Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer

Proceedings of the National Academy of Sciences of the United States of America

Volumn 98, Issue 10, 2001, Pages 5711-5716

  Monni, Outi ^a   Bärlund, Maarit ^b   Mousses, Spyro ^a   Kononen, Juha ^a   Sauter, Guido ^c   Heiskanen, Mervi ^a   Paavola, Paulina ^d   Avela, Kristiina ^e,f   Chen, Yidong ^a   Bittner, Michael L ^a   Kallioniemi, Anne ^a  

^a NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF TAMPERE   (Finland)

^c UNIVERSITY OF BASEL   (Switzerland)

^d NATIONAL PUBLIC HEALTH INSTITUTE   (Finland)

^e UNIVERSITY OF HELSINKI   (Finland)

^f FOLKHÄLSAN INSTITUTE OF GENETICS   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BREAST CANCER; CHROMOSOME 17Q; CHROMOSOME MAP; CONTROLLED STUDY; DNA MICROARRAY; EXPRESSED SEQUENCE TAG; GENE AMPLIFICATION; GENE CONSTRUCT; GENE EXPRESSION; GENE FREQUENCY; GENE NUMBER; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; MOLECULAR CLONING; PRIORITY JOURNAL;

BREAST NEOPLASMS; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 17; CLONING, MOLECULAR; DNA, COMPLEMENTARY; GENE EXPRESSION PROFILING; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 14344280240     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.091582298     Document Type: Article

References (38)

