메뉴 건너뛰기




Volumn 39, Issue 4, 2012, Pages 342-350

Validation of reference genes for real-time quantitative PCR normalisation in non-heading Chinese cabbage

Author keywords

Brassica rapa ssp. chinensis; gene expression; qRT PCR; reference genes

Indexed keywords

BIOTIC FACTOR; FUNGUS; GENE EXPRESSION; LEAFY VEGETABLE; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; REAL TIME;

EID: 84860765315     PISSN: 14454408     EISSN: None     Source Type: Journal    
DOI: 10.1071/FP11246     Document Type: Article
Times cited : (39)

References (28)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Andersen CL, Jensen JL, Ørntoft TF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Research 64(15), 5245-5250. doi:10.1158/0008-5472.CAN-04-0496 (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 2
    • 33644958616 scopus 로고    scopus 로고
    • Generic normalization method for real-time PCR: Application for the analysis of the mannanase gene expressed in germinating tomato seed
    • 10.1111/j.1742-4658.2006.05109.x
    • Argyropoulos D, Psallida C, Spyropoulos CG (2006) Generic normalization method for real-time PCR: application for the analysis of the mannanase gene expressed in germinating tomato seed. FEBS Journal 273(4), 770-777. doi:10.1111/j.1742-4658.2006.05109.x
    • (2006) FEBS Journal , vol.273 , Issue.4 , pp. 770-777
    • Argyropoulos, D.1    Psallida, C.2    Spyropoulos, C.G.3
  • 3
    • 71749104473 scopus 로고    scopus 로고
    • Housekeeping gene selection in poplar plants under Cd-stress: Comparative study for real-time PCR normalisation
    • 10.1071/FP09073
    • Basa B, Solti Á, Sárvári É, Tamás L (2009) Housekeeping gene selection in poplar plants under Cd-stress: comparative study for real-time PCR normalisation. Functional Plant Biology 36(12), 1079-1087. doi:10.1071/FP09073
    • (2009) Functional Plant Biology , vol.36 , Issue.12 , pp. 1079-1087
    • Basa, B.1    Solti, Á.2    Sárvári, É.3    Tamás, L.4
  • 4
    • 5444258598 scopus 로고    scopus 로고
    • Validating internal controls for quantitative plant gene expression studies
    • DOI 10.1186/1471-2229-4-14
    • Brunner A, Yakovlev I, Strauss S (2004) Validating internal controls for quantitative plant gene expression studies. BMC Plant Biology 4(1), 14. doi:10.1186/1471-2229-4-14 (Pubitemid 39364131)
    • (2004) BMC Plant Biology , vol.4 , pp. 14
    • Brunner, A.M.1    Yakovlev, I.A.2    Strauss, S.H.3
  • 5
    • 77955093325 scopus 로고    scopus 로고
    • Asurvey of quantitative realtime polymerase chain reaction internal reference genes for expression studies in Brassica napus
    • 10.1016/j.ab.2010.05.032
    • Chen X, Truksa M, Shah S, Weselake RJ (2010)Asurvey of quantitative realtime polymerase chain reaction internal reference genes for expression studies in Brassica napus. Analytical Biochemistry 405(1), 138-140. doi:10.1016/j.ab.2010.05.032
    • (2010) Analytical Biochemistry , vol.405 , Issue.1 , pp. 138-140
    • Chen, X.1    Truksa, M.2    Shah, S.3    Weselake, R.J.4
  • 6
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in arabidopsis
    • DOI 10.1104/pp.105.063743
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR (2005) Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiology 139(1), 5-17. doi:10.1104/pp.105.063743 (Pubitemid 43951587)
    • (2005) Plant Physiology , vol.139 , Issue.1 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.-R.5
  • 7
    • 2542466265 scopus 로고    scopus 로고
    • Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes
    • 10.1021/jf049915d
    • Ding J, Jia J, Yang L, Wen H, Zhang C, Liu W, ZhangD(2004) Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes. Journal of Agricultural and Food Chemistry 52(11), 3372-3377. doi:10.1021/jf049915d
