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Volumn 9, Issue 2, 2007, Pages 453-464

Analysis of environmental transcriptomes by DNA microarrays

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; CARBON; MESSENGER RNA; METAL; SODIUM CHLORIDE;

EID: 33846110892     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2006.01162.x     Document Type: Article
Times cited : (96)

References (52)
  • 1
    • 0036454109 scopus 로고    scopus 로고
    • Transcriptional analysis of the pst operon of Escherichia coli
    • Aguena, M., Yagil, E., and Spira, B. (2002) Transcriptional analysis of the pst operon of Escherichia coli. Mol Genet Genomics 268: 518-524.
    • (2002) Mol Genet Genomics , vol.268 , pp. 518-524
    • Aguena, M.1    Yagil, E.2    Spira, B.3
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W., and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0016078632 scopus 로고
    • Leptospirillum ferrooxidans and aspects of its autotrophic growth
    • Balashova, U.V., Vedina, I., Markosyan, G.E., and Zavarzin, G.A. (1974) Leptospirillum ferrooxidans and aspects of its autotrophic growth. Mikrobiologiya 43: 581-585.
    • (1974) Mikrobiologiya , vol.43 , pp. 581-585
    • Balashova, U.V.1    Vedina, I.2    Markosyan, G.E.3    Zavarzin, G.A.4
  • 4
    • 32544431583 scopus 로고    scopus 로고
    • Proteogenomic approaches for the molecular characterization of natural microbial communities
    • Banfield, J.F., Verberkmoes, N.C., Hettich, R.L., and Thelen, M.P. (2005) Proteogenomic approaches for the molecular characterization of natural microbial communities. OMICS 9: 301-333.
    • (2005) OMICS , vol.9 , pp. 301-333
    • Banfield, J.F.1    Verberkmoes, N.C.2    Hettich, R.L.3    Thelen, M.P.4
  • 5
    • 0032919458 scopus 로고    scopus 로고
    • Options available - from start to finish - for obtaining expression data by microarray
    • Bowtell, D.D. (1999) Options available - from start to finish - for obtaining expression data by microarray. Nat Genet 21: 25-32.
    • (1999) Nat Genet , vol.21 , pp. 25-32
    • Bowtell, D.D.1
  • 6
    • 0037735436 scopus 로고
    • Buchanan, R.E, and Gibbons, N.E, eds, 8th edn. Baltimore, MD, USA: The Williams and Wilkens
    • Buchanan, R.E., and Gibbons, N.E. (eds) (1974) Bergey's Manual of Determinative Bacteriology, 8th edn. Baltimore, MD, USA: The Williams and Wilkens.
    • (1974) Bergey's Manual of Determinative Bacteriology
  • 7
    • 0000526144 scopus 로고
    • Mineral theories of the origin of life and an iron sulphide example
    • Cairns-Smith, A.G., Hall, A.J., and Russell, M.J. (1992) Mineral theories of the origin of life and an iron sulphide example. Origins Life Evol Bios 22: 161-180.
    • (1992) Origins Life Evol Bios , vol.22 , pp. 161-180
    • Cairns-Smith, A.G.1    Hall, A.J.2    Russell, M.J.3
  • 8
    • 0033969301 scopus 로고    scopus 로고
    • Chaperone properties of bacterial elongation factor EF-G and initiation factor IF2
    • Caldas, T., Laalami, S., and Richarme, G. (2000) Chaperone properties of bacterial elongation factor EF-G and initiation factor IF2. J Biol Chem 275: 855-860.
    • (2000) J Biol Chem , vol.275 , pp. 855-860
    • Caldas, T.1    Laalami, S.2    Richarme, G.3
  • 9
    • 20544466181 scopus 로고    scopus 로고
    • Molecular approaches to the assessment of biodiversity in aquatic microbial communities
    • Dorigo, U., Volatier, L., and Humbert, J.F. (2005) Molecular approaches to the assessment of biodiversity in aquatic microbial communities. Water Res 39: 2207-2218.
    • (2005) Water Res , vol.39 , pp. 2207-2218
    • Dorigo, U.1    Volatier, L.2    Humbert, J.F.3
  • 11
    • 21344459291 scopus 로고    scopus 로고
    • Photo-oxidative stress in Rhodobacter sphaeroides: Protective role of carotenoids and expression of selected genes
    • Glaeser, J., and Klug, G. (2005) Photo-oxidative stress in Rhodobacter sphaeroides: protective role of carotenoids and expression of selected genes. Microbiology 151: 1927-1938.
