:421-428.
32. Salman A., Tsror L., Pomerantz A., Moreh R., Mordechai S., Huleihel M. FTIR spectroscopy for detection and identification of fungal phytopathogenes. Spectroscopy 2010, 24:261-267.
33. Saparrat M.C.N., Estevez J.M., Troncozo M.I., Arambarri A.M., Balatti P.A. In-vitro depolymerization of Scutia buxifolia leaf-litter by a dominant Ascomycota Ciliochorella sp. International Biodeterioration and Biodegradation 2010, 64:262-266.
34. Sivakesava S., Irudayaraj J.M., Debroy C. Differentiation of microorganisms by FTIR-ATR and NIR spectroscopy. Transactions of the ASAE 2004, 47:951-957.
35. Tarantilis P.A., Troianou V.E., Pappas C.S., Kotseridis Y.S., Polissiou M.G. Differentiation of Greek red wines on the basis of grape variety using attenuated total reflectance Fourier transform infrared spectroscopy. Food Chemistry 2008, 111:192-196.
36. Toubas D., Essendoubi M., Adt I., Pinon J.M., Manfait M., Sockalingum G.D. FTIR spectroscopy in medical mycology: applications to the differentiation and typing of Candida. Analytical and Bioanalytical Chemistry 2007, 387:1729-1737.
37. Vilgalys R., Sun B. Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences. Proceedings of the National Academy of Sciences USA 1994, 91:4599-4603.
38. Zervakis G. Mating competence and biological species within the subgenus Coremiopleurotus. Mycologia 1998, 90:1063-1074.
39. Zervakis G. Molecular systematics, evolution and speciation in higher fungi: the oyster-mushroom genus Pleurotus. Plant Genome: Biodiversity and Evolution 2004, vol. 2A:99-128. Lower Groups. Science Publishers, USA.
40. Zervakis G., Balis C. A pluralistic approach on the study of Pleurotus species, with emphasis on compatibility and physiology of the European morphotaxa. Mycological Research 1996, 100:717-731.
41. Zervakis G.I., Moncalvo J.-M., Vilgalys R. Molecular phylogeny, biogeography and speciation of the mushroom species Pleurotus cystidiosus and allied taxa. Microbiology-SGM 2004, 150:715-726.
42. Zervakis G., Sourdis J., Balis C. Genetic variability and systematics of eleven Pleurotus species based on isozyme analysis. Mycological Research 1994, 98:329-341.
43. Zervakis G., Venturella G., Papadopoulou K. Genetic polymorphism and taxonomic relationships of the Pleurotus eryngii species-complex as resolved through the analysis of random amplified DNA patterns, isozyme profiles and ecomorphological characters. Microbiology-SGM 2001, 147:3183-3194.
44. Zhang X., Yu H., Huang H., Liu Y. Evaluation of biological pretreatment with white rot fungi for the enzymatic hydrolysis of bamboo culms. International Biodeterioration and Biodegradation 2007, 60:159-164.