-
1
-
-
0032883772
-
Novel reactions involved in energy conservation by methanogenic archaea
-
Deppenmeier U, Lienard T, Gottschalk G, (1999) Novel reactions involved in energy conservation by methanogenic archaea. FEBS letters 457: 291-297.
-
(1999)
FEBS Letters
, vol.457
, pp. 291-297
-
-
Deppenmeier, U.1
Lienard, T.2
Gottschalk, G.3
-
2
-
-
0026801609
-
Methane from acetate
-
Ferry JG, (1992) Methane from acetate. J Bacteriol 174: 5489-5495.
-
(1992)
J Bacteriol
, vol.174
, pp. 5489-5495
-
-
Ferry, J.G.1
-
3
-
-
23044513880
-
Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway
-
Welander PV, Metcalf WW, (2005) Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway. Proc Natl Acad Sci USA 102: 10664-10669.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 10664-10669
-
-
Welander, P.V.1
Metcalf, W.W.2
-
4
-
-
0036225678
-
The genome of M. acetivorans reveals extensive metabolic and physiological diversity
-
Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, et al. (2002) The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res 12: 532-542.
-
(2002)
Genome Res
, vol.12
, pp. 532-542
-
-
Galagan, J.E.1
Nusbaum, C.2
Roy, A.3
Endrizzi, M.G.4
Macdonald, P.5
-
5
-
-
33751081532
-
The Methanosarcina barkeri Genome: Comparative Analysis with Methanosarcina acetivorans and Methanosarcina mazei Reveals Extensive Rearrangement within Methanosarcinal Genomes
-
Maeder DL, Anderson I, Brettin TS, Bruce DC, Gilna P, et al. (2006) The Methanosarcina barkeri Genome: Comparative Analysis with Methanosarcina acetivorans and Methanosarcina mazei Reveals Extensive Rearrangement within Methanosarcinal Genomes. J Bacteriol 188: 7922-7931.
-
(2006)
J Bacteriol
, vol.188
, pp. 7922-7931
-
-
Maeder, D.L.1
Anderson, I.2
Brettin, T.S.3
Bruce, D.C.4
Gilna, P.5
-
6
-
-
0035988323
-
The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea
-
Deppenmeier U, Johann A, Hartsch T, Merkl R, Schmitz RA, et al. (2002) The genome of Methanosarcina mazei: Evidence for lateral gene transfer between bacteria and archaea. J Mol Microbiol Biotechnol 4: 453-461.
-
(2002)
J Mol Microbiol Biotechnol
, vol.4
, pp. 453-461
-
-
Deppenmeier, U.1
Johann, A.2
Hartsch, T.3
Merkl, R.4
Schmitz, R.A.5
-
7
-
-
0019903429
-
Methanothrix soehngenii gen. nov. sp. nov., a new acetotrophic non-hydrogen-oxidizing methane bacterium
-
Huser BA, Wuhrmann K, Zehnder AJB, (1982) Methanothrix soehngenii gen. nov. sp. nov., a new acetotrophic non-hydrogen-oxidizing methane bacterium. Arch Microbiol 132: 1-9.
-
(1982)
Arch Microbiol
, vol.132
, pp. 1-9
-
-
Huser, B.A.1
Wuhrmann, K.2
Zehnder, A.J.B.3
-
8
-
-
31144438151
-
Methanosaeta harundinacea sp. nov., a novel acetate-scavenging methanogen isolated from a UASB reactor
-
Ma K, Liu X, Dong X, (2006) Methanosaeta harundinacea sp. nov., a novel acetate-scavenging methanogen isolated from a UASB reactor. Int J Syst Evol Microbiol 56: 127-131.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 127-131
-
-
Ma, K.1
Liu, X.2
Dong, X.3
-
9
-
-
0029967858
-
Pathways of energy conservation in methanogenic archaea
-
Deppenmeier U, Müller V, Gottschalk G, (1996) Pathways of energy conservation in methanogenic archaea. Arch Microbiol 165: 149-163.
-
(1996)
Arch Microbiol
, vol.165
, pp. 149-163
-
-
Deppenmeier, U.1
Müller, V.2
Gottschalk, G.3
-
10
-
-
20144385037
-
Trace methane oxidation studied in several Euryarchaeota under diverse conditions
-
Moran JJ, House CH, Freeman KH, Ferry JG, (2005) Trace methane oxidation studied in several Euryarchaeota under diverse conditions. Archaea 1: 303-309.
