-
1
-
-
12844277300
-
The 1.8-A crystal structure of human tear lipocalin reveals an extended branched cavity with capacity for multiple ligands
-
Breustedt,D.A. et al. (2005) The 1.8-A crystal structure of human tear lipocalin reveals an extended branched cavity with capacity for multiple ligands. J. Biol. Chem., 280, 484-493.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 484-493
-
-
Breustedt, D.A.1
-
2
-
-
0001244377
-
Origin of the right-handed twist of beta-sheets of poly(LVal) chains
-
Chou,K.C. and Scheraga,H.A. (1982) Origin of the right-handed twist of beta-sheets of poly(LVal) chains. Proc. Natl Acad. Sci. USA, 79, 7047-7051.
-
(1982)
Proc. Natl Acad. Sci. USA
, vol.79
, pp. 7047-7051
-
-
Chou, K.C.1
Scheraga, H.A.2
-
3
-
-
43749107283
-
Comparative protein structure modeling using Modeller
-
Chapter 5, Units 5-6
-
Eswar,N. et al. (2006) Comparative protein structure modeling using Modeller. Curr. Protoc. Bioinformatics, Chapter 5, Units 5-6.
-
(2006)
Curr. Protoc. Bioinformatics
-
-
Eswar, N.1
-
4
-
-
80052080449
-
The structural biology of β-barrel membrane proteins: a summary of recent reports
-
Fairman,J.W. et al. (2011) The structural biology of β-barrel membrane proteins: a summary of recent reports. Curr. Opin. Struct. Biol., 21, 523-531.
-
(2011)
Curr. Opin. Struct. Biol.
, vol.21
, pp. 523-531
-
-
Fairman, J.W.1
-
5
-
-
84857650341
-
Membrane assembly of the cholesterol-dependent cytolysin pore complex
-
Hotze,E.M. and Tweten,R.K. (2012) Membrane assembly of the cholesterol-dependent cytolysin pore complex. Biochim. Biophys. Acta., 1818, 1028-1038.
-
(2012)
Biochim. Biophys. Acta.
, vol.1818
, pp. 1028-1038
-
-
Hotze, E.M.1
Tweten, R.K.2
-
6
-
-
0035109170
-
MPtopo: a database of membrane protein topology
-
Jayasinghe,S. et al. (2001) MPtopo: a database of membrane protein topology. Protein Sci., 10, 455-458.
-
(2001)
Protein Sci.
, vol.10
, pp. 455-458
-
-
Jayasinghe, S.1
-
7
-
-
78649367700
-
The structure and function of mammalian membrane-attack complex/perforin-like proteins
-
Kondos,S.C. et al. (2010) The structure and function of mammalian membrane-attack complex/perforin-like proteins. Tissue Antigens, 76, 341-351.
-
(2010)
Tissue Antigens
, vol.76
, pp. 341-351
-
-
Kondos, S.C.1
-
8
-
-
0034702177
-
Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export
-
Koronakis,V. et al. (2000) Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export. Nature, 405, 914-919.
-
(2000)
Nature
, vol.405
, pp. 914-919
-
-
Koronakis, V.1
-
9
-
-
0024529940
-
Structural principles of alpha/beta barrel proteins: the packing of the interior of the sheet
-
Lesk,A.M. et al. (1989) Structural principles of alpha/beta barrel proteins: the packing of the interior of the sheet. Proteins, 5, 139-148.
-
(1989)
Proteins
, vol.5
, pp. 139-148
-
-
Lesk, A.M.1
-
10
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell,A.D. et al. (1998) All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B, 102, 3586-3616.
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 3586-3616
-
-
MacKerell, A.D.1
-
11
-
-
3142714765
-
Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
-
Mackerell,A.D.,Jr. et al. (2004) Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J. Comput. Chem., 25, 1400-1415.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
Mackerell Jr., A.D.1
-
12
-
-
0018714472
-
Gene duplication in the evolution of the yeast hexokinase active site
-
McLachlan,A.D. (1979) Gene duplication in the evolution of the yeast hexokinase active site. Eur. J. Biochem., 100, 181-187.
-
(1979)
Eur. J. Biochem.
, vol.100
, pp. 181-187
-
-
McLachlan, A.D.1
-
13
-
-
0028348081
-
Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis
-
Murzin,A.G. et al. (1994a) Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis. J. Mol. Biol., 236, 1369-1381.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 1369-1381
-
-
Murzin, A.G.1
-
14
-
-
0028330220
-
Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures
-
Murzin,A.G. et al. (1994b) Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures. J. Mol. Biol., 236, 1382-1400.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 1382-1400
-
-
Murzin, A.G.1
-
15
-
-
0032835301
-
Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels
-
Nagano,N. et al. (1999) Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels. Protein Sci., 8, 2072-2084.
-
(1999)
Protein Sci.
, vol.8
, pp. 2072-2084
-
-
Nagano, N.1
-
16
-
-
4444282928
-
A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6
-
Oostenbrink,C. et al. (2004) A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6. J. Comput. Chem., 25, 1656-1676.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
-
17
-
-
0035016123
-
Tilt, twist and coiling in beta-barrel membrane proteins: relation to infrared dichroism
-
Pali,T. and Marsh,D. (2001) Tilt, twist and coiling in beta-barrel membrane proteins: relation to infrared dichroism. Biophys. J., 80, 2789-2797.
-
(2001)
Biophys. J.
