GIGANTEA and EARLY FLOWERING 4 in arabidopsis exhibit differential phase-specific genetic influences over a diurnal cycle

Molecular Plant

Volumn 5, Issue 3, 2012, Pages 678-687

  Kim, Yumi ^a   Yeom, Miji ^a   Kim, Hyunmin ^a   Lim, Junhyun ^a   Koo, Hee Jung ^a   Hwang, Daehee ^a   Somers, David ^a,b   Nam, Hong Gil ^a  

^a Pohang University of Science and Technology (POSTECH)   (South Korea)

^b OHIO STATE UNIVERSITY   (United States)

Author keywords

ELF4; endogenous clock; GI; LHY; microarray

Indexed keywords

ARABIDOPSIS;

EID: 84861401508     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1093/mp/sss005     Document Type: Article

References (48)

1. Alabadi, D., Oyama, T., Yanovsky, M.J., Harmon, F.G., Mas, P., and Kay, S.A. (2001). Reciprocal regulation between TOC1 and LHY/ CCA1within theArabidopsis circadian clock. Science. 293, 880-883.
2. Bolstad, B.M., Irizarry, R.A., Astrand, M., and Speed, T.P. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 19, 185-193.
3. David, K.M., Armbruster, U., Tama, N., and Putterill, J. (2006). Arabidopsis GIGANTEA protein is post-transcriptionally regulated by light and dark. FEBS Lett. 580, 1193-1197.
4. de Montaigu, A., Toth, R., and Coupland, G. (2010). Plant development goes like clockwork. Trends Genet. 26, 296-306.
5. Dodd, A.N., et al. (2005). Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science. 309, 630-633.
6. Dowson-Day, M.J., and Millar, A.J. (1999). Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant J. 17, 63-71.
7. Doyle, M.R., et al. (2002). The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature. 419, 74-77.
8. Edwards, K.D., et al. (2006). FLOWERING LOCUS C mediates natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell. 18, 639-650.
9. Fornara, F., de Montaigu, A., and Coupland, G. SnapShot: Control of flowering in Arabidopsis. Cell. 141, 550, 550, e551-e552.
10. Fowler, S., et al. (1999). GIGANTEA: A circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains. EMBO J. 18, 4679-4688.
11. Hall, A., et al. (2003). The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell. 15, 2719-2729.
12. Hall, A.J.W., and McWatters, H. (2005). Endogenous Plant Rhythms (Oxford and Ames, IA: Blackwell Pub.).
13. Harmer, S.L. (2009). The circadian system in higher plants. Annu. Rev. Plant Biol. 60, 357-377.
14. Hecht, V., et al. (2007). Pea LATE BLOOMER1 is a GIGANTEA ortholog with roles in photoperiodic flowering, deetiolation, and transcriptional regulation of circadian clock gene homologs. Plant Physiol. 144, 648-661.
15. Huang da, W., Sherman, B.T., and Lempicki, R.A. (2009). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols. 4, 44-57.
16. Huq, E., Tepperman, J.M., and Quail, P.H. (2000). GIGANTEA is a nuclear protein involved in phytochrome signaling in Arabidopsis. Proc. Natl Acad. Sci. U S A. 97, 9789-9794.
17. Hwang, D., et al. (2005). A data integration methodology for systems biology. Proc. Natl Acad. Sci. U S A. 102, 17296-17301.
18. Khanna, R., Kikis, E.A., and Quail, P.H. (2003). EARLY FLOWERING 4 functions in phytochrome B-regulated seedling de-etiolation. Plant Physiol. 133, 1530-1538.
19. Kikis, E.A., Khanna, R., and Quail, P.H. (2005). ELF4 is a phytochrome- regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY. Plant J. 44, 300-313.
20. Kim, J., Kim, Y., Yeom, M., Kim, J.H., and Nam, H.G. (2008). FIONA1 is essential for regulating period length in the Arabidopsis circadian clock. Plant Cell. 20, 307-319.
21. Kim, W.Y., et al. (2007). ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light. Nature. 449, 356-360.
22. Kolmos, E., et al. (2009). Integrating ELF4 into the circadian system through combined structural and functional studies. HFSP J. 3, 350-366.