-
(2005)
Archaea
, vol.1
, pp. 303-309
-
-
Moran, J.J.1
House, C.H.2
Freeman, K.H.3
Ferry, J.G.4
-
11
-
-
0037188554
-
Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments
-
Orphan VJ, House CH, Hinrichs KU, McKeegan KD, DeLong EF, (2002) Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments. Proc Natl Acad Sci USA 99: 7663-7668.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 7663-7668
-
-
Orphan, V.J.1
House, C.H.2
Hinrichs, K.U.3
McKeegan, K.D.4
DeLong, E.F.5
-
12
-
-
0031664705
-
The formylmethanofuran dehydrogenase isoenzymes in Methanobacterium wolfei and Methanobacterium thermoautotrophicum: induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme
-
Hochheimer, A, Hedderich R, Thauer RK, (1998) The formylmethanofuran dehydrogenase isoenzymes in Methanobacterium wolfei and Methanobacterium thermoautotrophicum: induction of the molybdenum isoenzyme by molybdate and constitutive synthesis of the tungsten isoenzyme. Arch Microbiol 170: 389-393.
-
(1998)
Arch Microbiol
, vol.170
, pp. 389-393
-
-
Hochheimer, A.1
Hedderich, R.2
Thauer, R.K.3
-
13
-
-
15944384321
-
Genetic analysis of mch mutants in two Methanosarcina species demonstrates multiple roles for the methanopterin-dependent C-1 oxidation/reduction pathway and differences in H2 metabolism between closely related species
-
Guss AM, Mukhopadhyay B, Zhang JK, Metcalf WW, (2005) Genetic analysis of mch mutants in two Methanosarcina species demonstrates multiple roles for the methanopterin-dependent C-1 oxidation/reduction pathway and differences in H2 metabolism between closely related species. Mol Microbiol 55: 1671-1680.
-
(2005)
Mol Microbiol
, vol.55
, pp. 1671-1680
-
-
Guss, A.M.1
Mukhopadhyay, B.2
Zhang, J.K.3
Metcalf, W.W.4
-
14
-
-
0015359973
-
Conservation and transformation of energy by bacterial membranes
-
Harold F, (1972) Conservation and transformation of energy by bacterial membranes. Bacteriol Rev 36: 172-230.
-
(1972)
Bacteriol Rev
, vol.36
, pp. 172-230
-
-
Harold, F.1
-
15
-
-
1342290477
-
Ady2p is essential for the acetate permease activity in the yeast Saccharomyces cerevisiae
-
Paiva S, Devaux F, Barbosa S, Jacq C, Casal M, (2004) Ady2p is essential for the acetate permease activity in the yeast Saccharomyces cerevisiae. Yeast 21: 201-210.
-
(2004)
Yeast
, vol.21
, pp. 201-210
-
-
Paiva, S.1
Devaux, F.2
Barbosa, S.3
Jacq, C.4
Casal, M.5
-
16
-
-
0024297194
-
Purification and characterization of acetate kinase from acetate-grown Methanosarcina thermophila. Evidence for regulation of synthesis
-
Aceti DJ, Ferry JG, (1988) Purification and characterization of acetate kinase from acetate-grown Methanosarcina thermophila. Evidence for regulation of synthesis. J Biol Chem 263: 15444-15448.
-
(1988)
J Biol Chem
, vol.263
, pp. 15444-15448
-
-
Aceti, D.J.1
Ferry, J.G.2
-
17
-
-
0023656817
-
EPR properties of the Ni-Fe-C center in an enzyme complex with carbon monoxide dehydrogenase activity from acetate-grown Methanosarcina thermophila. Evidence that acetyl-CoA is a physiological substrate
-
Terlesky KC, Barber MJ, Aceti DJ, Ferry JG, (1987) EPR properties of the Ni-Fe-C center in an enzyme complex with carbon monoxide dehydrogenase activity from acetate-grown Methanosarcina thermophila. Evidence that acetyl-CoA is a physiological substrate. J Biol Chem 262: 15392-15395.
