-
1
-
-
23844449940
-
Computer-based de novo design of drug-like molecules
-
DOI 10.1038/nrd1799
-
G. Schneider and U. Fechner, "Computer-Based De Novo Design of Drug-Like Molecules," Nature Rev. Drug Discovery, vol. 4, pp. 649-663, 2005. (Pubitemid 41149759)
-
(2005)
Nature Reviews Drug Discovery
, vol.4
, Issue.8
, pp. 649-663
-
-
Schneider, G.1
Fechner, U.2
-
2
-
-
28044464697
-
Active site driven ligand design: An evolution approach
-
DOI 10.1142/S021972000500148X, PII S021972000500148X
-
S. Bandyopadhyay, A. Bagchi, and U. Maulik, "Active Site Driven Ligand Design: An Evolutionary Approach," J. Bioinformatics and Computational Biology, vol. 3, pp. 1053-1070, 2005. (Pubitemid 41683429)
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, Issue.5
, pp. 1053-1070
-
-
Bandyopadhyay, S.1
Bagchi, A.2
Maulik, U.3
-
4
-
-
0000217414
-
Ligbuilder: A multi-purpose program for structure-based drug design
-
R. Wang, T. Gao, and L. Lai, "LigBuilder: A Multi-Purpose Program for Structure-Based Drug Design," J. Moleculer Modeling, vol. 6, pp. 498-516, 2000.
-
(2000)
J. Moleculer Modeling
, vol.6
, pp. 498-516
-
-
Wang, R.1
Gao, T.2
Lai, L.3
-
5
-
-
0027517544
-
Confirmation of usefulness of a structure construction program based on three-dimensional receptor structure for rational lead generation
-
DOI 10.1021/jm00072a011
-
Y. Nishibata and A. Itai, "Confirmation of Usefulness of a Structure Construction Program Based on Three-Dimensional Receptor Structure for Rational Lead Generation," J. Medicinal Chemistry, vol. 36, pp. 2921-2928, 1993. (Pubitemid 23315395)
-
(1993)
Journal of Medicinal Chemistry
, vol.36
, Issue.20
, pp. 2921-2928
-
-
Nishibata, Y.1
Itai, A.2
-
6
-
-
0028036120
-
Multiple highly diverse structures complementary to enzyme binding sites: Results of extensive application of a de novo design method incorporating combinatorial growth
-
R.S. Bohacek and C. McMartin, "Multiple Highly Diverse Structures Complementary to Enzyme Binding Sites: Results of Extensive Application of a De Novo Design Method Incorporating Combinatorial Growth," J. Am. Chemical Soc., vol. 116, pp. 5560-5571, 1994.
-
(1994)
J. Am. Chemical Soc.
, vol.116
, pp. 5560-5571
-
-
Bohacek, R.S.1
McMartin, C.2
-
9
-
-
26444479778
-
Optimization by simulated annealing
-
S. Kirkpatrick, C. Gelatt, and M. Vecchi, "Optimization by Simulated Annealing," Science, vol. 22, pp. 671-680, 1983.
-
(1983)
Science
, vol.22
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt, C.2
Vecchi, M.3
-
10
-
-
0001687986
-
Structure-based ligand design by a build-up approach and genetic algorithm search in conformational space
-
DOI 10.1002/jcc.1145
-
N. Budin, N. Majeux, C. Tenette Souaille, and A. Caflisch, "Structure-Based Ligand Design by a Build-up Approach and Genetic Algorithm Search in Conformational Space," J. Computational Chemistry, vol. 22, pp. 1956-1970, 2001. (Pubitemid 33608134)
-
(2001)
Journal of Computational Chemistry
, vol.22
, Issue.16
, pp. 1956-1970
-
-
Budin, N.1
Majeux, N.2
Tenette-Souaille, C.3
Caflisch, A.4
-
11
-
-
0032675130
-
Automatic molecular design using evolutionary techniques
-
A. Globus, J. Lawton, and T. Wipke, "Automatic Molecular Design Using Evolutionary Techniques," Nanotechnology, vol. 10, pp. 290-299, 1999.
