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Volumn 166, Issue 1-2, 2010, Pages 48-53

Duplex real-time qRT-PCR for the detection of hepatitis A virus in water and raspberries using the MS2 bacteriophage as a process control

Author keywords

Hepatitis A virus; MS2 bacteriophage; Process control; Raspberry; Real time qRT PCR; Water

Indexed keywords

ARTICLE; CONTROLLED STUDY; FALSE NEGATIVE RESULT; HEPATITIS A VIRUS; MS2 VIRUS; NONHUMAN; NUCLEIC ACID ANALYSIS; PRIORITY JOURNAL; QUANTITATIVE STUDY; RASPBERRY; REAL TIME POLYMERASE CHAIN REACTION; RELIABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS DETECTION; WATER ANALYSIS;

EID: 77952589675     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2010.02.017     Document Type: Article
Times cited : (48)

References (28)
  • 1
    • 33846172009 scopus 로고    scopus 로고
    • Procedure for rapid concentration and detection of enteric viruses from berries and vegetables
    • Butot S., Putallaz T., Sánchez G. Procedure for rapid concentration and detection of enteric viruses from berries and vegetables. Appl. Environ. Microbiol. 2007, 73:186-192.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 186-192
    • Butot, S.1    Putallaz, T.2    Sánchez, G.3
  • 2
    • 33751243056 scopus 로고    scopus 로고
    • Surrogates for the study of norovirus stability and inactivation in the environment: a comparison of murine norovirus and feline calicivirus
    • Cannon J.L., Papafragkou E., Park G.W., Osborne J., Jaykus L.A., Vinjé J. Surrogates for the study of norovirus stability and inactivation in the environment: a comparison of murine norovirus and feline calicivirus. J. Food Protect. 2006, 69:2761-2765.
    • (2006) J. Food Protect. , vol.69 , pp. 2761-2765
    • Cannon, J.L.1    Papafragkou, E.2    Park, G.W.3    Osborne, J.4    Jaykus, L.A.5    Vinjé, J.6
  • 3
    • 49049090021 scopus 로고    scopus 로고
    • Comparison of the NucliSens easyMAG and Qiagen BioRobot 9604 nucleic acid extraction systems for diagnosis of RNA and DNA respiratory viruses on nasopharyngeal aspirates
    • Chan K.H., Yam W.C., Pang C.M., Chan K.M., Lam S.Y., Lo K.F., Poon L.L., Peiris M.J. Comparison of the NucliSens easyMAG and Qiagen BioRobot 9604 nucleic acid extraction systems for diagnosis of RNA and DNA respiratory viruses on nasopharyngeal aspirates. J. Clin. Microbiol. 2008, 46:2195-2199.
    • (2008) J. Clin. Microbiol. , vol.46 , pp. 2195-2199
    • Chan, K.H.1    Yam, W.C.2    Pang, C.M.3    Chan, K.M.4    Lam, S.Y.5    Lo, K.F.6    Poon, L.L.7    Peiris, M.J.8
  • 4
    • 33745152691 scopus 로고    scopus 로고
    • Development, evaluation and standardization of a real-time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples
    • Costafreda M.I., Bosch A., Pinto R.M. Development, evaluation and standardization of a real-time TaqMan reverse transcription-PCR assay for quantification of hepatitis A virus in clinical and shellfish samples. Appl. Environ. Microbiol. 2006, 72:3846-3855.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 3846-3855
    • Costafreda, M.I.1    Bosch, A.2    Pinto, R.M.3
  • 5
    • 0023263622 scopus 로고
    • Development of a plaque assay for a cytopathic, rapidly replicating isolate of hepatitis A virus
    • Cromeans T., Sobsey M.D., Fields H.A. Development of a plaque assay for a cytopathic, rapidly replicating isolate of hepatitis A virus. J. Med. Virol. 1987, 22:45-56.
    • (1987) J. Med. Virol. , vol.22 , pp. 45-56
    • Cromeans, T.1    Sobsey, M.D.2    Fields, H.A.3