23. Koornneef, M., Hanhart, C.J., and van der Veen, J.H. (1991). A genetic and physiological analysis of late flowering mutants in Arabidopsis thaliana. Mol. Gen. Genet. 229, 57-66.
24. Lee, H.J., et al. (2010). Direct transfer of alpha-synuclein from neuron to astroglia causes inflammatory responses in synucleinopathies. J. Biol. Chem. 285, 9262-9272.
25. Liew, L.C., et al. (2009). DIE NEUTRALIS and LATE BLOOMER 1 contribute to regulation of the pea circadian clock. Plant Cell. 21, 3198-3211.
26. Locke, J.C., et al. (2006). Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Mol. Syst. Biol. 2, 59.
27. Locke, J.C., et al. (2005a). Extension of a genetic network model by iterative experimentation and mathematical analysis. Mol. Syst. Biol. 1, 0013.
28. Locke, J.C., Millar, A.J., and Turner, M.S. (2005b). Modelling genetic networks with noisy and varied experimental data: The circadian clock in Arabidopsis thaliana. J. Theor. Biol. 234, 383-393.
29. McWatters, H.G., Bastow, R.M., Hall, A., and Millar, A.J. (2000). The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature. 408, 716-720.
30. McWatters, H.G., et al. (2007). ELF4 is required for oscillatory properties of the circadian clock. Plant Physiol. 144, 391-401.
31. Mizoguchi, T., et al. (2005). Distinct roles of GIGANTEA in promoting flowering and regulating circadian rhythms in Arabidopsis. Plant Cell. 17, 2255-2270.
32. Mockler, T.C., et al. (2004). Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc. Natl Acad. Sci. U S A. 101, 12759-12764.
33. Mouradov, A., Cremer, F., and Coupland, G. (2002). Control of flowering time: Interacting pathways as a basis for diversity. Plant Cell. 14 Suppl, S111-S130.
34. Nozue, K., et al. (2007). Rhythmic growth explained by coincidence between internal and external cues. Nature. 448, 358-361.
35. Nusinow, D.A., et al. (2011). The ELF4-ELF3-LUX complex links the circadian clock to diurnal control of hypocotyl growth. Nature. 475, 398-402.
36. Park, D.H., et al. (1999). Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene. Science. 285, 1579-1582.
37. Plautz, J.D., et al. (1997). Quantitative analysis of Drosophila period gene transcription in living animals. J. Biol. Rhythms. 12, 204-217.
38. Pokhilko, A., et al. (2010). Data assimilation constrains new connections and components in a complex, eukaryotic circadian clock model. Mol. Syst. Biol. 6, 416.
39. Sawa, M., and Kay, S.A. (2011). GIGANTEA directly activates Flowering Locus T in Arabidopsis thaliana. Proc. Natl Acad. Sci. U S A. 108, 11698-11703.
40. Sawa, M., Nusinow, D.A., Kay, S.A., and Imaizumi, T. (2007). FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis. Science. 318, 261-265.
41. Schaffer, R., et al. (1998). The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell. 93, 1219-1229.
42. Southern, M.M., and Millar, A.J. (2005). Circadian genetics in the model higher plant, Arabidopsis thaliana. Methods Enzymol. 393, 23-35.
43. Strayer, C., et al. (2000). Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science. 289, 768-771.
44. Suarez-Lopez, P., Wheatley, K., Robson, F., Onouchi, H., Valverde, F., and Coupland, G. (2001). CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature. 410, 1116-1120.
45. Valverde, F., Mouradov, A., Soppe,W., Ravenscroft, D., Samach, A., and Coupland, G. (2004). Photoreceptor regulation of CONSTANS protein in photoperiodic flowering. Science. 303, 1003-1006.
46. Young, M.W., and Kay, S.A. (2001). Time zones: A comparative genetics of circadian clocks. Nat. Rev. Genet. 2, 702-715.
47. Yu, J.W., et al. (2008). COP1 and ELF3 control circadian function and photoperiodic flowering by regulating GI stability. Mol. Cell. 32, 617-630.
48. Zeilinger, M.N., Farre, E.M., Taylor, S.R., Kay, S.A., and Doyle, F.J., III (2006). A novel computational model of the circadian clock in Arabidopsis that incorporates PRR7 and PRR9. Mol. Syst. Biol. 2, 58.