ELF4 is a phytochrome-regulated component of a negative-feedback loop involving the central oscillator components CCA1 and LHY

Plant Journal

Volumn 44, Issue 2, 2005, Pages 300-313

  Kikis, Elise A ^a,b   Khanna, Rajnish ^a,b   Quail, Peter H ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b WESTERN REGIONAL RESEARCH CENTER   (United States)

Author keywords

Circadian clock; ELF4; Light input; Phytochrome

Indexed keywords

DATA ACQUISITION; OSCILLATIONS; SEED; SIGNAL PROCESSING;

CIRCADIAN CLOCK; ELF4; LIGHT INPUT; PHYTOCHROME;

GENES;

DATA PROCESSING; GENES; SEEDS;

ARABIDOPSIS; VIRIDIPLANTAE;

ARABIDOPSIS PROTEIN; CCA1 PROTEIN, ARABIDOPSIS; DNA BINDING PROTEIN; EARLY FLOWERING 4 PROTEIN, ARABIDOPSIS; ELF3 PROTEIN, ARABIDOPSIS; LHY PROTEIN, ARABIDOPSIS; PHYTOCHROME; TOC1 PROTEIN, ARABIDOPSIS; TRANSCRIPTION FACTOR;

ARABIDOPSIS; ARTICLE; CIRCADIAN RHYTHM; DRUG EFFECT; FEEDBACK SYSTEM; GENE EXPRESSION REGULATION; GENETICS; LIGHT; METABOLISM; RADIATION EXPOSURE;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CIRCADIAN RHYTHM; DNA-BINDING PROTEINS; FEEDBACK, BIOCHEMICAL; GENE EXPRESSION REGULATION, PLANT; LIGHT; PHYTOCHROME; TRANSCRIPTION FACTORS;

EID: 33644814040     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2005.02531.x     Document Type: Article

References (42)