  • 6
    • 70649108724 scopus 로고    scopus 로고
    • Duplex real-time PCR for the detection of hepatitis A virus in shellfish using feline calicivirus as a process control
    • Di Pasquale S., Paniconi M., De Medici D., Suffredini E., Croci L. Duplex real-time PCR for the detection of hepatitis A virus in shellfish using feline calicivirus as a process control. J. Virol. Methods 2010, 163:96-100.
    • (2010) J. Virol. Methods , vol.163 , pp. 96-100
    • Di Pasquale, S.1    Paniconi, M.2    De Medici, D.3    Suffredini, E.4    Croci, L.5
  • 7
    • 24744438458 scopus 로고    scopus 로고
    • Use of bacteriophage MS2 as an internal control in viral reverse transcription-PCR assays
    • Dreier J., Störmer M., Kleesiek K. Use of bacteriophage MS2 as an internal control in viral reverse transcription-PCR assays. J. Clin. Microbiol. 2005, 43:4551-4557.
    • (2005) J. Clin. Microbiol. , vol.43 , pp. 4551-4557
    • Dreier, J.1    Störmer, M.2    Kleesiek, K.3
  • 8
    • 33645849799 scopus 로고    scopus 로고
    • Intra-laboratory validation of a concentration method adapted for the enumeration of infectious F-specific RNA coliphage, enterovirus, and hepatitis A virus from inoculated leaves of salad vegetables
    • Dubois E., Hennechart C., Deboosère N., Merle G., Legeay O., Burger C., Le Calvé M., Lombard B., Ferré V., Traoré O. Intra-laboratory validation of a concentration method adapted for the enumeration of infectious F-specific RNA coliphage, enterovirus, and hepatitis A virus from inoculated leaves of salad vegetables. Int. J. Food Microbiol. 2006, 108:164-171.
    • (2006) Int. J. Food Microbiol. , vol.108 , pp. 164-171
    • Dubois, E.1    Hennechart, C.2    Deboosère, N.3    Merle, G.4    Legeay, O.5    Burger, C.6    Le Calvé, M.7    Lombard, B.8    Ferré, V.9    Traoré, O.10
  • 9
    • 34249083843 scopus 로고    scopus 로고
    • Detection and quantification by real-time RT-PCR of hepatitis A virus from inoculated tap waters, salad vegetables, and soft fruits: characterization of the method performances
    • Dubois E., Hennechart C., Merle G., Burger C., Hmila N., Ruelle S., Perelle S., Ferré V. Detection and quantification by real-time RT-PCR of hepatitis A virus from inoculated tap waters, salad vegetables, and soft fruits: characterization of the method performances. Int. J. Food Microbiol. 2007, 117:141-149.
    • (2007) Int. J. Food Microbiol. , vol.117 , pp. 141-149
    • Dubois, E.1    Hennechart, C.2    Merle, G.3    Burger, C.4    Hmila, N.5    Ruelle, S.6    Perelle, S.7    Ferré, V.8
  • 10
    • 0030773201 scopus 로고    scopus 로고
    • Rotavirus and hepatitis A virus in market lettuce (Latuca sativa) in Costa Rica
    • Hernández F., Monge R., Jiménez C., Taylor L. Rotavirus and hepatitis A virus in market lettuce (Latuca sativa) in Costa Rica. Int. J. Food Microbiol. 1997, 37:221-223.
    • (1997) Int. J. Food Microbiol. , vol.37 , pp. 221-223
    • Hernández, F.1    Monge, R.2    Jiménez, C.3    Taylor, L.4
  • 11
    • 2442562584 scopus 로고    scopus 로고
    • Practical considerations in design of internal amplification controls for diagnostic PCR assays
    • (comment in: J. Clin. Microbiol. 42, 3379-3380)
    • Hoorfar J., Malorny B., Abdulmawjood A., Cook N., Wagner M., Fach P. Practical considerations in design of internal amplification controls for diagnostic PCR assays. J. Clin. Microbiol. 2004, 42:1863-1868. (comment in: J. Clin. Microbiol. 42, 3379-3380).
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 1863-1868
