-
1
-
-
33751561773
-
Tight binding of NADPH to the 39-kDa subunit of complex I is not required for catalytic activity but stabilizes the multiprotein complex
-
DOI 10.1016/j.bbabio.2006.09.003, PII S0005272806002775
-
Abdrakhmanova A, Zwicker K, Kerscher S, Zickermann V, Brandt U: Tight binding of NADPH to the 39-kDa subunit of complex I is not required for catalytic activity but stabilizes the multiprotein complex. Biochim Biophys Acta 2006; 1757: 1676-1682. (Pubitemid 44841959)
-
(2006)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1757
, Issue.12
, pp. 1676-1682
-
-
Abdrakhmanova, A.1
Zwicker, K.2
Kerscher, S.3
Zickermann, V.4
Brandt, U.5
-
2
-
-
33747892409
-
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
-
DOI 10.1093/bioinformatics/btl213
-
Alexeyenko A, Tamas I, Liu G, Sonnhammer ELL: Automatic clustering of orthologous and inparalogs shared by multiple pro-teomes. Bioinformatics 2006; 22:e9-e15. (Pubitemid 44288267)
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Alexeyenko, A.1
Tamas, I.2
Liu, G.3
Sonnhammer, E.L.L.4
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acid Res 1997; 25: 3389-3402. (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
6
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
DOI 10.1016/j.jmb.2004.05.028, PII S0022283604005972
-
Bendtsen JD, Nielsen H, Von Heijne G, Brunak S: Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 2004; 340: 783-795. (Pubitemid 38829638)
-
(2004)
Journal of Molecular Biology
, vol.340
, Issue.4
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
Von Heijne, G.3
Brunak, S.4
-
7
-
-
0028807043
-
The Deletion of petG in Chlamydomonas reinhardtii disrupts the cytochrome bf complex
-
Berthold DA, Christian L, Schmidt CL, Malkin R: The Deletion of petG in Chlamydomonas reinhardtii disrupts the cytochrome bf complex. J Biol Chem 1995; 270: 29293-29298.
-
(1995)
J Biol Chem
, vol.270
, pp. 29293-29298
-
-
Berthold, D.A.1
Christian, L.2
Schmidt, C.L.3
Malkin, R.4
-
9
-
-
0028302337
-
Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions
-
Bjellqvist B, Basse B, Olsen E, Celis JE: Reference points for comparisons of two-dimensional maps of proteins from different human cell types defined in a pH scale where isoelectric points correlate with polypeptide compositions. Electrophoresis 1994; 15: 529-539. (Pubitemid 24151853)
-
(1994)
Electrophoresis
, vol.15
, Issue.3-4
, pp. 529-539
-
-
Bjellqvist, B.1
Basse, B.2
Olsen, E.3
Celis, J.E.4
-
10
-
-
0034992824
-
Design and performance of rRNA targeted oligonucleotide probes for in situ detection and phylogenetic identification of microorganisms inhabiting acid mine drainage environments
-
Bond PL, Banfield JF: Design and Performance of rRNA Targeted Oligonucleotide Probes for in Situ Detection and Phylogenetic Identification of Microorganisms Inhabiting Acid Mine Drainage Environments. Microb Ecol 2001; 41: 149-161. (Pubitemid 32497472)
-
(2001)
Microbial Ecology
, vol.41
, Issue.2
, pp. 149-161
-
-
Bond, P.L.1
Banfield, J.F.2
-
11
-
-
0037056056
-
1 complex?
