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Volumn 8, Issue 3, 2012, Pages 433-443

A high-throughput metabolomics method to predict high concentration cytotoxicity of drugs from low concentration profiles

Author keywords

Drug enzyme interaction; Machine learning; Metabolomics; Method; Off target drug effects; Yeast metabolism

Indexed keywords

6 AMINONICOTINAMIDE; BENOMYL; BUMETANIDE; CAMPTOTHECIN; CHLOROTHIAZIDE; CHLORPROPAMIDE; CIGLITAZONE; CYTARABINE; DACTINOMYCIN; DEOXYGLUCOSE; FENOFIBRATE; FENPROPIMORPH; FLUOROURACIL; FUROSEMIDE; GEMFIBROZIL; INDAPAMIDE; MALONIC ACID; METFORMIN; MEVINOLIN; NIFEDIPINE; NIMODIPINE; OXYTHIAMINE; REPAGLINIDE; SULFOMETURON METHYL; SURAMIN; TAMOXIFEN; TETRAHYDROLIPSTATIN; TOLBUTAMIDE; TROGLITAZONE; UNINDEXED DRUG;

EID: 84861222535     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-011-0386-0     Document Type: Article
Times cited : (11)

References (37)
  • 2
    • 25444467580 scopus 로고    scopus 로고
    • Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast
    • Blank, L. M., Kuepfer, L., & Sauer, U. (2005). Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast. Genome Biology, 6(6), R49.
    • (2005) Genome Biology , vol.6 , Issue.6 , pp. 49
    • Blank, L.M.1    Kuepfer, L.2    Sauer, U.3
  • 4
    • 64649089947 scopus 로고    scopus 로고
    • Cross-Platform Comparison of Methods for Quantitative Metabolomics of Primary Metabolism
    • Buscher, J. M., Czernik, D., Ewald, J. C., Sauer, U., & Zamboni, N. (2009). Cross-platform comparison of methods for quantitative metabolomics of primary metabolism. Analytical Chemistry, 81(6), 2135-2143.
    • (2009) Analytical Chemistry , vol.81 , Issue.6 , pp. 2135-2143
    • Buscher, J.M.1    Czernik, D.2    Ewald, J.C.3    Sauer, U.4    Zamboni, N.5
  • 5
    • 38949209075 scopus 로고    scopus 로고
    • NMR-based metabolic profiling and metabonomic approaches to problems in molecular toxicology
    • Coen, M., Holmes, E., Lindon, J. C., & Nicholson, J. K. (2008). NMR-based metabolic profiling and metabonomic approaches to problems in molecular toxicology. Chemical Research in Toxicology, 21(1), 9-27.
    • (2008) Chemical Research in Toxicology , vol.21 , Issue.1 , pp. 9-27
    • Coen, M.1    Holmes, E.2    Lindon, J.C.3    Nicholson, J.K.4
  • 6
    • 85052722223 scopus 로고    scopus 로고
    • Committee on Toxicity Testing and Assessment of Environmental Agents, N. R. C Washington, DC: The National Academies Press
    • Committee on Toxicity Testing and Assessment of Environmental Agents, N. R. C. (2007). Toxicity Testing in the 21st Century: A vision and a strategy. Washington, DC: The National Academies Press.
    • (2007) Toxicity Testing in the 21st Century: A vision and a strategy
  • 8
    • 77951125481 scopus 로고    scopus 로고
    • Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity
    • Fendt, S. M., Buescher, J. M., Rudroff, F., Picotti, P., Zamboni, N., & Sauer, U. (2010a). Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity. Molecular Systems Biology, 6, 356.
    • (2010) Molecular Systems Biology , vol.6 , pp. 356
    • Fendt, S.M.1    Buescher, J.M.2    Rudroff, F.3    Picotti, P.4    Zamboni, N.5    Sauer, U.6
  • 9
    • 78649832864 scopus 로고    scopus 로고
    • Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast
    • Fendt, S. M., Oliveira, A. P., Christen, S., Picotti, P., Dechant, R. C., & Sauer, U. (2010b). Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast. Molecular Systems Biology, 6, 432.
    • (2010) Molecular Systems Biology , vol.6 , pp. 432
    • Fendt, S.M.1    Oliveira, A.P.2    Christen, S.3    Picotti, P.4    Dechant, R.C.5    Sauer, U.6
  • 10
    • 67650070045 scopus 로고    scopus 로고
    • Multi-parameter phenotypic profiling: Using cellular effects to characterize small-molecule compounds
    • Feng, Y., Mitchison, T. J., Bender, A., Young, D. W., & Tallarico, J. A. (2009). Multi-parameter phenotypic profiling: Using cellular effects to characterize small-molecule compounds. Nature Reviews Drug Discovery, 8(7), 567-578.
    • (2009) Nature Reviews Drug Discovery , vol.8 , Issue.7 , pp. 567-578
    • Feng, Y.1    Mitchison, T.J.2    Bender, A.3    Young, D.W.4    Tallarico, J.A.5
  • 11
    • 0037335931 scopus 로고    scopus 로고
    • Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS
    • Fischer, E., & Sauer, U. (2003). Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. European Journal of Biochemistry, 270(5), 880-891.
    • (2003) European Journal of Biochemistry , vol.270 , Issue.5 , pp. 880-891
    • Fischer, E.1    Sauer, U.2
  • 12
    • 20044375201 scopus 로고    scopus 로고
    • Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
    • Fischer, E., & Sauer, U. (2005). Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nature Genetics, 37(6), 636-640.
    • (2005) Nature Genetics , vol.37 , Issue.6 , pp. 636-640
    • Fischer, E.1    Sauer, U.2
  • 14
    • 0041864127 scopus 로고    scopus 로고
    • In vivo measurement of fluxes through metabolic pathways: The missing link in functional genomics and pharmaceutical research
    • Hellerstein, M. K. (2003). In vivo measurement of fluxes through metabolic pathways: The missing link in functional genomics and pharmaceutical research. Annual Review of Nutrition, 23, 379-402.
    • (2003) Annual Review of Nutrition , vol.23 , pp. 379-402
    • Hellerstein, M.K.1
  • 15
    • 42349100173 scopus 로고    scopus 로고
    • The chemical genomic portrait of yeast: Uncovering a phenotype for all genes
    • Hillenmeyer, M. E., Fung, E., Wildenhain, J., Pierce, S. E., Hoon, S., Lee, W., et al. (2008). The chemical genomic portrait of yeast: Uncovering a phenotype for all genes. Science, 320(5874), 362-365.
    • (2008) Science , vol.320 , Issue.5874 , pp. 362-365
    • Hillenmeyer, M.E.1    Fung, E.2    Wildenhain, J.3    Pierce, S.E.4    Hoon, S.5    Lee, W.6
  • 16
    • 54249155522 scopus 로고    scopus 로고
    • Network pharmacology: The next paradigm in drug discovery
    • Hopkins, A. L. (2008). Network pharmacology: The next paradigm in drug discovery. Nature Chemical Biology, 4(11), 682-690.
    • (2008) Nature Chemical Biology , vol.4 , Issue.11 , pp. 682-690
    • Hopkins, A.L.1
  • 21
    • 34047179422 scopus 로고    scopus 로고
    • Genetic basis of individual differences in the response to small-molecule drugs in yeast
    • Perlstein, E. O., Ruderfer, D. M., Roberts, D. C., Schreiber, S. L., & Kruglyak, L. (2007). Genetic basis of individual differences in the response to small-molecule drugs in yeast. Nature Genetics, 39(4), 496-502.
    • (2007) Nature Genetics , vol.39 , Issue.4 , pp. 496-502
    • Perlstein, E.O.1    Ruderfer, D.M.2    Roberts, D.C.3    Schreiber, S.L.4    Kruglyak, L.5
  • 22
    • 12844271254 scopus 로고    scopus 로고
    • The emerging therapeutic potential of sirtuin-interacting drugs: From cell death to lifespan extension
    • Porcu, M., & Chiarugi, A. (2005). The emerging therapeutic potential of sirtuin-interacting drugs: From cell death to lifespan extension. Trends in Pharmacological Sciences, 26(2), 94-103.
    • (2005) Trends in Pharmacological Sciences , vol.26 , Issue.2 , pp. 94-103
    • Porcu, M.1    Chiarugi, A.2
  • 23
    • 33846024055 scopus 로고    scopus 로고
    • Caffeine targets TOR complex I and provides evidence for a regulatory link between the FRB and kinase domains of Tor1p
    • Reinke, A., Chen, J. C., Aronova, S., & Powers, T. (2006). Caffeine targets TOR complex I and provides evidence for a regulatory link between the FRB and kinase domains of Tor1p. Journal of Biological Chemistry, 281(42), 31616-31626.
    • (2006) Journal of Biological Chemistry , vol.281 , Issue.42 , pp. 31616-31626
    • Reinke, A.1    Chen, J.C.2    Aronova, S.3    Powers, T.4
  • 24
    • 1242306261 scopus 로고    scopus 로고
    • High-throughput phenomics: Experimental methods for mapping fluxomes
    • Sauer, U. (2004). High-throughput phenomics: Experimental methods for mapping fluxomes. Current Opinion in Biotechnology, 15(1), 58-63.
    • (2004) Current Opinion in Biotechnology , vol.15 , Issue.1 , pp. 58-63
    • Sauer, U.1
  • 25
    • 33846061120 scopus 로고    scopus 로고
    • Metabolic networks in motion: 13C-based flux analysis
    • Sauer, U. (2006). Metabolic networks in motion: 13C-based flux analysis. Molecular Systems Biology, 2, 62.
    • (2006) Molecular Systems Biology , vol.2 , pp. 62
    • Sauer, U.1
  • 26
    • 33847635635 scopus 로고    scopus 로고
    • Structural basis of inhibition of the human NAD+-dependent deacetylase SIRT5 by suramin