    • Hoorfar, J.1    Malorny, B.2    Abdulmawjood, A.3    Cook, N.4    Wagner, M.5    Fach, P.6
  • 13
    • 43049107976 scopus 로고    scopus 로고
    • Aggregation and surface properties of F-specific RNA phages: implication for membrane filtration processes
    • Langlet J., Gaboriaud F., Duval J.F., Gantzer C. Aggregation and surface properties of F-specific RNA phages: implication for membrane filtration processes. Water Res. 2008, 42:2769-2777.
    • (2008) Water Res. , vol.42 , pp. 2769-2777
    • Langlet, J.1    Gaboriaud, F.2    Duval, J.F.3    Gantzer, C.4
  • 14
    • 0026069630 scopus 로고
    • Antigenic and genetic variation in cytopathic hepatitis A virus variants arising during persistent infection: evidence for genetic recombination
    • Lemon S.M., Murphy P.C., Shields P.A., Ping L.H., Feinstone S.M., Cromeans T., Jansen R.W. Antigenic and genetic variation in cytopathic hepatitis A virus variants arising during persistent infection: evidence for genetic recombination. J. Virol. 1991, 65:2056-2065.
    • (1991) J. Virol. , vol.65 , pp. 2056-2065
    • Lemon, S.M.1    Murphy, P.C.2    Shields, P.A.3    Ping, L.H.4    Feinstone, S.M.5    Cromeans, T.6    Jansen, R.W.7
  • 15
    • 33847065406 scopus 로고    scopus 로고
    • Evaluation of NucliSens easyMAG for automated nucleic acid extraction from various clinical specimens
    • Loens K., Bergs K., Ursi D., Goossens H., Ieven M. Evaluation of NucliSens easyMAG for automated nucleic acid extraction from various clinical specimens. J. Clin. Microbiol. 2007, 45:421-425.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 421-425
    • Loens, K.1    Bergs, K.2    Ursi, D.3    Goossens, H.4    Ieven, M.5
  • 16
    • 38049076025 scopus 로고    scopus 로고
    • Evaluation of the NucliSens miniMAG RNA extraction and real-time NASBA applications for the detection of Mycoplasma pneumoniae and Chlamydophila pneumoniae in throat swabs
    • Loens K., Ursi D., Goossens H., Ieven M. Evaluation of the NucliSens miniMAG RNA extraction and real-time NASBA applications for the detection of Mycoplasma pneumoniae and Chlamydophila pneumoniae in throat swabs. J. Microbiol. Methods 2008, 72:217-219.
    • (2008) J. Microbiol. Methods , vol.72 , pp. 217-219
    • Loens, K.1    Ursi, D.2    Goossens, H.3    Ieven, M.4
  • 17
    • 0036596596 scopus 로고    scopus 로고
    • General outbreaks of infectious intestinal disease linked with salad vegetables and fruit, England and Wales, 1992-2000
    • Long S.M., Adak G.K., O'Brien S.J., Gillespie I.A. General outbreaks of infectious intestinal disease linked with salad vegetables and fruit, England and Wales, 1992-2000. Commun. Dis. Public Health 2002, 5:101-105.
    • (2002) Commun. Dis. Public Health , vol.5 , pp. 101-105
    • Long, S.M.1    Adak, G.K.2    O'Brien, S.J.3    Gillespie, I.A.4
  • 19
    • 18144436914 scopus 로고    scopus 로고
    • Standardised evaluation of the performance of a simple membrane filtration-elution method to concentrate bacteriophages from drinking water
    • Méndez J., Audicana A., Isern A., Llaneza J., Moreno B., Tarancón M.L., Jofre J., Lucena F. Standardised evaluation of the performance of a simple membrane filtration-elution method to concentrate bacteriophages from drinking water. J. Virol. Methods 2004, 117:19-25.
    • (2004) J. Virol. Methods , vol.117 , pp. 19-25
    • Méndez, J.1    Audicana, A.2    Isern, A.3    Llaneza, J.4    Moreno, B.5    Tarancón, M.L.6    Jofre, J.7    Lucena, F.8
  • 22
    • 34447573808 scopus 로고    scopus 로고