-
(1999)
Nanotechnology
, vol.10
, pp. 290-299
-
-
Globus, A.1
Lawton, J.2
Wipke, T.3
-
12
-
-
0035570105
-
A genetic algorithm for structure-based de novo design
-
DOI 10.1023/A:1014389729000
-
S.C. Pegg, J.J. Haresco, and I.D. Kuntz, "A Genetic Algorithm for Structure-Based De Novo Design," J. Computer-Aided. Moleculer Design, vol. 15, pp. 911-933, 2001. (Pubitemid 34218293)
-
(2001)
Journal of Computer-Aided Molecular Design
, vol.15
, Issue.10
, pp. 911-933
-
-
Pegg, S.C.-H.1
Haresco, J.J.2
Kuntz, I.D.3
-
13
-
-
0034085674
-
A genetic algorithm for the automated generation of small organic molecules: Drug design using an evolutionary algorithm
-
DOI 10.1023/A:1008108423895
-
D. Douguet, E. Thoreau, and G. Grassy, "A Genetic Algorithm for the Automated Generation of Small Organic Molecules: Drug Design Using An Evolutionary Algorithm," J. Computer-Aided Molecular Design, vol. 14, pp. 449-466, 2000. (Pubitemid 30386820)
-
(2000)
Journal of Computer-Aided Molecular Design
, vol.14
, Issue.5
, pp. 449-466
-
-
Douguet, D.1
Thoreau, E.2
Grassy, G.3
-
14
-
-
17144419244
-
LEA3D: A computer-aided ligand design for structure-based drug design
-
DOI 10.1021/jm0492296
-
D. Douguet, H. Munier-Lehmann, G. Labesse, and S. Pochet, "LEA3D: A Computer-Aided Ligand Design for Structure-Based Drug Design," J. Medicinal Chemistry, vol. 48, pp.2457-2468, 2005. (Pubitemid 40516437)
-
(2005)
Journal of Medicinal Chemistry
, vol.48
, Issue.7
, pp. 2457-2468
-
-
Douguet, D.1
Munier-Lehmann, H.2
Labesse, G.3
Pochet, S.4
-
15
-
-
84861524119
-
Efficient strategies for lead optimization by simultaneously addressing affinity, selectivity and pharmacokinetic parameters
-
chapter 19, Wiley-VCH Verlag GmbH
-
K.H. Baringhaus and H. Matte, "Efficient Strategies for Lead Optimization by Simultaneously Addressing Affinity, Selectivity and Pharmacokinetic Parameters," Bioinformatics-From Genomes to Therapies, chapter 19, Wiley-VCH Verlag GmbH, 2008.
-
(2008)
Bioinformatics-From Genomes to Therapies
-
-
Baringhaus, K.H.1
Matte, H.2
-
17
-
-
42149174453
-
Fragment-based de Novo Ligand design by multiobjective evolutionary optimization
-
DOI 10.1021/ci700424b
-
F. Dey and A. Caflisch, "Fragment-Based de Novo Ligand Design by Multiobjective Evolutionary Optimization," J. Chemical Information Modelling, vol. 48, pp. 679-690, 2008. (Pubitemid 351535435)
-
(2008)
Journal of Chemical Information and Modeling
, vol.48
, Issue.3
, pp. 679-690
-
-
Dey, F.1
Caflisch, A.2
-
18
-
-
65249111062
-
De novo drug design using multiobjective evolutionary graphs
-
C.A. Nicolaou, J. Apostolakis, and C.S. Pattichis, "De Novo Drug Design Using Multiobjective Evolutionary Graphs," J. Chemical Information and Modelling, vol. 49, pp. 295-307, 2009.
-
(2009)
J. Chemical Information and Modelling
, vol.49
, pp. 295-307
-
-
Nicolaou, C.A.1
Apostolakis, J.2
Pattichis, C.S.3
-
19
-
-
77954814751
-
Evolving molecules using multi-objective optimization: Applying to adme/tox
-
S. Ekins, J.D. Honeycutt, and J.T. Metz, "Evolving Molecules Using Multi-Objective Optimization: Applying to ADME/Tox," Drug Discovery Today, vol. 15, pp. 451-460, 2010.