-
(1987)
J Biol Chem
, vol.262
, pp. 15392-15395
-
-
Terlesky, K.C.1
Barber, M.J.2
Aceti, D.J.3
Ferry, J.G.4
-
18
-
-
76449096786
-
Methanogenesis by Methanosarcina acetivorans involves two structurally and functionally distinct classes of heterodisulfide reductase
-
Buan NR, Metcalf WW, (2010) Methanogenesis by Methanosarcina acetivorans involves two structurally and functionally distinct classes of heterodisulfide reductase. Mol Microbiol 75: 843-853.
-
(2010)
Mol Microbiol
, vol.75
, pp. 843-853
-
-
Buan, N.R.1
Metcalf, W.W.2
-
19
-
-
33645462347
-
Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri
-
Feist AM, Scholten JCM, Palsson B, Brockman FJ, Ideker T, (2006) Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri. Mol Syst Biol 2: 2006.0004.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Feist, A.M.1
Scholten, J.C.M.2
Palsson, B.3
Brockman, F.J.4
Ideker, T.5
-
20
-
-
30744460928
-
Electron transport in the pathway of acetate conversion to methane in the marine archaeon Methanosarcina acetivorans
-
Li Q, Li L, Rejtar T, Lessner DJ, Karger BL, et al. (2006) Electron transport in the pathway of acetate conversion to methane in the marine archaeon Methanosarcina acetivorans. J Bacteriol 188: 702-710.
-
(2006)
J Bacteriol
, vol.188
, pp. 702-710
-
-
Li, Q.1
Li, L.2
Rejtar, T.3
Lessner, D.J.4
Karger, B.L.5
-
21
-
-
79952176138
-
The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments
-
Archaea
-
Spring S, Scheuner C, Lapidus A, Lucas S, Glavina DRT, et al. (2010) The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments. Archaea.
-
(2010)
-
-
Spring, S.1
Scheuner, C.2
Lapidus, A.3
Lucas, S.4
Glavina, D.R.T.5
-
22
-
-
84861000411
-
Membrane-bound electron transport in Methanosaeta thermophila
-
J bacteriol, Adv Clin Path. In press
-
Welte C, Deppenmeier U, (2011) Membrane-bound electron transport in Methanosaeta thermophila. J bacteriol Adv Clin Path. In press.
-
(2011)
-
-
Welte, C.1
Deppenmeier, U.2
-
23
-
-
75149154830
-
Function of Ech hydrogenase in ferredoxin-dependent, membrane-bound electron transport in Methanosarcina mazei
-
Welte C, Kallnik V, Grapp M, Bender G, Ragsdale S, et al. (2010) Function of Ech hydrogenase in ferredoxin-dependent, membrane-bound electron transport in Methanosarcina mazei. J bacteriol 192: 674-678.
-
(2010)
J Bacteriol
, vol.192
, pp. 674-678
-
-
Welte, C.1
Kallnik, V.2
Grapp, M.3
Bender, G.4
Ragsdale, S.5
-
24
-
-
24044455869
-
Genome sequencing in open microfabricated high density picoliter reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in open microfabricated high density picoliter reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
25
-
-
0033572258
-
Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project
-
Tettelin H, Radune D, Kasif S, Khouri H, Salzberg SL, (1999) Optimized multiplex PCR: efficiently closing a whole-genome shotgun sequencing project. Genomics 62: 500-507.
-
(1999)
Genomics
, vol.62
, pp. 500-507
-
-
Tettelin, H.1
Radune, D.2
Kasif, S.3
Khouri, H.4
Salzberg, S.L.5
-
26
-
-
0032519353
-
GeneMark. hmm: new solutions for gene finding
-
Lukashin AV, Borodovsky M, (1998) GeneMark. hmm: new solutions for gene finding. Nucleic Acids Res 26: 1107-1115.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
27
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL, (1999) Improved microbial gene identification with GLIMMER. Nucleic Acids Res 27: 4636-4641.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
28
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G, Nielsen H, (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
29
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 0955-0964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 0955-0964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
32
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Sch ffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Sch ffer, A.A.3
Zhang, J.4
Zhang, Z.5
-
33
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov RL, Koonin EV, Lipman DJ, (1997) A genomic perspective on protein families. Science 278: 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
34
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S, (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucl Acids Res 28: 27-30.
-
(2000)
Nucl Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
35
-
-
15844431346
-
PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
-
Gardy JL, Laird M, Chen F, Rey S, Walsh C, et al. (2005) PSORTb v. 2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 21: 617-623.