    • (2004) Journal of Agricultural and Food Chemistry , vol.52 , Issue.11 , pp. 3372-3377
    • Ding, J.1    Jia, J.2    Yang, L.3    Wen, H.4    Zhang, C.5    Liu, W.6    Zhang, D.7
  • 8
    • 57049155443 scopus 로고    scopus 로고
    • Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR
    • 10.1186/1471-2229-8-112
    • Hong S-Y, Seo P, Yang M-S, Xiang F, Park C-M (2008) Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR.BMCPlant Biology 8(1), 112. doi:10.1186/1471-2229- 8-112
    • (2008) BMC Plant Biology , vol.8 , Issue.1 , pp. 112
    • Hong, S.-Y.1    Seo, P.2    Yang, M.-S.3    Xiang, F.4    Park, C.-M.5
  • 9
    • 33646854724 scopus 로고    scopus 로고
    • Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
    • DOI 10.1016/j.bbrc.2006.04.140, PII S0006291X06009685
    • Jain M, Nijhawan A, Tyagi A, Khurana J (2006) Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochemical and Biophysical Research Communications 345, 646-651. doi:10.1016/j.bbrc.2006. 04.140 (Pubitemid 43776982)
    • (2006) Biochemical and Biophysical Research Communications , vol.345 , Issue.2 , pp. 646-651
    • Jain, M.1    Nijhawan, A.2    Tyagi, A.K.3    Khurana, J.P.4
  • 11
    • 0344531001 scopus 로고    scopus 로고
    • Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice
    • 10.1023/A:10262980 32009
    • Kim BR, Nam HY, Kim SU, Kim SI, Chang YJ (2003) Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice. Biotechnology Letters 25(21), 1869-1872. doi:10.1023/A:10262980 32009
    • (2003) Biotechnology Letters , vol.25 , Issue.21 , pp. 1869-1872
    • Kim, B.R.1    Nam, H.Y.2    Kim, S.U.3    Kim, S.I.4    Chang, Y.J.5
  • 12
    • 0036667911 scopus 로고    scopus 로고
    • Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions
    • 10.1016/S0003-2697(02) 00021-0
    • Lekanne Deprez RH, FijnVandraat AC, Ruijter JM, Moorman AFM (2002) Sensitivity and accuracy of quantitative real-time polymerase chain reaction using SYBR green I depends on cDNA synthesis conditions. Analytical Biochemistry 307(1), 63-69. doi:10.1016/S0003-2697(02) 00021-0
    • (2002) Analytical Biochemistry , vol.307 , Issue.1 , pp. 63-69
    • Lekanne Deprez, R.H.1    FijnVandraat, A.C.2    Ruijter, J.M.3    Moorman, A.F.M.4
  • 13
    • 61849089336 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
    • 10.1016/j.ab.2009.01.024
    • Løvdal T, Lillo C (2009) Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress. Analytical Biochemistry 387(2), 238-242. doi:10.1016/j.ab.2009.01.024
    • (2009) Analytical Biochemistry , vol.387 , Issue.2 , pp. 238-242
    • Løvdal, T.1    Lillo, C.2
  • 16
    • 77954424658 scopus 로고    scopus 로고
    • Reference gene selection for real-Time quantitative polymerase chain reaction of mrna transcript levels in chinese cabbage brassica rapa l ssp pekinensis
    • 10.1007/s11105- 010-0185-1
    • Qi J, Yu S, Zhang F, Shen X, Zhao X, Yu Y, Zhang D (2010) Reference gene selection for real-time quantitative polymerase chain reaction of mRNA transcript levels in Chinese cabbage (Brassica rapa L. ssp. pekinensis). Plant Molecular Biology Reporter 28(4), 597-604. doi:10.1007/s11105- 010-0185-1
    • (2010) Plant Molecular Biology Reporter , vol.28 , Issue.4 , pp. 597-604
    • Qi, J.1    Yu, S.2    Zhang, F.3    Shen, X.4    Zhao, X.5    Yu, Y.6    Zhang, D.7
  • 17
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • DOI 10.1016/S0304-3940(02)01423-4
    • Ramakers C, Ruijter JM, Deprez RHL, Moorman AFM (2003) Assumptionfree analysis of quantitative real-time polymerase chain reaction (PCR) data. Neuroscience Letters 339(1), 62-66. doi:10.1016/S0304-3940(02) 01423-4 (Pubitemid 36263221)