    • (2005) Microbiology , vol.151 , pp. 1927-1938
    • Glaeser, J.1    Klug, G.2
  • 12
    • 2642538646 scopus 로고    scopus 로고
    • Pseudomonas putida mutants in the exbBexbDtonB gene cluster are hypersensitive to environmental and chemical stressors
    • Godoy, P., Ramos-Gonzalez, M.I., and Ramos, J.L. (2004) Pseudomonas putida mutants in the exbBexbDtonB gene cluster are hypersensitive to environmental and chemical stressors. Environ Microbiol 6: 605-610.
    • (2004) Environ Microbiol , vol.6 , pp. 605-610
    • Godoy, P.1    Ramos-Gonzalez, M.I.2    Ramos, J.L.3
  • 14
    • 33144468558 scopus 로고    scopus 로고
    • Removal of phosphates and fluorides from industrial wastewater
    • Grzmil, B., and Wronkowski, J. (2006) Removal of phosphates and fluorides from industrial wastewater. Desalination 189: 261-268.
    • (2006) Desalination , vol.189 , pp. 261-268
    • Grzmil, B.1    Wronkowski, J.2
  • 15
    • 0018970564 scopus 로고
    • Regulation of NAD+-and NADP+-linked isocitrate dehydrogenase in the obligate methylotrophic bacterium Pseudomonas W6
    • Hofmann, K.H., and Babel, W. (1980) Regulation of NAD+-and NADP+-linked isocitrate dehydrogenase in the obligate methylotrophic bacterium Pseudomonas W6. Z Allg Mikrobiol 20: 399-404.
    • (1980) Z Allg Mikrobiol , vol.20 , pp. 399-404
    • Hofmann, K.H.1    Babel, W.2
  • 16
    • 29244479524 scopus 로고    scopus 로고
    • Anabolic five subunit-type pyruvate: Ferredoxin oxidoreductase from Hydrogenobacter thermophilus TK-6
    • Ikeda, T., Ochiai, T., Morita, S., Nishiyama, A., Yamada, E., Arai, H., et al. (2006) Anabolic five subunit-type pyruvate: ferredoxin oxidoreductase from Hydrogenobacter thermophilus TK-6. Biochem Biophys Res Commun 340: 76-82.
    • (2006) Biochem Biophys Res Commun , vol.340 , pp. 76-82
    • Ikeda, T.1    Ochiai, T.2    Morita, S.3    Nishiyama, A.4    Yamada, E.5    Arai, H.6
  • 17
    • 0025266330 scopus 로고
    • Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation
    • Kang, P.J., and Craig, E.A. (1990) Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation. J Bacteriol 172: 2055-2064.
    • (1990) J Bacteriol , vol.172 , pp. 2055-2064
    • Kang, P.J.1    Craig, E.A.2
  • 18
    • 0027219719 scopus 로고
    • Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase
    • Keasling, J.D., Bertsch, L., and Kornberg, A. (1993) Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase. Proc Natl Acad Sci USA 90: 7029-7033.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 7029-7033
    • Keasling, J.D.1    Bertsch, L.2    Kornberg, A.3
  • 19
    • 10044266575 scopus 로고    scopus 로고
    • Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli
    • Keren, I., Shah, D., Spoering, A., Kaldalu, N., and Lewis, K. (2004) Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli. J Bacteriol 186: 8172-8180.
    • (2004) J Bacteriol , vol.186 , pp. 8172-8180
    • Keren, I.1    Shah, D.2    Spoering, A.3    Kaldalu, N.4    Lewis, K.5
  • 20
    • 0141702685 scopus 로고    scopus 로고
    • Novel insights into the role of potassium for osmoregulation in Halomonas elongata
    • Kraegeloh, A., and Kunte, H.J. (2002) Novel insights into the role of potassium for osmoregulation in Halomonas elongata. Extremophiles 6: 453-462.