-
(2005)
Bioinformatics
, vol.21
, pp. 617-623
-
-
Gardy, J.L.1
Laird, M.2
Chen, F.3
Rey, S.4
Walsh, C.5
-
36
-
-
25444441166
-
Prediction of twin-arginine signal peptides
-
Bendtsen J, Nielsen H, Widdick D, Palmer T, Brunak S, (2005) Prediction of twin-arginine signal peptides. BMC Bioinformatics 6: 167.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 167
-
-
Bendtsen, J.1
Nielsen, H.2
Widdick, D.3
Palmer, T.4
Brunak, S.5
-
37
-
-
0037317124
-
Prokaryotic utilization of the twin-arginine translocation pathway: a genomic survey
-
Dilks K, Rose R, Hartmann E, Pohlschroder M, (2003) Prokaryotic utilization of the twin-arginine translocation pathway: a genomic survey. J Bacteriol 185: 1478-1483.
-
(2003)
J Bacteriol
, vol.185
, pp. 1478-1483
-
-
Dilks, K.1
Rose, R.2
Hartmann, E.3
Pohlschroder, M.4
-
38
-
-
80052731074
-
Three feruloyl esterases in Cellulosilyticum ruminocola H1 act synergistically to hydrolyze esterified polysaccharides
-
Li J, Cai S, Luo Y, Dong X, (2011) Three feruloyl esterases in Cellulosilyticum ruminocola H1 act synergistically to hydrolyze esterified polysaccharides. Appl Environ Microbiol 77: 6141-6147.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 6141-6147
-
-
Li, J.1
Cai, S.2
Luo, Y.3
Dong, X.4
-
39
-
-
0031255108
-
Thymic expression of autoantigens correlates with resistance to autoimmune disease
-
Egwuagu CE, Charukamnoetkanok P, Gery I, (1997) Thymic expression of autoantigens correlates with resistance to autoimmune disease. J Immunol 159: 3109-3112.
-
(1997)
J Immunol
, vol.159
, pp. 3109-3112
-
-
Egwuagu, C.E.1
Charukamnoetkanok, P.2
Gery, I.3
-
40
-
-
84860998456
-
Methanobacterium mobile sp
-
In: nov, nov Methanobacteriumflexilesp, Basin isolatedfromthelakesedimentofQaidam, editors, Int J Syst Evol Microbiol, Adv Clin Path. In press
-
Zhu J, Liu X, Dong X, (2011) Methanobacterium mobile sp. In: nov, nov Methanobacteriumflexilesp, Basin isolatedfromthelakesedimentofQaidam, editors. China Int J Syst Evol Microbiol Adv Clin Path. In press.
-
(2011)
China
-
-
Zhu, J.1
Liu, X.2
Dong, X.3
-
41
-
-
77953638153
-
Measurement of the isotope ratio of acetic acid in vinegar by HS-SPME-GC-TC/C-IRMS
-
Hattori R, Yamada K, Shibata H, Hirano S, Tajima O, et al. (2010) Measurement of the isotope ratio of acetic acid in vinegar by HS-SPME-GC-TC/C-IRMS. J Agric Food Chem 58: 7115-7118.
-
(2010)
J Agric Food Chem
, vol.58
, pp. 7115-7118
-
-
Hattori, R.1
Yamada, K.2
Shibata, H.3
Hirano, S.4
Tajima, O.5
-
42
-
-
33947225165
-
Inter-laboratory comparison of elemental analysis and gas chromatography combustion isotope ratio mass spectrometry (GC-C-IRMS). Part I: δ13C measurements of selected compounds for the development of an isotopic Grob-test
-
Serra F, Janeiro A, Calderone G, Rojas J, Rhodes C, et al. (2007) Inter-laboratory comparison of elemental analysis and gas chromatography combustion isotope ratio mass spectrometry (GC-C-IRMS). Part I: δ13C measurements of selected compounds for the development of an isotopic Grob-test. J Mass Spectrom 42: 361-369.
-
(2007)
J Mass Spectrom
, vol.42
, pp. 361-369
-
-
Serra, F.1
Janeiro, A.2
Calderone, G.3
Rojas, J.4
Rhodes, C.5
-
43
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
44
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
45
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov R, Fedorova N, Jackson J, Jacobs A, Kiryutin B, et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.1
Fedorova, N.2
Jackson, J.3
Jacobs, A.4
Kiryutin, B.5
|