-
1
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang,E.T., Sandberg,R., Luo,S., Khrebtukova,I., Zhang,L., Mayr,C., Kingsmore,S.F., Schroth,G.P. and Burge,C.B. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 462, 470-476.
-
(2008)
Nature
, vol.462
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
2
-
-
18344364099
-
Understanding alternative splicing: towards a cellular code
-
Matlin,A.J., Clark,F. and Smith,C.W. (2005) Understanding alternative splicing: towards a cellular code. Nat. Rev. Mol. Cell. Biol., 6, 386-398.
-
(2005)
Nat. Rev. Mol. Cell. Biol.
, vol.6
, pp. 386-398
-
-
Matlin, A.J.1
Clark, F.2
Smith, C.W.3
-
3
-
-
27944431759
-
Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction microarrays
-
Nagao,K., Togawa,N., Fujii,K., Uchikawa,H., Kohno,Y., Yamada,M. and Miyashita,T. (2005) Detecting tissue-specific alternative splicing and disease-associated aberrant splicing of the PTCH gene with exon junction microarrays. Hum. Mol. Genet., 14, 3379-3388.
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 3379-3388
-
-
Nagao, K.1
Togawa, N.2
Fujii, K.3
Uchikawa, H.4
Kohno, Y.5
Yamada, M.6
Miyashita, T.7
-
4
-
-
0242700119
-
Gene structure-based splice variant deconvolution using a microarray platform
-
Wang,H., Hubbell,E., Hu,J.S., Mei,G., Cline,M., Lu,G., Clark,T., Siani-Rose,M.A., Ares,M., Kulp,D.C. et al. (2003) Gene structure-based splice variant deconvolution using a microarray platform. Bioinformatics, 19, 315-322.
-
(2003)
Bioinformatics
, vol.19
, pp. 315-322
-
-
Wang, H.1
Hubbell, E.2
Hu, J.S.3
Mei, G.4
Cline, M.5
Lu, G.6
Clark, T.7
Siani-Rose, M.A.8
Ares, M.9
Kulp, D.C.10
-
5
-
-
0027296959
-
Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library
-
Adams,M.D., Soares,M.B., Kerlavage,A.R., Fields,C. and Venter,J.C. (1993) Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library. Nat. Genet., 4, 373-380.
-
(1993)
Nat. Genet.
, vol.4
, pp. 373-380
-
-
Adams, M.D.1
Soares, M.B.2
Kerlavage, A.R.3
Fields, C.4
Venter, J.C.5
-
6
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni,J.C., Mason,C.E., Mane,S.M., Stephens,M. and Gilad,Y. (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res., 18, 1509-1517.
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
7
-
-
46249130709
-
The beginning of the end for microarrays?
-
Shendure,J. (2008) The beginning of the end for microarrays? Nat. Methods, 5, 585-587.
-
(2008)
Nat. Methods
, vol.5
, pp. 585-587
-
-
Shendure, J.1
-
8
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang,Z., Gerstein,M. and Snyder,M. (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat. Rev. Genet., 10, 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
9
-
-
53749083993
-
SeqMap: mapping massive amount of oligonucleotides to the genome
-
Jiang,H. and Wong,W.H. (2008) SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics, 24, 2395-2396.
-
(2008)
Bioinformatics
, vol.24
, pp. 2395-2396
-
-
Jiang, H.1
Wong, W.H.2
-
10
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi,A., Williams,B.A., McCue,K., Schaeffer,L. and Wold,B. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods, 5, 621-628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
11
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell,C., Pachter,L. and Salzberg,S.L. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
12
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi,U., Wang,Z., Waern,K., Shou,C., Raha,D., Gerstein,M. and Snyder,M. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science, 320, 1344-1349.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
13
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
Wilhelm,B.T., Marguerat,S., Watt,S., Schubert,F., Wood,V., Goodhead,I., Penkett,C.J., Rogers,J. and Bähler,J. (2008) Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature, 453, 1239-1243.