-
DOI 10.1016/S0005-2728(02)00251-7, PII S0005272802002517
-
Brasseur G, Bruscella P, Bonnefoy V, Lemesle-Meunier D: The bc(1) complex of the iron-grown acidophilic chemolithotrophic bac ter iu m Acidithiobacillu s fe r roox id an s functions in the reverse but not in the forward direction. Is there a second bc(1) complex? Biochim Biophys Acta 2002; 1555: 37-43. (Pubitemid 35246002)
-
(2002)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1555
, Issue.1-3
, pp. 37-43
-
-
Brasseur, G.1
Bruscella, P.2
Bonnefoy, V.3
Lemesle-Meunier, D.4
-
12
-
-
2642582298
-
1 complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans
-
DOI 10.1016/j.bbabio.2004.02.008, PII S0005272804000441
-
Brasseur G, Levicán G, Bonnefoy V, Holmes D, Jedlicki E, Lemesle-Meunier D: Apparent redundancy of electron transfer pathways via bc(1) complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidi-thiobacillus ferrooxidans. Biochim Biophys Acta 2004; 1656: 114-126. (Pubitemid 38721273)
-
(2004)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1656
, Issue.2-3
, pp. 114-126
-
-
Brasseur, G.1
Levican, G.2
Bonnefoy, V.3
Holmes, D.4
Jedlicki, E.5
Lemesle-Meunier, D.6
-
13
-
-
33846326537
-
1 complexes in the strict acidophilic chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans suggests a model for their respective roles in iron or sulfur oxidation
-
DOI 10.1099/mic.0.2006/000067-0
-
1 complexes in the strict acidophilic chemolithoautotro-phic bacterium Acidithiobacillus ferrooxi-dans suggests a model for their respective roles in iron or sulfur oxidation. Microbiology 2007; 153: 102-110. (Pubitemid 46111825)
-
(2007)
Microbiology
, vol.153
, Issue.1
, pp. 102-110
-
-
Bruscella, P.1
Appia-Ayme, C.2
Levican, G.3
Ratouchniak, J.4
Jedlicki, E.5
Holmes, D.S.6
Bonnefoy, V.7
-
14
-
-
77349123810
-
Evolution of electron transfer out of the cell: Comparative genomics of six Geobacter genomes
-
Butler JE, Young ND, Lovley DR: Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes. BMC Genomics 2010; 11: 40.
-
(2010)
BMC Genomics
, vol.11
, pp. 40
-
-
Butler, J.E.1
Young, N.D.2
Lovley, D.R.3
-
15
-
-
38349019880
-
Periplasmic proteins of the extremophile Acidithiobacil-lus ferrooxidans
-
Chi A, Valenzuela L, Beard S, Mackey AJ, Sha-banowitz J, Hunt DF, Jerez CA: Periplasmic proteins of the extremophile Acidithiobacil-lus ferrooxidans. Mol Cel Proteomic 2007; 6: 2239-2251.
-
(2007)
Mol Cel Proteomic
, vol.6
, pp. 2239-2251
-
-
Chi, A.1
Valenzuela, L.2
Beard, S.3
MacKey, A.J.4
Sha-Banowitz, J.5
Hunt, D.F.6
Jerez, C.A.7
-
16
-
-
0032169271
-
Conservation of gene order: A fingerprint of proteins that physically interact
-
DOI 10.1016/S0968-0004(98)01274-2, PII S0968000498012742
-
Dandekar T, Snel B, Huynen M, Bork P: Conservat ion of gene order: a f ingerpr int of proteins that physically interact. Trends Biochem Sci 1998; 23: 324-328. (Pubitemid 28461862)
-
(1998)
Trends in Biochemical Sciences
, vol.23
, Issue.9
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
17
-
-
77955822694
-
Structural and functional characterization of CcmG from Pseudomonas aeruginosa, a key component of the bacterial cytochrome c maturation apparatus
-
Di Matteo A, Calosci N, Gianni S, Jemth P, Brunori M, Travaglini-Allocatelli C: Structural and functional characterization of CcmG from Pseudomonas aeruginosa, a key component of the bacterial cytochrome c maturation apparatus. Proteins 2010; 78: 2213-2221.