-
(2010)
Drug Discovery Today
, vol.15
, pp. 451-460
-
-
Ekins, S.1
Honeycutt, J.D.2
Metz, J.T.3
-
20
-
-
33748099709
-
Drug Guru: A computer software program for drug design using medicinal chemistry rules
-
DOI 10.1016/j.bmc.2006.06.024, PII S0968089606004895
-
K.D. Stewart, M. Shiroda, and C.A. James, "Drug Guru: A Computer Software Program for Drug Design Using Medicinal Chemistry Rules," Bioorganic and Medicinal Chemistry, vol. 14, pp. 7011-7022, 2006. (Pubitemid 44307638)
-
(2006)
Bioorganic and Medicinal Chemistry
, vol.14
, Issue.20
, pp. 7011-7022
-
-
Stewart, K.D.1
Shiroda, M.2
James, C.A.3
-
21
-
-
55749098965
-
A simulated-annealing based multiobjective optimization algorithm: Amosa
-
June
-
S. Bandyopadhyay, S. Saha, U. Maulik, and K. Deb, "A Simulated-Annealing Based Multiobjective Optimization Algorithm: AMOSA," IEEE Trans. Evolutionary Computing, vol. 12, no. 3, pp. 269-283, June 2008.
-
(2008)
IEEE Trans. Evolutionary Computing
, vol.12
, Issue.3
, pp. 269-283
-
-
Bandyopadhyay, S.1
Saha, S.2
Maulik, U.3
Deb, K.4
-
22
-
-
0036530772
-
A fast and elitist multiobjective genetic algorithm: NSGA-II
-
DOI 10.1109/4235.996017, PII S1089778X02041012
-
K. Deb, A. Pratap, S. Agarwal, and T. Meyarivan, "A Fast and Elitist Multiobjective Genetic Algorithm: NSGA-II," IEEE Trans. Evolutionary Computing, vol. 6, no. 2, pp. 182-197, Apr. 2002. (Pubitemid 34555372)
-
(2002)
IEEE Transactions on Evolutionary Computation
, vol.6
, Issue.2
, pp. 182-197
-
-
Deb, K.1
Pratap, A.2
Agarwal, S.3
Meyarivan, T.4
-
23
-
-
84861501907
-
The newlead program: A new method for the design of candidate structures from pharmacophoric hypo thesis
-
V. Tschinke and N.C. Cohen, "The NEWLEAD Program: A New Method for the Design of Candidate Structures from Pharmacophoric Hypothesis," J. Medicinal Chemistry, vol. 45, pp. 1834-1837, 2006.
-
(2006)
J. Medicinal Chemistry
, vol.45
, pp. 1834-1837
-
-
Tschinke, V.1
Cohen, N.C.2
-
25
-
-
85133775397
-
A comprehensive survey of evolutionary-based multiobjective optimization techniques
-
C.A.C. Coello, "A Comprehensive Survey of Evolutionary-Based Multiobjective Optimization Techniques," Knowledge and Information Systems, vol. 1, no. 3, pp. 671-680, 1999.
-
(1999)
Knowledge and Information Systems
, vol.1
, Issue.3
, pp. 671-680
-
-
Coello, C.A.C.1
-
27
-
-
33847071304
-
Crystallographic and Mutational Studies of Mycobacterium tuberculosis recA Mini-inteins Suggest a Pivotal Role for a Highly Conserved Aspartate Residue
-
DOI 10.1016/j.jmb.2006.12.050, PII S0022283606017281
-
P.V. Roey, B. Pereira, Z. Li, K. Hiraga, M. Belfort, and V. Derbyshire, "Crystallographic and Mutational Studies of Mycobacterium Tuberculosis Reca Mini-Inteins Suggest a Pivotal Role for a Highly Conserved Aspartate Residue," J. Molecular Bilogy, vol. 367, pp. 162-73, 2007. (Pubitemid 46274715)
-
(2007)
Journal of Molecular Biology
, vol.367
, Issue.1
, pp. 162-173
-
-
Van Roey, P.1
Pereira, B.2
Li, Z.3
Hiraga, K.4
Belfort, M.5
Derbyshire, V.6
-
28
-
-
18744394070
-
Q-SiteFinder: An energy-based method for the prediction of protein-ligand binding sites
-
DOI 10.1093/bioinformatics/bti315
-
A. Laurie and R. Jackson, "Q-Sitefinder: An Energy-Based Method for the Prediction of Protein-Ligand Binding Site," Bioinformatics, vol. 21, no. 9, pp. 1908-1916, 2005. (Pubitemid 40668026)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 1908-1916
-
-
Laurie, A.T.R.1
Jackson, R.M.2
-
30
-
-
0000873042
-
Flexible ligand docking using a robust evolutionary algorithm
-
J.M. Yang and C.Y. Kao, "Flexible Ligand Docking Using a Robust Evolutionary Algorithm," J. Computational Chemistry, vol. 21, pp. 988-998, 2000.