, vol.80
, pp. 2789-2797
-
-
Pali, T.1
Marsh, D.2
-
18
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
Phillips,J.C. et al. (2005) Scalable molecular dynamics with NAMD. J. Comput. Chem., 26, 1781-1802.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1781-1802
-
-
Phillips, J.C.1
-
19
-
-
3543016107
-
Membrane-dependent conformational changes initiate cholesterol-dependent cytolysin oligomerization and intersubunit beta-strand alignment
-
Ramachandran,R. et al. (2004) Membrane-dependent conformational changes initiate cholesterol-dependent cytolysin oligomerization and intersubunit beta-strand alignment. Nat. Struct. Mol. Biol., 11, 697-705.
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 697-705
-
-
Ramachandran, R.1
-
20
-
-
48749111836
-
The MACPF/CDC family of pore-forming toxins
-
Rosado,C.J. et al. (2008) The MACPF/CDC family of pore-forming toxins. Cell.Microbiol., 10, 1765-1774.
-
(2008)
Cell. Microbiol.
, vol.10
, pp. 1765-1774
-
-
Rosado, C.J.1
-
21
-
-
0030666371
-
Structure of a cholesterol-binding, thiol-activated cytolysin and a model of its membrane form
-
Rossjohn,J. et al. (1997) Structure of a cholesterol-binding, thiol-activated cytolysin and a model of its membrane form. Cell, 89, 685-692.
-
(1997)
Cell
, vol.89
, pp. 685-692
-
-
Rossjohn, J.1
-
22
-
-
0029124070
-
Transbilayer pores formed by beta-barrels: molecular modeling of pore structures and properties
-
Sansom,M.S. and Kerr,I.D. (1995) Transbilayer pores formed by beta-barrels: molecular modeling of pore structures and properties. Biophys. J., 69, 1334-1343.
-
(1995)
Biophys. J.
, vol.69
, pp. 1334-1343
-
-
Sansom, M.S.1
Kerr, I.D.2
-
23
-
-
0037064291
-
The structure of bacterial outer membrane proteins
-
Schulz,G.E. (2002) The structure of bacterial outer membrane proteins. Biochim. Biophys. Acta., 1565, 308-317.
-
(2002)
Biochim. Biophys. Acta.
, vol.1565
, pp. 308-317
-
-
Schulz, G.E.1
-
24
-
-
0033615736
-
The mechanism of membrane insertion for a cholesteroldependent cytolysin: a novel paradigm for pore-forming toxins
-
Shatursky,O. et al. (1999) The mechanism of membrane insertion for a cholesteroldependent cytolysin: a novel paradigm for pore-forming toxins. Cell, 99, 293-299.
-
(1999)
Cell
, vol.99
, pp. 293-299
-
-
Shatursky, O.1
-
25
-
-
0032514655
-
Identification of a membrane-spanning domain of the thiol-activated pore-forming toxin Clostridium perfringens perfringolysin O: an alpha-helical to beta-sheet transition identified by fluorescence spectroscopy
-
Shepard,L.A. et al. (1998) Identification of a membrane-spanning domain of the thiol-activated pore-forming toxin Clostridium perfringens perfringolysin O: an alpha-helical to beta-sheet transition identified by fluorescence spectroscopy. Biochemistry, 37, 14563-14574.
-
(1998)
Biochemistry
, vol.37
, pp. 14563-14574
-
-
Shepard, L.A.1
-
26
-
-
0030447720
-
Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore
-
Song,L. et al. (1996) Structure of staphylococcal α-hemolysin, a heptameric transmembrane pore. Science, 274, 1859-1865.
-
(1996)
Science
, vol.274
, pp. 1859-1865
-
-
Song, L.1
-
27
-
-
80755176366
-
Parallel generalized born implicit solvent calculations with NAMD
-
Tanner,D.E. et al. (2011) Parallel generalized born implicit solvent calculations with NAMD. J. Chem. Theory Comput., 7, 3635-3642.
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 3635-3642
-
-
Tanner, D.E.1
-
28
-
-
17444405610
-
Structural basis of pore formation by the bacterial toxin pneumolysin
-
Tilley,S.J. et al. (2005) Structural basis of pore formation by the bacterial toxin pneumolysin. Cell, 121, 247-256.
-
(2005)
Cell
, vol.121
, pp. 247-256
-
-
Tilley, S.J.1
-
29
-
-
0035903650
-
Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site
-
Vandeputte-Rutten,L. et al. (2001) Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site. EMBO J., 20, 5033-5039.
-
(2001)
EMBO J.
, vol.20
, pp. 5033-5039
-
-
Vandeputte-Rutten, L.1
-
30
-
-
84860265076
-
PDBe: protein data bank in Europe
-
Velankar,S. et al. (2012) PDBe: protein data bank in Europe. Nucleic Acids Res., 40, D445-452.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Velankar, S.1
-
31
-
-
0026737314
-
Structure of porin refined at 1.8 Aresolution
-
Weiss,M.S. and Schulz,G.E. (1992) Structure of porin refined at 1.8 Aresolution. J. Mol. Biol., 227, 493-509.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 493-509
-
-
Weiss, M.S.1
Schulz, G.E.2
-
32
-
-
0029780351
-
The molecular structure of green fluorescent protein
-
Yang,F. et al. (1996) The molecular structure of green fluorescent protein. Nat. Biotechnol., 14, 1246-1251.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1246-1251
-
-
Yang, F.1
|