-
(2010)
Proteins
, vol.78
, pp. 2213-2221
-
-
Di Matteo, A.1
Calosci, N.2
Gianni, S.3
Jemth, P.4
Brunori, M.5
Travaglini-Allocatelli, C.6
-
18
-
-
0034123440
-
1 and NADH-Q oxidoreductase complexes of the acidophilic obligate chemolithotrophic ferrous ion-oxidizing bacterium Thiobacillus ferrooxidans
-
DOI 10.1128/JB.182.12.3602-3606.2000
-
Elbehti A, Brasseur G, Lemesle-Meunier D: First evidence for existence of an uphill electron transfer through the bc(1) and NADH-Q ox-idoreductase complexes of the acidophilic obligate chemolithotrophic ferrous ion-oxidizing bacterium Thiobacillus ferrooxidans. J Bacteriol 2000; 182: 3602-3606. (Pubitemid 30341628)
-
(2000)
Journal of Bacteriology
, vol.182
, Issue.12
, pp. 3602-3606
-
-
Elbehti, A.1
Brasseur, G.2
Lemesle-Meunier, D.3
-
19
-
-
67649576309
-
Community ge-nomic and proteomic analyses of chemoau-totrophic iron-oxidizing ' Leptospirillum rubarum ' (group II) and ' Leptospirillum fer-rodiazotrophum ' (group III) bacteria in acid mine drainage biofilms
-
Goltsman DS, Denef VJ, Singer SW, VerBerk-moes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, Hettich RL, Banfield JF: Community ge-nomic and proteomic analyses of chemoau-totrophic iron-oxidizing ' Leptospirillum rubarum ' (group II) and ' Leptospirillum fer-rodiazotrophum ' (group III) bacteria in acid mine drainage biofilms. Appl Environ Mi-crobiol 2009; 75: 4599-4615.
-
(2009)
Appl Environ Mi-crobiol
, vol.75
, pp. 4599-4615
-
-
Goltsman, D.S.1
Denef, V.J.2
Singer, S.W.3
Verberk-Moes, N.C.4
Lefsrud, M.5
Mueller, R.S.6
Dick, G.J.7
Sun, C.L.8
Wheeler, K.E.9
Zemla, A.10
Baker, B.J.11
Hauser, L.12
Land, M.13
Shah, M.B.14
Thelen, M.P.15
Hettich, R.L.16
Banfield, J.F.17
-
20
-
-
74549125386
-
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M, Guindon S, Gascuel O: SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 2010; 27: 221-224.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
21
-
-
0034116376
-
The PAS superfamily: Sensors of environmental and developmental signals
-
Gu YZ, Hogenesch JB, Bradfield CA: The PAS superfamily: sensors of environmental and developmental signals. Annu Rev Pharmacol Toxicol 2000; 40: 519-961.
-
(2000)
Annu Rev Pharmacol Toxicol
, vol.40
, pp. 519-961
-
-
Gu, Y.Z.1
Hogenesch, J.B.2
Bradfield, C.A.3
-
22
-
-
0034045260
-
Molecular cloning, sequencing, and expression of omp-40, the gene coding for the major outer membrane protein from the acidophilic bacterium Thiobacillus ferrooxidans
-
DOI 10.1128/AEM.66.6.2318-2324.2000
-
Guiliani N, Jerez C: Molecular cloning, sequencing, and expression of omp-40, the gene coding for the major outer membrane protein from the acidophilic bacterium Thiobacillus ferrooxidans. App Environ Microbiol 2000; 66: 2318-2324. (Pubitemid 30353932)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.6
, pp. 2318-2324
-
-
Guiliani, N.1
Jerez, C.A.2
-
23
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O: New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 2010; 59: 307-321.
-
(2010)
Systematic Biology
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
24
-
-
0000207681
-
TMbase-A database of membr a ne spa n ning protei ns segments
-
Hofmann K, Stoffel W: TMbase-A database of membr a ne spa n ning protei ns segments. Biol Chem Hoppe-Seyler 1993; 374: 166.