-
(2008)
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bähler, J.9
-
14
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister,R., O'Malley,R.C., Tonti-Filippini,J., Gregory,B.D., Berry,C.C., Millar,A.H. and Ecker,J.R. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133, 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
15
-
-
46249103973
-
Stem cell transcriptome profiling via massive-scale mRNA sequencing
-
Cloonan,N., Forrest,A.R., Kolle,G., Gardiner,B.B., Faulkner,G.J., Brown,M.K., Taylor,D.F., Steptoe,A.L., Wani,S., Bethel,G. et al. (2008) Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods, 5, 613-619.
-
(2008)
Nat. Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.2
Kolle, G.3
Gardiner, B.B.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
-
16
-
-
56749098074
-
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
-
Pan,Q., Shai,O., Lee,L.J., Frey,B.J. and Blencowe,B.J. (2008) Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nat. Genet., 40, 1413-1415.
-
(2008)
Nat. Genet.
, vol.40
, pp. 1413-1415
-
-
Pan, Q.1
Shai, O.2
Lee, L.J.3
Frey, B.J.4
Blencowe, B.J.5
-
17
-
-
47649124124
-
A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome
-
Sultan,M., Schulz,M.H., Richard,H., Magen,A., Klingenhoff,A., Scherf,M., Seifert,M., Borodina,T., Soldatov,A., Parkhomchuk,D. et al. (2008) A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science, 321, 956-960.
-
(2008)
Science
, vol.321
, pp. 956-960
-
-
Sultan, M.1
Schulz, M.H.2
Richard, H.3
Magen, A.4
Klingenhoff, A.5
Scherf, M.6
Seifert, M.7
Borodina, T.8
Soldatov, A.9
Parkhomchuk, D.10
-
18
-
-
0034326362
-
Analysis of canonical and non-canonical splice sites in mammalian genomes
-
Burset,M., Seledtsov,I.A. and Solovyev,V.V. (2000) Analysis of canonical and non-canonical splice sites in mammalian genomes. Nucleic Acids Res., 28, 4364-4375.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4364-4375
-
-
Burset, M.1
Seledtsov, I.A.2
Solovyev, V.V.3
-
19
-
-
13444306641
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt,K.D., Tatusova,T. and Maglott,D.R. (2005) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 33, 501-504.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 501-504
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
20
-
-
2442707676
-
The Ensembl automatic gene annotation system
-
Curwen,V., Eyras,E., Andrews,T.D., Clarke,L., Mongin,E., Searle,S.M. and Clamp,M. (2004) The Ensembl automatic gene annotation system. Genome Res., 14, 942-950.
-
(2004)
Genome Res.
, vol.14
, pp. 942-950
-
-
Curwen, V.1
Eyras, E.2
Andrews, T.D.3
Clarke, L.4
Mongin, E.5
Searle, S.M.6
Clamp, M.7
-
21
-
-
33646133653
-
The UCSC known genes
-
Hsu,F., Kent,W.J., Clawson,H., Kuhn,R.M., Diekhans,M. and Haussler,D. (2006) The UCSC known genes. Bioinformatics, 22, 1036-1046.
-
(2006)
Bioinformatics
, vol.22
, pp. 1036-1046
-
-
Hsu, F.1
Kent, W.J.2
Clawson, H.3
Kuhn, R.M.4
Diekhans, M.5
Haussler, D.6
-
22
-
-
0027249595
-
dbEST-database for "expressed sequence tags"
-
Boguski,M.S., Lowe,T.M. and Tolstoshev,C.M. (1993) dbEST-database for "expressed sequence tags". Nat. Genet., 4, 332-333.
-
(1993)
Nat. Genet.
, vol.4
, pp. 332-333
-
-
Boguski, M.S.1
Lowe, T.M.2
Tolstoshev, C.M.3
|