Contribution of partial charge interactions and base stacking to the efficiency of primer extension at and beyond abasic sites in DNA

Biochemistry

Volumn 51, Issue 24, 2012, Pages 4922-4931

  Xia, Shuangluo ^a   Vashishtha, Ashwani ^a   Bulkley, David ^a   Eom, Soo Hyun ^b   Wang, Jimin ^a   Konigsberg, William H ^a  

^a YALE UNIVERSITY   (United States)

^b Gwangju Institute of Science and Technology (GIST)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BASE PAIRS; BASE STACKING; CHARGE-CHARGE INTERACTIONS; CHEMICAL EQUATIONS; DNA POLYMERASE; DNA SYNTHESISS; HYDROPHOBIC PATCH; PARTIAL CHARGES; PRIMER EXTENSION; SURFACE AREA; TEMPLATING; TERNARY COMPLEX; WATER MOLECULE;

EFFICIENCY; HYDROGEN BONDS; KINETIC PARAMETERS; MOLECULES; POLYMERS;

DNA;

DNA BASE; DNA POLYMERASE; NUCLEOTIDE; PARATHION; PRIMER DNA; WATER;

ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; DNA STRUCTURE; HYDROGEN BOND; HYDROPHOBICITY; INTERACTIONS WITH DNA; KINETICS; NONHUMAN; PRIORITY JOURNAL;

BASE PAIRING; BASE SEQUENCE; DNA; DNA PRIMERS; DNA-DIRECTED DNA POLYMERASE; FURANS; KINETICS; MODELS, MOLECULAR; MUTATION; PROTEIN CONFORMATION; VIRAL PROTEINS;

EID: 84861584310     PISSN: 00062960     EISSN: 15204995     Source Type: Journal    
DOI: 10.1021/bi300296q     Document Type: Article

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