-
(1993)
Biol Chem Hoppe-Seyler
, vol.374
, pp. 166
-
-
Hofmann, K.1
Stoffel, W.2
-
25
-
-
84920081702
-
Genetic and bioinfor-matic insights into iron and sulfur oxidation mechanisms of bioleaching organisms
-
Rawlings D, Johnson DB (eds) Berlin Springer
-
Holmes DS, Bonnefoy V: Genetic and bioinfor-matic insights into iron and sulfur oxidation mechanisms of bioleaching organisms; in Rawlings D, Johnson DB (eds): Biomining. Berlin, Springer, 2006, pp 281-307.
-
(2006)
Biomining
, pp. 281-307
-
-
Holmes, D.S.1
Bonnefoy, V.2
-
26
-
-
0020372284
-
Thiobacillus ferrooxidans. The bioenergetics of an acidophilic chemolithotroph
-
Ingledew WJ: Thiobacillus ferrooxidans the bioenergetics of an acidophilic chemoli-thotroph. Biochem Biophys Acta 1982; 683: 89-117. (Pubitemid 13176562)
-
(1982)
Biochimica et Biophysica Acta
, vol.683
, Issue.2
, pp. 89-117
-
-
Ingledew, W.J.1
-
27
-
-
43449096010
-
Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community
-
DOI 10.1038/ismej.2008.17, PII ISMEJ200817
-
Jeans C, Singer SW, Chan CS, Verberkmoes NC, Shah M, Hettich RL, Banfield JF, Thelen MP: Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. ISME J 2008; 2: 542-550. (Pubitemid 351666973)
-
(2008)
ISME Journal
, vol.2
, Issue.5
, pp. 542-550
-
-
Jeans, C.1
Singer, S.W.2
Chan, C.S.3
VerBerkmoes, N.C.4
Shah, M.5
Hettich, R.L.6
Banfield, J.F.7
Thelen, M.P.8
-
29
-
-
0036179203
-
Characterization of the petI and res operons of Acidithiobacillus ferrooxidans
-
Levicán G, Bruscella P, Guacucano M, Inostroza C, Bonnefoy V, Holmes DS, Jed l icki E: Cha r-acterization of the petI and res operons of Acidithiobacillus ferrooxidans. J Bacteriol 2002; 184: 1498-1501. (Pubitemid 34157580)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.5
, pp. 1498-1501
-
-
Levican, G.1
Bruscella, P.2
Guacunano, M.3
Inostroza, C.4
Bonnefoy, V.5
Holmes, D.S.6
Jedlicki, E.7
-
30
-
-
0035700860
-
Structural and redox properties of the leaderless DsbE (CcmG) protein: Both active-site cysteines of the reduced form are involved in its function in the Escherichia coli periplasm
-
DOI 10.1515/BC.2001.203
-
Li Q, Hu HY, Wang WQ, Xu GJ: Structural and redox properties of the leaderless DsbE (CcmG) protein: both active-site cysteines of the reduced form are involved in its function in the Escherichia coli periplasm. Biol Chem 2001; 382: 1679-1686. (Pubitemid 34100599)
-
(2001)
Biological Chemistry
, vol.382
, Issue.12
, pp. 1679-1686
-
-
Li, Q.1
Hu, H.-Y.2
Wang, W.-Q.3
Xu, G.-J.4
-
31
-
-
44349126251
-
Extracellular electron transfer: Wires, capacitors, iron lungs, and more
-
DOI 10.1111/j.1472-4669.2008.00148.x
-
Lovley DR: Extracellular electron transfer: wires, capacitors, iron lungs, and more. Geo-biology 2008; 6: 225-231. (Pubitemid 351733124)
-
(2008)
Geobiology
, vol.6
, Issue.3
, pp. 225-231
-
-
Lovley, D.R.1
-
32
-
-
0001827294
-
Iron and mineral oxidation by acidophilic bacteria: Affinities for iron and attachment to pyrite
-
Norris PR, Kelly DP (eds)
-
Norris PR, Barr DW, Hinson D: Iron and mineral oxidation by acidophilic bacteria: affinities for iron and attachment to pyrite; in Norris PR, Kelly DP (eds): Biohydrometal-lurgy. Proc Int Symp, 1988, pp 43-59.