    • An internally controlled, one-step, real-time RT-PCR assay for norovirus detection and genogrouping
    • Rolfe K.J., Parmar S., Mururi D., Wreghitt T.G., Jalal H., Zhang H., Curran M.D. An internally controlled, one-step, real-time RT-PCR assay for norovirus detection and genogrouping. J. Clin. Virol. 2007, 39:318-321.
    • (2007) J. Clin. Virol. , vol.39 , pp. 318-321
    • Rolfe, K.J.1    Parmar, S.2    Mururi, D.3    Wreghitt, T.G.4    Jalal, H.5    Zhang, H.6    Curran, M.D.7
  • 24
    • 22144473001 scopus 로고    scopus 로고
    • Isolation and detection of enterovirus RNA from large-volume water samples by using the NucliSens miniMAG system and real-time nucleic acid sequence-based amplification
    • Rutjes S.A., Italiaander R., van den Berg H.H., Lodder W.J., de Roda Husman A.M. Isolation and detection of enterovirus RNA from large-volume water samples by using the NucliSens miniMAG system and real-time nucleic acid sequence-based amplification. Appl. Environ. Microbiol. 2005, 71:3734-3740.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3734-3740
    • Rutjes, S.A.1    Italiaander, R.2    van den Berg, H.H.3    Lodder, W.J.4    de Roda Husman, A.M.5
  • 25
    • 34347360835 scopus 로고    scopus 로고
    • Hepatitis A virus detection in food: current and future prospects
    • Sánchez G., Bosch A., Pintó R.M. Hepatitis A virus detection in food: current and future prospects. Lett. Appl. Microbiol. 2007, 45:1-5.
    • (2007) Lett. Appl. Microbiol. , vol.45 , pp. 1-5
    • Sánchez, G.1    Bosch, A.2    Pintó, R.M.3
  • 26
    • 34247274198 scopus 로고    scopus 로고
    • Evaluation of the performance of the automated NucliSENS easyMAG and EasyQ systems versus the Roche AmpliPrep-AMPLICOR combination for high-throughput monitoring of human immunodeficiency virus load
    • Stevens W., Horsfield P., Scott L.E. Evaluation of the performance of the automated NucliSENS easyMAG and EasyQ systems versus the Roche AmpliPrep-AMPLICOR combination for high-throughput monitoring of human immunodeficiency virus load. J. Clin. Microbiol. 2007, 45:1244-1249.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 1244-1249
    • Stevens, W.1    Horsfield, P.2    Scott, L.E.3
  • 27
    • 1542356381 scopus 로고    scopus 로고
    • Standardized determination of real-time PCR efficiency from a single reaction set-up
    • (Erratum in: Nucleic Acids Res. 31 (22) 2003, 6688)
    • Tichopad A., Dilger M., Schwarz G., Plaffl M.W. Standardized determination of real-time PCR efficiency from a single reaction set-up. Nucleic Acids Res. 2003, 31(20):e122. (Erratum in: Nucleic Acids Res. 31 (22) 2003, 6688).
    • (2003) Nucleic Acids Res. , vol.31 , Issue.20
    • Tichopad, A.1    Dilger, M.2    Schwarz, G.3    Plaffl, M.W.4
  • 28
    • 62149149108 scopus 로고    scopus 로고
    • Comparative analysis of different TaqMan real-time RT-PCR assays for the detection of swine Hepatitis E virus and integration of Feline calicivirus as internal control
    • Ward P., Poitras E., Leblanc D., Letellier A., Brassard J., Plante D., Houde A. Comparative analysis of different TaqMan real-time RT-PCR assays for the detection of swine Hepatitis E virus and integration of Feline calicivirus as internal control. J. Appl. Microbiol. 2009, 106:1360-1369.
    • (2009) J. Appl. Microbiol. , vol.106 , pp. 1360-1369
    • Ward, P.1    Poitras, E.2    Leblanc, D.3    Letellier, A.4    Brassard, J.5    Plante, D.6    Houde, A.7


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