    • (2002) Extremophiles , vol.6 , pp. 453-462
    • Kraegeloh, A.1    Kunte, H.J.2
  • 21
    • 0033826231 scopus 로고    scopus 로고
    • Roles of respiratory oxidases in protecting Escherichia coli K12 from oxidative stress
    • Lindqvist, A., Membrillo-Hernandez, J., Poole, R.K., and Cook, G.M. (2000) Roles of respiratory oxidases in protecting Escherichia coli K12 from oxidative stress. Antonie Van Leeuwenhoek 78: 23-31.
    • (2000) Antonie Van Leeuwenhoek , vol.78 , pp. 23-31
    • Lindqvist, A.1    Membrillo-Hernandez, J.2    Poole, R.K.3    Cook, G.M.4
  • 22
    • 0034997171 scopus 로고    scopus 로고
    • Microbial community composition and ecology of an acidic aquatic environment: The Tinto River, Spain
    • Lopez-Archilla, A.I., Marin, I., and Amils, R. (2001) Microbial community composition and ecology of an acidic aquatic environment: the Tinto River, Spain. Microb Ecol 41: 20-35.
    • (2001) Microb Ecol , vol.41 , pp. 20-35
    • Lopez-Archilla, A.I.1    Marin, I.2    Amils, R.3
  • 23
    • 0017799179 scopus 로고
    • Nitrogen fixation by Thiobacillus ferrooxidans
    • Mackintosh, M.E. (1978) Nitrogen fixation by Thiobacillus ferrooxidans. J Gen Microbiol 105: 215-218.
    • (1978) J Gen Microbiol , vol.105 , pp. 215-218
    • Mackintosh, M.E.1
  • 24
    • 27744574991 scopus 로고    scopus 로고
    • Role of trehalose synthesis pathways in salt tolerance mechanism of Rhodobacter sphaeroides f. sp. denitrificans IL106
    • Makihara, F., Tsuzuki, M., Sato, K., Masuda, S., Nagashima, K.V., Abo, M., and Okubo, A. (2005) Role of trehalose synthesis pathways in salt tolerance mechanism of Rhodobacter sphaeroides f. sp. denitrificans IL106. Arch Microbiol 184: 56-65.
    • (2005) Arch Microbiol , vol.184 , pp. 56-65
    • Makihara, F.1    Tsuzuki, M.2    Sato, K.3    Masuda, S.4    Nagashima, K.V.5    Abo, M.6    Okubo, A.7
  • 27
    • 33745134371 scopus 로고    scopus 로고
    • Amplification of low quantity bacterial RNA for microarray studies: Time-course analysis of Leptospirillum ferrooxidans under nitrogen-fixing conditions
    • Moreno-Paz, M., and Parro, V. (2006) Amplification of low quantity bacterial RNA for microarray studies: time-course analysis of Leptospirillum ferrooxidans under nitrogen-fixing conditions. Environ Microbiol 8: 1064-1073.
    • (2006) Environ Microbiol , vol.8 , pp. 1064-1073
    • Moreno-Paz, M.1    Parro, V.2
  • 28
    • 0016265459 scopus 로고
    • Glycine metabolism by rat liver mitochondria: Reconstitution of the reversible glycine cleavage system with partially purified protein components
    • Motokawa, Y., and Kikuchi, G. (1974) Glycine metabolism by rat liver mitochondria: reconstitution of the reversible glycine cleavage system with partially purified protein components. Arch Biochem Biophys 164: 624-633.
    • (1974) Arch Biochem Biophys , vol.164 , pp. 624-633
    • Motokawa, Y.1    Kikuchi, G.2
  • 29
    • 0000981474 scopus 로고
    • Solvent extraction and spectrophotometric determination of iron(II) with di-2-pyridyl ketone benzoylhydrazone
    • Nakanishi, T., and Otomo, M. (1986) Solvent extraction and spectrophotometric determination of iron(II) with di-2-pyridyl ketone benzoylhydrazone. Microchem J 33: 172-178.
    • (1986) Microchem J , vol.33 , pp. 172-178
    • Nakanishi, T.1    Otomo, M.2
  • 30
    • 0028791103 scopus 로고
    • The potential for diazotrophy in iron- and sulfur-oxidizing acidophilic bacteria
    • Norris, P.R., Murrell, J.C., and Hinson, D. (1995) The potential for diazotrophy in iron- and sulfur-oxidizing acidophilic bacteria. Arch Microbiol 164: 294-300.