1. Alabadi D. Oyama T. Yanovsky M.J. Harmon F.G. Mas P. Kay S.A. ( 2001) Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock. Science, 293, 880 883.
2. Anderson S.L. Kay S.A. ( 1995) Functional dissection of circadian clock- and phytochrome-regulated transcription of the Arabidopsis CAB2 gene. Proc. Natl Acad. Sci. USA, 92, 1500 1504.
3. Anderson S.L. Somers D.E. Millar A.J. Hanson K. Chory J. Kay S.A. ( 1997) Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. Plant Cell, 9, 1727 1743.
4. Church G. Gilbert W. ( 1984) Genomic sequencing. Proc. Natl Acad. Sci. USA, 81, 1991 1995.
5. Covington M.F. Panda S. Liu X.L. Strayer C.A. Wagner D.R. Kay S.A. ( 2001) ELF3 modulates resetting of the circadian clock in Arabidopsis. Plant Cell, 13, 1305 1315.
6. Doyle M.R. Davis S.J. Bastow R.M. McWatters H.G. Kozma-Bognar L. Nagy F. Millar A.J. Amasino R.M. ( 2002) The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana. Nature, 419, 74 77.
7. Eriksson M.E. Millar A.J. ( 2003) The circadian clock. A plant's best friend in a spinning world. Plant Physiol. 132, 732 738.
8. Farre E.M. Harmer S.L. Harmon F.G. Yanovsky M.J. Kay S.A. ( 2005) Overlapping and distinct roles of PRR7 and PRR9 in the Arabidopsis circadian clock. Curr. Biol. 15, 47 54.
9. Francois P. ( 2005) A model for the Neurospora circadian clock. Biophys J. 88, 2369 2383
10. Tobin E.M. ( 1999) Loss of the circadian clock-associated protein 1 in Arabidopsis results in altered clock-regulated gene expression. Proc. Natl Acad. Sci. USA, 96, 4176 4179.
11. Hall A. Bastow R.M. Davis S.J. et al. ( 2003) The TIME FOR COFFEE gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell, 15, 2719 2729.
12. Harmer S.L. Hogenesch J.B. Straume M. Chang H.S. Han B. Zhu T. Wang X. Kreps J.A. Kay S.A. ( 2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science, 290, 2110 2113.
13. Hayama R. Coupland G. ( 2004) The molecular basis of diversity in the photoperiodic flowering responses of Arabidopsis and rice. Plant Physiol. 135, 677 684.
14. Hicks K.A. Millar A.J. Carre I.A. Somers D.E. Straume M. Meeks-Wagner D.R. Kay S.A. ( 1996) Conditional circadian dysfunction of the Arabidopsis early-flowering 3 mutant. Science, 274, 790 792.
15. Hicks K.A. Albertson T.M. Wagner D.R. ( 2001) EARLY FLOWERING3 encodes a novel protein that regulates circadian clock function and flowering in Arabidopsis. Plant Cell, 13, 1281 1292.
16. Hoecker U. Tepperman J.M. Quail P.H. ( 1999) SPA1, a WD-repeat protein specific to phytochrome A signal transduction. Science, 284, 496 499.
17. Kaczorowski K.A. ( 2004) Mutants in phytochrome-dependent seedling photomorphogenesis and control of the Arabidopsis circadian clock. PhD thesis, University of California, Berkeley, CA, USA
18. Quail P.H. ( 2003) Arabidopsis PSEUDO-RESPONSE REGULATOR7 is a signaling intermediate in phytochrome-regulated seedling de-etiolation and phasing of the circadian clock. Plant Cell, 15, 2654 2665.
19. Khanna R. Lin X. Watson J.C. ( 1999) Photoregulated expression of the PsPK3 and PsPK5 genes in pea seedlings. Plant Mol. Biol. 39, 231 242.
20. Khanna R. Kikis E.A. Quail P.H. ( 2003) EARLY FLOWERING 4 functions in phytochrome B-regulated seedling de-etiolation. Plant Physiol. 133, 1530 1538.
21. Kolar C. Fejes E. Adam E. Schafer E. Kay S. Nagy F. ( 1998) Transcription of Arabidopsis and wheat Cab genes in single tobacco transgenic seedlings exhibits independent rhythms in a developmentally regulated fashion. Plant J. 13, 563 569.
22. Locke J.C. Millar A.J. Turner M.S. ( 2005) Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J. Theor. Biol. 234, 383 393.
23. McWatters H.G. Bastow R.M. Hall A. Millar A.J. ( 2000) The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature, 408, 716 720.
24. Millar A.J. Kay S.A. ( 1996) Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc. Natl Acad. Sci. USA, 93, 15491 15496.
25. Millar A.J. Short S.R. Chua N.H. Kay S.A. ( 1992) A novel circadian phenotype based on firefly luciferase expression in transgenic plants. Plant Cell, 4, 1075 1087.
26. Millar A.J. Carre I.A. Strayer C.A. Chua N.H. Kay S.A. ( 1995) Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science, 267, 1161 1163.
27. Mizoguchi T. Wheatley K. Hanzawa Y. Wright L. Mizoguchi M. Song H.R. Carre I.A. Coupland G. ( 2002) LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. Dev Cell, 2, 629 641.
28. Nakamichi N. Kita M. Ito S. Yamashino T. Mizuno T. ( 2005) PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, together play essential roles close to the circadian clock of Arabidopsis thaliana. Plant Cell Physiol. 46, 686 698.
29. Preitner N. Damiola F. Lopez-Molina L. Zakany J. Duboule D. Albrecht U. Schibler U. ( 2002) The orphan nuclear receptor REV-ERBalpha controls circadian transcription within the positive limb of the mammalian circadian oscillator. Cell, 110, 251 260.
30. Schaffer R. Ramsay N. Samach A. Corden S. Putterill J. Carre I.A. Coupland G. ( 1998) The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell, 93, 1219 1229.
31. Somers D.E. Devlin P.F. Kay S.A. ( 1998a) Phytochromes and cryptochromes in the entrainment of the Arabidopsis circadian clock. Science, 282, 1488 1490.
32. Somers D.E. Webb A.A. Pearson M. Kay S.A. ( 1998b) The short-period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development, 125, 485 494.
33. Strayer C. Oyama T. Schultz T.F. Raman R. Somers D.E. Mas P. Panda S. Kreps J.A. Kay S.A. ( 2000) Cloning of the Arabidopsis clock gene TOC1, an autoregulatory response regulator homolog. Science, 289, 768 771.
34. Suarez-Lopez P. Wheatley K. Robson F. Onouchi H. Valverde F. Coupland G. ( 2001) CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis. Nature, 410, 1116 1120.
35. Tepperman J.M. Zhu T. Chang H.S. Wang X. Quail P.H. ( 2001) Multiple transcription-factor genes are early targets of phytochrome A signaling. Proc. Natl Acad. Sci. USA, 98, 9437 9442.
36. Valverde F. Mouradov A. Soppe W. Ravenscroft D. Samach A. Coupland G. ( 2004) Photoreceptor regulation of CONSTANS protein in photoperiodic flowering. Science, 303, 1003 1006.
37. Van Gelder R.N. Herzog E.D. Schwartz W.J. Taghert P.H. ( 2003) Circadian rhythms: in the loop at last. Science, 300, 1534 1535.
38. Wang Z.Y. Tobin E.M. ( 1998) Constitutive expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) gene disrupts circadian rhythms and suppresses its own expression. Cell, 93, 1207 1217.
39. Wang Z.Y. Kenigsbuch D. Sun L. Harel E. Ong M.S. Tobin E.M. ( 1997) A Myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell, 9, 491 507.
40. Welsh D.K. Yoo S.H. Liu A.C. Takahashi J.S. Kay S.A. ( 2004) Bioluminescence imaging of individual fibroblasts reveals persistent, independently phased circadian rhythms of clock gene expression. Curr. Biol. 14, 2289 2295.
41. Zhong H.H. Young J.C. Pease E.A. Hangarter R.P. McClung C.R. ( 1994) Interactions between light and the circadian clock in the regulation of CAT2 expression in Arabidopsis. Plant Physiol. 104, 889 898.
42. Zhong H.H. Painter J.E. Salome P.A. Straume M. McClung C.R. ( 1998) Imbibition, but not release from stratification, sets the circadian clock in Arabidopsis seedlings. Plant Cell, 10, 2005 2017.