-
(1988)
Biohydrometal-lurgy. Proc Int Symp
, pp. 43-59
-
-
Norris, P.R.1
Barr, D.W.2
Hinson, D.3
-
33
-
-
33846110892
-
Analysis of environmental transcriptomes by DNA microarrays
-
DOI 10.1111/j.1462-2920.2006.01162.x
-
Parro V, Moreno-Paz M, González-Toril E: Analysis of environmental transcriptomes by DNA microarrays. Environ Microbiol 2007; 9: 453-464. (Pubitemid 46072131)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.2
, pp. 453-464
-
-
Parro, V.1
Moreno-Paz, M.2
Gonzalez-Toril, E.3
-
34
-
-
34249110125
-
The Escherichia coli yhjA gene, encoding a predicted cytochrome c peroxidase, is regulated by FNR and OxyR
-
DOI 10.1099/mic.0.2006/004838-0
-
Partridge JD, Poole RK, Green J: The Escherichia coli yhjA gene, encoding a predicted cyto-chrome c peroxidase, is regulated by FNR and OxyR. Microbiology 2007; 153: 1499-1507. (Pubitemid 46780006)
-
(2007)
Microbiology
, vol.153
, Issue.5
, pp. 1499-1507
-
-
Partridge, J.D.1
Poole, R.K.2
Green, J.3
-
36
-
-
21344465408
-
Microbiology: Community proteomics of a natural microbial biofilm
-
DOI 10.1126/science.
-
Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC 2nd, Shah M, Het-tich RL, Banfield JF: Community proteomics of a natural microbial biofilm. Science 2005; 308: 1915-1920. (Pubitemid 40941876)
-
(2005)
Science
, vol.308
, Issue.5730
, pp. 1915-1920
-
-
Ram, R.J.1
VerBerkmoes, N.C.2
Thelen, M.P.3
Tyson, G.W.4
Baker, B.J.5
Blake II, R.C.6
Shah, M.7
Hettich, R.L.8
Banfield, J.F.9
-
37
-
-
0032931552
-
Reasons why 'Leptospirillum'-like species rather than Thiobacillus ferrooxidans are the dominant iron-oxidizing bacteria in many commercial processes for the biooxidation of pyrite and related ores
-
Rawlings DE, Tributsch H, Hansford GS: Reasons why ' Leptospirillum '-like species rather t ha n Thiobacillu s ferroox id ans are the dominant iron-oxidizing bacteria in many commercial processes for the biooxidation of pyrite and related ores. Microbiology 1999; 145: 5-13. (Pubitemid 29043573)
-
(1999)
Microbiology
, vol.145
, Issue.1
, pp. 5-13
-
-
Rawlings, D.E.1
Tributsch, H.2
Hansford, G.S.3
-
38
-
-
1642480180
-
Bioleaching review part A: Progress in bioleaching: Fundamentals and mechanisms of bacterial metal sulfide oxidation
-
DOI 10.1007/s00253-003-1448-7
-
Rohwerder T, Gehrke T, Kinzler K, Sand W: Bio-leaching review. A. Progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation. Appl Microbiol Bio-technol 2003; 63: 239-248. (Pubitemid 38130572)
-
(2003)
Applied Microbiology and Biotechnology
, vol.63
, Issue.3
, pp. 239-248
-
-
Rohwerder, T.1
Gehrke, T.2
Kinzler, K.3
Sand, W.4
-
39
-
-
0036670757
-
The membrane-bound tetrahaem c-type cytochrome CymA interacts directly with the soluble fumarate reductase in Shewanella
-
DOI 10.1042/BST0300658
-
Schwalb C, Chapman SK, Reid GA: The membrane-bound tetrahaem c-type cytochrome CymA interacts directly with the soluble fu-marate reductase in Shewanella. Biochem Soc Trans 2002; 30: 658-662. (Pubitemid 35001620)
-
(2002)
Biochemical Society Transactions
, vol.30
, Issue.4
, pp. 658-662
-
-
Schwalb, C.1
Chapman, S.K.2
Reid, G.A.3
-
40
-
-
0000120520
-
ProDom: Automated clustering of homologous domains
-
Servant F, Bru C, Carrère S, Courcelle E, Gouzy J, Peyruc D, Kahn D: ProDom: automated clustering of homologous domains. Brief Bioinform 2002; 3: 246-251.