-
(2000)
J. Computational Chemistry
, vol.21
, pp. 988-998
-
-
Yang, J.M.1
Kao, C.Y.2
-
32
-
-
0033820007
-
Calculating partition coefficient by atom-additive method
-
R. Wang, Y. Gao, and L. Lai, "Calculating Partition Coefficient by Atom-Additive Method," Perspectives in Drug Discovery and Design, vol. 19, pp. 47-66, 1999.
-
(1999)
Perspectives in Drug Discovery and Design
, vol.19
, pp. 47-66
-
-
Wang, R.1
Gao, Y.2
Lai, L.3
-
33
-
-
0343188817
-
Autodigestion of lexA and phage λ repressors
-
J. Little, "Autodigestion of lexA and phage lambda repressors," Proc. Nat'l Academy of Sciences USA, vol. 81, no. 5, pp. 1375-1379, 1984. (Pubitemid 14173472)
-
(1984)
Proceedings of the National Academy of Sciences of the United States of America
, vol.81
, Issue.3
, pp. 1375-1379
-
-
Little, J.W.1
-
34
-
-
4844225821
-
Quantitative indices and pattern classification
-
Oct.
-
S. Bandyopadhyay, S.K. Pal, and B. Aruna, "Quantitative Indices and Pattern Classification," IEEE Trans. Systems, Man and Cybernatics-B, vol. 34, no. 5, pp. 2088-2099, Oct. 2004.
-
(2004)
IEEE Trans. Systems, Man and Cybernatics-B
, vol.34
, Issue.5
, pp. 2088-2099
-
-
Bandyopadhyay, S.1
Pal, S.K.2
Aruna, B.3
-
35
-
-
65349153218
-
Balance between local search and memetic search in memetic algorithms for multiobjective permutation flowshop scheduling
-
H. Ishibuchi, T. Yoshida, and T. Murata, "Balance Between Local Search and Memetic Search in Memetic Algorithms for Multiobjective Permutation Flowshop Scheduling," IEEE Trans. Evolutionary Computation, vol. 6, pp. 721-741, 1984.
-
(1984)
IEEE Trans. Evolutionary Computation
, vol.6
, pp. 721-741
-
-
Ishibuchi, H.1
Yoshida, T.2
Murata, T.3
-
39
-
-
0035498337
-
Qsar and k-nearest neighbor classification analysis of selective cyclooxygenase-2 inhibitors using topologically-based numerical descriptors
-
G.W. Kauffman and P.C. Jurs, "Qsar and k-Nearest Neighbor Classification Analysis of Selective Cyclooxygenase-2 Inhibitors Using Topologically-Based Numerical Descriptors," J. Chemical Information and Modelling, vol. 41, pp. 1553-1560, 2001.
-
(2001)
J. Chemical Information and Modelling
, vol.41
, pp. 1553-1560
-
-
Kauffman, G.W.1
Jurs, P.C.2
-
40
-
-
76749092270
-
The weka data mining software: An update
-
M. Hall, E. Frank, G. Holmes, B. Pfahringer, P. Reutemann, and I.H. Witten, "The WEKA Data Mining Software: An Update," SIGKDD Explorations, vol. 11, pp. 10-18, 2009.
-
(2009)
SIGKDD Explorations
, vol.11
, pp. 10-18
-
-
Hall, M.1
Frank, E.2
Holmes, G.3
Pfahringer, B.4
Reutemann, P.5
Witten, I.H.6
-
41
-
-
27344459398
-
Virtual computational chemistry laboratory - Design and description
-
DOI 10.1007/s10822-005-8694-y
-
I.V. Tetko, J. Gasteiger, R. Todeschini, A. Mauri, D. Livingstone, P. Ertl, V.A. Palyulin, E.V. Radchenko, N.S. Zefirov, A.S. Makarenko, V.Y. Tanchuk, and V.V. Prokopenko, "Virtual Computational Chemistry Laboratory-Design and Description," J. Computer-Aided Molecular Design, vol. 19, pp. 453-63, 2005. (Pubitemid 41613292)
-
(2005)
Journal of Computer-Aided Molecular Design
, vol.19
, Issue.6
, pp. 453-463
-
-
Tetko, I.V.1
Gasteiger, J.2
Todeschini, R.3
Mauri, A.4
Livingstone, D.5
Ertl, P.6
Palyulin, V.A.7
Radchenko, E.V.8
Zefirov, N.S.9
Makarenko, A.S.10
Tanchuk, V.Yu.11
Prokopenko, V.V.12
|