1. Ross, J. S. & Fletcher, J. A. (1999) Semin. Cancer Biol. 9, 125-138.
2. Cuny, M., Kramar, A., Courjal, F., Johannsdottir, V., Iacopetta, B., Fontaine, H., Grenier, J., Culine, S. & Theillet, C. (2000) Cancer Res. 60, 1077-1083.
3. Anzick, S. L., Kononen, J., Walker, R. L., Azorsa, D. O., Tanner, M. M., Guan, X. Y., Sauter, G., Kallioniemi, O.-P., Trent, J. M. & Meltzer, P. S. (1997) Science 277, 965-968.
4. Sen, S., Zhou, H. & White, R. A. (1997) Oncogene 14, 2195-2200.
5. Brinkmann, U., Gallo, M., Polymeropoulos, M. H. & Pastan, I. (1996) Genome Res. 6, 187-194.
6. Collins, C., Rommens, J. M., Kowbel, D., Godfrey, T., Tanner, M., Hwang, S. I., Polikoff, D., Nonet, G., Cochran, J., Myambo, K., et al. (1998) Proc. Natl. Acad. Sci. USA 95, 8703-8708.
7. Kallioniemi, A., Kallioniemi, O.-P., Piper, J., Tanner, M., Stokke, T., Chen, L., Smith, H. S., Pinkel, D., Gray, J. W. & Waldman, F. M. (1994) Proc. Natl. Acad. Sci. USA 91, 2156-2160.
8. Moore, E., Magee, H., Coyne, J., Gorey, T. & Dervan, P. A. (1999) J. Pathol. 187, 403-409.
9. Roylance, R., Gorman, P., Harris, W., Liebmann, R., Barnes, D., Hanby, A. & Sheer, D. (1999) Cancer Res. 59, 1433-1436.
10. Tirkkonen, M., Johansson, O., Agnarsson, B. A., Olsson, H., Ingvarsson, S., Karhu, R., Tanner, M., Isola, J., Barkardottir, R. B., Borg, A. & Kallioniemi, O.-P. (1997) Cancer Res. 57, 1222-1227.
11. Bärlund, M., Forozan, F., Kononen, J., Bubendorf, L., Chen, Y., Bittner, M. L., Torhorst, J., Haas, P., Bucher, C., Sauter, G., et al. (2000) J. Natl. Cancer Inst. 92, 1252-1259.
12. Brinkschmidt, C., Christiansen, H., Terpe, H. J., Simon, R., Boecker, W., Lampert, F. & Stoerkel, S. (1997) J. Pathol. 181, 394-400.
13. Vandesompele, J., Van Roy, N., Van Gele, M., Laureys, G., Ambros, P., Heimann, P., Devalck, C., Schuuring, E., Brock, P., Otten, J., et al. (1998) Genes Chromosomes Cancer 23, 141-152.
14. Weber, R. G., Bostrom, J., Wolter, M., Baudis, M., Collins, V. P., Reifenberger, G. & Lichter, P. (1997) Proc. Natl. Acad. Sci. USA 94, 14719-14724.
15. Ried, T., Petersen, I., Holtgreve-Grez, H., Speicher, M. R., Schröck, E., du Manoir, S. & Cremer, T. (1994) Cancer Res. 54, 1801-1806.
16. Schwendel, A., Langreck, H., Reichel, M., Schröck, E., Ried, T., Dietel, M. & Petersen, I. (1997) Int. J. Cancer. 74, 86-93.
17. Richter, J., Jiang, F., Gorog, J. P., Sartorius, G., Egenter, C., Gasser, T. C., Moch, H., Mihatsch, M. J. & Sauter, G. (1997) Cancer Res. 57, 2860-2864.
18. Korn, W. M., Oide Weghuis, D. E., Suijkerbuijk, R. F., Schmidt, U., Otto, T., du Manoir, S., Geurts van Gessel, A., Harstrick, A., Seeber, S. & Becher, R. (1996) Genes Chromosomes Cancer 17, 78-87.
19. Marchio, A., Meddeb, M., Pineau, P., Danglot, G., Tiollais, P., Bernheim, A. & Dejean, A. (1997) Genes Chromosomes Cancer 18, 59-65.
20. Couch, F. J., Wang, X.-Y., Wu, G.-J., Qian, J., Jenkins, R. B. & James, C. D. (1999) Cancer Res. 59, 1408-1411.
21. Bärlund, M., Monni, O., Kononen, J., Cornelison, R., Torhorst, J., Sauter, G., Kallioniemi, O.-P. & Kallioniemi, A. (2000) Cancer Res. 60, 5340-5344.
22. Wu, G. J., Sinclair, C. S., Paape, J., Ingle, J. N., Roche, P. C., James, C. D. & Couch, F. J. (2000) Cancer Res. 60, 5371-5375.
23. Bärlund, M., Nupponen, N. N., Karhu, R., Tanner, M. M., Paavola, P., Kallioniemi, O.-P. & Kallioniemi, A. (1998) Cytogenet. Cell Genet. 82, 189-191.
24. Heiskanen, M., Karhu, R., Hellsten, E., Peltonen, L., Kallioniemi, O.-P. & Palotie, A. (1994) BioTechniques 17, 928-934.
25. Kononen, J., Bubendorf, L., Kallioniemi, A., Bärlund, M., Schraml, P., Leighton, S., Torhorst, J., Mihatsch, M. J., Sauter, G. & Kallioniemi, O.-P. (1998) Nat. Med. 4, 844-847.
26. DeRisi, J., Penland, L., Brown, P. O., Bittner, M. L., Meltzer, P. S., Ray, M., Chen, Y., Su, Y. A. & Trent, J. M. (1996) Nat. Genet. 14, 457-450.
27. Shalon, D., Smith, S. J. & Brown, P. O. (1996) Genome Res. 6, 639-545.
28. Pollack, J. R., Perou, C. M., Alizadeh, A. A., Eisen, M. B., Pergamenschikov, A., Williams, C. F., Jeffrey, S. S., Botstein, D. & Brown, P. O. (1999) Nat. Genet. 23, 41-46.
29. Khan, J., Simon, R., Bittner, M., Chen, Y., Leighton, S. B., Pohida, T., Smith, P. D., Jiang, Y., Gooden, G. C., Trent, J. M. & Meltzer, P. S. (1998) Cancer Res. 58, 5009-5013.
30. Mousses, S., Bittner, M. L., Chen, Y., Dougherty, E. R., Baxevanis, A., Meltzer, P. S. & Trent, J. M. (2000) in Functional Genomics, eds. Livesey, F. J. & Hunt, S. P. (Oxford Univ. Press, Oxford), pp. 113-137.
31. Chen, Y., Dougherty, E. R. & Bittner, M. L. (1997) J. Biomed. Optics 2, 364-374.
32. Paavola, P., Avela, K., Horelli-Kuitunen, N., Bärlund, M., Kallioniemi, A., Idanheimo, N., Kyttälä, M., de la Chapelle, A., Palotie, A., Lehesjoki, A.-E. & Peltonen, L. (1999) Genome Res. 9, 267-276.
33. Chou, M. M. & Blenis, J. (1995) Curr. Opin. Cell Biol. 7, 806-814.
34. Zheng, P., Eastman, J., Vande Pol, S. & Pimplikar, S. W. (1998) Proc. Natl. Acad. Sci. USA 95, 14745-14750.
35. Avela, K., Lipsanen-Nyman, M., Idanheimo, N., Seemanova, E., Rosengren, S., Mäkelä, T. P., Perheentupa, J., de la Chapelle, A. & Lehesjoki, A.-E. (2000) Nat. Genet. 25, 298-301.
36. Saurin, A. J., Borden, K. L., Boddy, M. N. & Freemont, P. S. (1996) Trends Biochem. Sci. 21, 208-214.
37. Slack, F. J. & Ruvkun, G. (1998) Trends Biochem. Sci. 23, 474-475.
38. Mangelsdorf, D. J. & Evans, R. M. (1995) Cell 83, 841-850.