    • (1995) Arch Microbiol , vol.164 , pp. 294-300
    • Norris, P.R.1    Murrell, J.C.2    Hinson, D.3
  • 31
    • 0033874090 scopus 로고    scopus 로고
    • Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: OxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpF
    • Ochsner, U.A., Vasil, M.L., Alsabbagh, E., Parvatiyar, K., and Hassett, D.J. (2000) Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: OxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpF. J Bacteriol 82: 4533-4544.
    • (2000) J Bacteriol , vol.82 , pp. 4533-4544
    • Ochsner, U.A.1    Vasil, M.L.2    Alsabbagh, E.3    Parvatiyar, K.4    Hassett, D.J.5
  • 33
    • 0038610637 scopus 로고    scopus 로고
    • Gene function analysis in environmental isolates: The nif regulon of the strict iron oxidizing bacterium Leptospirillum ferrooxidans
    • Parro, V., and Moreno-Paz, M. (2003) Gene function analysis in environmental isolates: the nif regulon of the strict iron oxidizing bacterium Leptospirillum ferrooxidans. Proc Natl Acad Sci USA 100: 7883-7888.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 7883-7888
    • Parro, V.1    Moreno-Paz, M.2
  • 34
    • 6344285446 scopus 로고    scopus 로고
    • Nitrogen fixation in acidophile iron-oxidizing bacteria: The nif regulon of Leptospirillum ferrooxidans
    • Parro, V., and Moreno-Paz, M. (2004) Nitrogen fixation in acidophile iron-oxidizing bacteria: the nif regulon of Leptospirillum ferrooxidans. Res Microbiol 155: 703-709.
    • (2004) Res Microbiol , vol.155 , pp. 703-709
    • Parro, V.1    Moreno-Paz, M.2
  • 35
    • 20244379571 scopus 로고    scopus 로고
    • Instrument development to search for biomarkers on Mars: Terrestrial acidophile, iron-powered chemolithoautotrophic communities as model systems
    • Parro, V., Rodríguez-Manfredi, J.A., Briones, C., Compostizo, C., Herrero, P.L., Vez, E., et al. (2005) Instrument development to search for biomarkers on Mars: terrestrial acidophile, iron-powered chemolithoautotrophic communities as model systems. Planet Space Sci 53: 729-737.
    • (2005) Planet Space Sci , vol.53 , pp. 729-737
    • Parro, V.1    Rodríguez-Manfredi, J.A.2    Briones, C.3    Compostizo, C.4    Herrero, P.L.5    Vez, E.6
  • 36
    • 0028048861 scopus 로고
    • Oxygen reactions with bacterial oxidases and globins: Binding, reduction and regulation
    • Poole, R.K. (1994) Oxygen reactions with bacterial oxidases and globins: binding, reduction and regulation. Antonie Van Leeuwenhoek 65: 289-310.
    • (1994) Antonie Van Leeuwenhoek , vol.65 , pp. 289-310
    • Poole, R.K.1
  • 37
    • 0042065285 scopus 로고    scopus 로고
    • Touch and go: Tying TonB to transport
    • Postle, K., and Kadner, R.J. (2003) Touch and go: tying TonB to transport. Mol Microbiol 49: 869-882.
    • (2003) Mol Microbiol , vol.49 , pp. 869-882
    • Postle, K.1    Kadner, R.J.2
  • 41
    • 26844536951 scopus 로고    scopus 로고
    • Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates
    • Rawlings, D.E. (2005) Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates. Microb Cell Fact 4: 13.
    • (2005) Microb Cell Fact , vol.4 , pp. 13
    • Rawlings, D.E.1
  • 42
    • 29144439151 scopus 로고    scopus 로고
    • Characterization of the ectoine biosynthesis genes of haloalkalotolerant obligate methanotroph 'Methylomicrobium alcaliphilum 20Z'
    • Reshetnikov, A.S., Khmelenina, V.N., and Trotsenko, Y.A. (2006) Characterization of the ectoine biosynthesis genes of haloalkalotolerant obligate methanotroph 'Methylomicrobium alcaliphilum 20Z'. Arch Microbiol 184: 286-297.