    • Schuetz, A., Min, J., Antoshenko, T., Wang, C. L., Allali-Hassani, A., Dong, A., et al. (2007). Structural basis of inhibition of the human NAD+-dependent deacetylase SIRT5 by suramin. Structure, 15(3), 377-389.
    • (2007) Structure , vol.15 , Issue.3 , pp. 377-389
    • Schuetz, A.1    Min, J.2    Antoshenko, T.3    Wang, C.L.4    Allali-Hassani, A.5    Dong, A.6
  • 27
    • 0037394596 scopus 로고    scopus 로고
    • Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose
    • Sonderegger, M., & Sauer, U. (2003). Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose. Applied and Environmental Microbiology, 69(4), 1990-1998.
    • (2003) Applied and Environmental Microbiology , vol.69 , Issue.4 , pp. 1990-1998
    • Sonderegger, M.1    Sauer, U.2
  • 28
    • 12244260776 scopus 로고    scopus 로고
    • Emerging applications of kinetic biomarkers in preclinical and clinical drug development
    • Turner, S. M., & Hellerstein, M. K. (2005). Emerging applications of kinetic biomarkers in preclinical and clinical drug development. Current Opinion in Drug Discovery & Development, 8(1), 115-126.
    • (2005) Current Opinion in Drug Discovery & Development , vol.8 , Issue.1 , pp. 115-126
    • Turner, S.M.1    Hellerstein, M.K.2
  • 29
    • 0026710123 scopus 로고
    • Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation of respiration and alcoholic fermentation
    • Verduyn, C., Postma, E., Scheffers, W. A., & van Dijken, J. P. (1992). Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation of respiration and alcoholic fermentation. Yeast, 8(7), 501-517.
    • (1992) Yeast , vol.8 , Issue.7 , pp. 501-517
    • Verduyn, C.1    Postma, E.2    Scheffers, W.A.3    van Dijken, J.P.4
  • 30
    • 70549108001 scopus 로고    scopus 로고
    • Connecting synthetic chemistry decisions to cell and genome biology using small-molecule phenotypic profiling
    • Wagner, B. K., & Clemons, P. A. (2009). Connecting synthetic chemistry decisions to cell and genome biology using small-molecule phenotypic profiling. Current Opinion in Chemical Biology, 13(5-6), 539-548.
    • (2009) Current Opinion in Chemical Biology , vol.13 , Issue.5-6 , pp. 539-548
    • Wagner, B.K.1    Clemons, P.A.2
  • 32
    • 0024997351 scopus 로고
    • Trehalose in yeast, stress protectant rather than reserve carbohydrate
    • Wiemken, A. (1990). Trehalose in yeast, stress protectant rather than reserve carbohydrate. Antonie van Leeuwenhoek, 58(3), 209-217.
    • (1990) Antonie Van Leeuwenhoek , vol.58 , Issue.3 , pp. 209-217
    • Wiemken, A.1
  • 33
    • 37249026328 scopus 로고    scopus 로고
    • Integrating high-content screening and ligand-target prediction to identify mechanism of action
    • Young, D. W., Bender, A., Hoyt, J., McWhinnie, E., Chirn, G. W., Tao, C. Y., et al. (2008). Integrating high-content screening and ligand-target prediction to identify mechanism of action. Nature Chemical Biology, 4(1), 59-68.
    • (2008) Nature Chemical Biology , vol.4 , Issue.1 , pp. 59-68
    • Young, D.W.1    Bender, A.2    Hoyt, J.3    McWhinnie, E.4    Chirn, G.W.5    Tao, C.Y.6
  • 35
    • 25444489844 scopus 로고    scopus 로고
    • FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments
    • Zamboni, N., Fischer, E., & Sauer, U. (2005). FiatFlux-a software for metabolic flux analysis from 13C-glucose experiments. BMC Bioinformatics, 6, 209.
    • (2005) BMC Bioinformatics , vol.6 , pp. 209
    • Zamboni, N.1    Fischer, E.2    Sauer, U.3
  • 36
    • 12244308282 scopus 로고    scopus 로고
    • Model-independent fluxome profiling from 2H and 13C experiments for metabolic variant discrimination
    • Zamboni, N., & Sauer, U. (2004). Model-independent fluxome profiling from 2H and 13C experiments for metabolic variant discrimination. Genome Biology, 5(12), R99.
    • (2004) Genome Biology , vol.5 , Issue.12
    • Zamboni, N.1    Sauer, U.2
  • 37
    • 70349745413 scopus 로고    scopus 로고
    • Novel biological insights through metabolomics and 13C-flux analysis
    • Zamboni, N., & Sauer, U. (2009). Novel biological insights through metabolomics and 13C-flux analysis. Current Opinion in Microbiology, 12(5), 553-558.
    • (2009) Current Opinion in Microbiology , vol.12 , Issue.5 , pp. 553-558
    • Zamboni, N.1    Sauer, U.2


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