RNA-Seq mapping and detection of gene fusions with a suffix array algorithm

PLoS Computational Biology

Volumn 8, Issue 4, 2012, Pages

  Sakarya, Onur ^a   Breu, Heinz ^a   Radovich, Milan ^b   Chen, Yongzhi ^a   Wang, Yulei N ^a   Barbacioru, Catalin ^a   Utiramerur, Sowmi ^a   Whitley, Penn P ^c   Brockman, Joel P ^c   Vatta, Paolo ^a   Zhang, Zheng ^a   Popescu, Liviu ^a   Muller, Matthew W ^a   Kudlingar, Vidya ^a   Garg, Nriti ^a   Li, Chieh Yuan ^a   Kong, Benjamin S ^a   Bodeau, John P ^a   Nutter, Robert C ^a   Gu, Jian ^c   Bramlett, Kelli S ^c   Ichikawa, Jeffrey K ^a   Hyland, Fiona C ^a   Siddiqui, Asim S ^a   more..

^a Life Technologies Corporation   (United States)

^b INDIANA UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c APPLIED BIOSYSTEMS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; GENES; INDEXING (OF INFORMATION); MAPPING; PIPELINES; TUMORS;

ACCURATE MAPPING; ALIGNERS; ARRAY ALGORITHMS; BREAST CANCER CELLS; CANCER CELL LINES; EXON-EXON JUNCTION; GENE FUSION; HIGH-THROUGHPUT; QUALITY VALUE; SUFFIX ARRAYS;

RNA;

ESTROGEN RECEPTOR ALPHA; RIBOSOMAL PROTEIN S6 KINASE BETA 1; S6 KINASE; UNCLASSIFIED DRUG;

AGED; ARTICLE; BASE PAIRING; CANCER CELL CULTURE; CELL STRAIN MCF 7; COMPUTER PROGRAM; CONTROLLED STUDY; DNA STRAND BREAKAGE; ESTROGEN RECEPTOR ALPHA C6ORF97 GENE; FEMALE; GENE; GENE EXPRESSION; GENE FUSION; GENE LIBRARY; GENE MAPPING; GENE SPLICE JUNCTION; GENETIC ALGORITHM; GENETIC PARAMETERS; HUMAN; HUMAN CELL; POLYMERASE CHAIN REACTION; QUALITY CONTROL; RIBOSOMAL PROTEIN S6 KINASE BETA 1 TMEM49 GENE; RNA SEQUENCE; RNA SPLICING; RNA TRANSCRIPTION; SEQUENCE ALIGNMENT; ALGORITHM; DNA MICROARRAY; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS;

ALGORITHMS; BASE SEQUENCE; GENE FUSION; MOLECULAR SEQUENCE DATA; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SEQUENCE ANALYSIS, RNA; SOFTWARE;

EID: 84861141246     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1002464     Document Type: Article

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