    • (2006) Arch Microbiol , vol.184 , pp. 286-297
    • Reshetnikov, A.S.1    Khmelenina, V.N.2    Trotsenko, Y.A.3
  • 43
    • 0031004715 scopus 로고    scopus 로고
    • Chaperone properties of the bacterial periplasmic substrate-binding proteins
    • Richarme, G., and Caldas, T.D. (1997) Chaperone properties of the bacterial periplasmic substrate-binding proteins. J Biol Chem 272: 15607-15612.
    • (1997) J Biol Chem , vol.272 , pp. 15607-15612
    • Richarme, G.1    Caldas, T.D.2
  • 44
    • 33646498780 scopus 로고    scopus 로고
    • Organic compatible solutes of halotolerant and halophilic microorganisms
    • Roberts, M.F. (2005) Organic compatible solutes of halotolerant and halophilic microorganisms. Saline Syst 1: 1-30.
    • (2005) Saline Syst , vol.1 , pp. 1-30
    • Roberts, M.F.1
  • 45
    • 1642480180 scopus 로고    scopus 로고
    • Bioleaching review part A: Progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation
    • Rohwerder, T., Gehrke, T., Kinzler, K., and Sand, W. (2003) Bioleaching review part A: progress in bioleaching: fundamentals and mechanisms of bacterial metal sulfide oxidation. Appl Microbiol Biotechnol 63: 239-248.
    • (2003) Appl Microbiol Biotechnol , vol.63 , pp. 239-248
    • Rohwerder, T.1    Gehrke, T.2    Kinzler, K.3    Sand, W.4
  • 46
    • 25844456936 scopus 로고    scopus 로고
    • Proteolytic activity of HtpX, a membrane-bound and stress-controlled protease from Escherichia coli
    • Sakoh, M., Ito, K., and Akiyama, Y. (2005) Proteolytic activity of HtpX, a membrane-bound and stress-controlled protease from Escherichia coli. J Biol Chem 280: 33305-33310.
    • (2005) J Biol Chem , vol.280 , pp. 33305-33310
    • Sakoh, M.1    Ito, K.2    Akiyama, Y.3
  • 48
    • 32044462938 scopus 로고    scopus 로고
    • Extracellular polymeric substances mediate bioleaching/biocorrosion via interfacial processes involving iron(III) ions and acidophilic bacteria
    • Sand, W., and Gehrke, T. (2006) Extracellular polymeric substances mediate bioleaching/biocorrosion via interfacial processes involving iron(III) ions and acidophilic bacteria. Res Microbiol 157: 49-56.
    • (2006) Res Microbiol , vol.157 , pp. 49-56
    • Sand, W.1    Gehrke, T.2
  • 49
    • 3843069972 scopus 로고    scopus 로고
    • Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation
    • Tischler, A.D., and Camilli, A. (2004) Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation. Mol Microbiol 53: 857-869.
    • (2004) Mol Microbiol , vol.53 , pp. 857-869
    • Tischler, A.D.1    Camilli, A.2
  • 50
    • 0032564477 scopus 로고    scopus 로고
    • The β subunit sliding DNA clamp is responsible for unassisted mutagenic translesion replication by DNA polymerase III holoenzyme
    • Tomer, G., Reuven, N.B., and Livneh, Z. (1998) The β subunit sliding DNA clamp is responsible for unassisted mutagenic translesion replication by DNA polymerase III holoenzyme. Proc Natl Acad Sci USA 95: 14106-14111.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14106-14111
    • Tomer, G.1    Reuven, N.B.2    Livneh, Z.3
  • 51
    • 4344706540 scopus 로고    scopus 로고
    • IS911 partial transposition products and their processing by the Escherichia coli RecG helicase
    • Turlan, C., Loot, C., and Chandler, M. (2004) IS911 partial transposition products and their processing by the Escherichia coli RecG helicase. Mol Microbiol 53: 1021-1033.
    • (2004) Mol Microbiol , vol.53 , pp. 1021-1033
    • Turlan, C.1    Loot, C.2    Chandler, M.3
  • 52
    • 0037772204 scopus 로고    scopus 로고
    • Microarrays for bacterial detection and microbial community analysis
    • Zhou, J. (2003) Microarrays for bacterial detection and microbial community analysis. Curr Opin Microbiol 6: 288-294.
    • (2003) Curr Opin Microbiol , vol.6 , pp. 288-294
    • Zhou, J.1


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