-
(2002)
Brief Bioinform
, vol.3
, pp. 246-251
-
-
Servant, F.1
Bru, C.2
Carrère, S.3
Courcelle, E.4
Gouzy, J.5
Peyruc, D.6
Kahn, D.7
-
41
-
-
0001290045
-
PROSITE: A documented database using patterns and profiles as motif descriptors
-
Sigrist CJA, Cerutti L, Hulo N, Gattiker A, Falquet L, Pagni M, Bairoch A, Bucher P: PROSITE: a documented database using patterns and profiles as motif descriptors. Brief Bioinform 2002; 3: 265-274.
-
(2002)
Brief Bioinform
, vol.3
, pp. 265-274
-
-
Sigrist, C.J.A.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
Pagni, M.6
Bairoch, A.7
Bucher, P.8
-
42
-
-
47749144837
-
Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community
-
DOI 10.1128/AEM.02799-07
-
Singer SW, Chan CS, Zemla A, VerBerkmoes NC, Hwang M, Hettich RL, Banfield JF, Thelen MP: Characterization of cytochrome 579, a n unusu a l c y tochrome isolated from an iron-oxidizing microbial community. Appl Environ Microbiol 2008; 74: 4454-4462. (Pubitemid 352031027)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.14
, pp. 4454-4462
-
-
Singer, S.W.1
Chan, C.S.2
Zemla, A.3
VerBerkmoes, N.C.4
Hwang, M.5
Hettich, R.L.6
Banfield, J.F.7
Thelen, M.P.8
-
43
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ, Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22: 4673-4680. (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
45
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
DOI 10.1038/nature02340
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev V V, Rubin EM, Rokhsar DS, Banfield JF: Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004; 428: 37-43. (Pubitemid 38332350)
-
(2004)
Nature
, vol.428
, Issue.6978
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
46
-
-
26844447711
-
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community
-
DOI 10.1128/AEM.71.10.6319-6324.2005
-
Tyson GW, Lo I, Baker BJ, Allen EE, Hugenholtz P, Banfield JF: Genome-directed isolation of the key nitrogen fixer Leptospirillum ferro-diazotrophum sp. nov. from an acidophilic microbial community. Appl Environ Micro-biol 2005; 71: 6319-6324. (Pubitemid 41456932)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.10
, pp. 6319-6324
-
-
Tyson, G.W.1
Lo, I.2
Baker, B.J.3
Allen, E.E.4
Hugenholtz, P.5
Banfield, J.F.6
-
49
-
-
77954199597
-
PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
-
Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FSL: PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bio-informatics 2010; 26: 1608-1615.
-
(2010)
Bio-informatics
, vol.26
, pp. 1608-1615
-
-
Yu, N.Y.1
Wagner, J.R.2
Laird, M.R.3
Melli, G.4
Rey, S.5
Lo, R.6
Dao, P.7
Sahinalp, S.C.8
Ester, M.9
Foster, L.J.10
Fsl, B.11
|