    • (2003) Neuroscience Letters , vol.339 , Issue.1 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Lekanne Deprez, R.H.3    Moorman, A.F.M.4
  • 18
    • 34548222731 scopus 로고    scopus 로고
    • Housekeeping gene selection for quantitative real-time PCR assays in the seagrass Zosters marina subjected to heat stress
    • Ransbotyn V, Reusch TBH (2006) Housekeeping gene selection for quantitative real-time PCR assays in the seagrass Zosters marina subjected to heat stress. Limnology and Oceanography, Methods 4(NOV), 367-373. doi:10.4319/lom.2006.4.367 (Pubitemid 351774013)
    • (2006) Limnology and Oceanography: Methods , vol.4 , Issue.NOV. , pp. 367-373
    • Ransbotyn, V.1    Reusch, T.B.H.2
  • 19
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • DOI 10.1186/1471-2229-6-27
    • Reid K, Olsson N, Schlosser J, Peng F, Lund S (2006)Anoptimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biology 6(1), 27. doi:10.1186/1471-2229-6-27 (Pubitemid 44790527)
    • (2006) BMC Plant Biology , vol.6 , pp. 27
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5
  • 20
    • 42149126123 scopus 로고    scopus 로고
    • Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations
    • 10.1007/s00425-008-0706-4
    • Remans T, Smeets K, Opdenakker K, Mathijsen D, Vangronsveld J, Cuypers A (2008) Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. Planta 227(6), 1343-1349. doi:10.1007/s00425-008- 0706-4
    • (2008) Planta , vol.227 , Issue.6 , pp. 1343-1349
    • Remans, T.1    Smeets, K.2    Opdenakker, K.3    Mathijsen, D.4    Vangronsveld, J.5    Cuypers, A.6
  • 21
    • 33750295976 scopus 로고    scopus 로고
    • Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
    • DOI 10.1186/1471-2199-7-33
    • Silver N, Best S, Jiang J, Thein S (2006) Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC Molecular Biology 7(1), 33. doi:10.1186/1471-2199-7-33 (Pubitemid 44614265)
    • (2006) BMC Molecular Biology , vol.7 , pp. 33
    • Silver, N.1    Best, S.2    Jiang, J.3    Thein, S.L.4
  • 22
    • 0027518424 scopus 로고
    • Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase
    • Singh R, Green M (1993) Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase. Science 259(5093), 365-368. doi:10.1126/science.8420004 (Pubitemid 23055678)
    • (1993) Science , vol.259 , Issue.5093 , pp. 365-368
    • Singh, R.1    Green, M.R.2
  • 24
    • 80053386792 scopus 로고    scopus 로고
    • The genome of the mesopolyploid crop species Brassica rapa
    • The Brassica rapa Genome Sequencing Project Consortium 10.1038/ng.919
    • The Brassica rapa Genome Sequencing Project Consortium (2011) The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics 43, 1035-1039. doi:10.1038/ng.919
    • (2011) Nature Genetics , vol.43 , pp. 1035-1039
  • 25
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative rt-pcr data by geometric averaging of multiple internal control genes
    • research0034-research0034 10.1186/ gb-2002-3-7-research0034
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3(7), research0034-research0034. doi:10.1186/ gb-2002-3-7-research0034
    • (2002) Genome Biology , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 27
    • 36349037129 scopus 로고    scopus 로고
    • Association mapping of leaf traits, flowering time, and phytate content in Brassica rapa
    • DOI 10.1139/G07-078
    • Zhao J, Paulo M-J, Jamar D, Lou P, Van Eeuwijk F, Bonnema G, Vreugdenhil D, Koornneef M (2007) Association mapping of leaf traits, flowering time, and phytate content in Brassica rapa. Genome 50(10), 963-973. doi:10.1139/G07-078 (Pubitemid 350158297)
    • (2007) Genome , vol.50 , Issue.10 , pp. 963-973
    • Zhao, J.1    Paulo, M.-J.2    Jamar, D.3    Lou, P.4    Van Eeuwijk, F.5    Bonnema, G.6    Vreugdenhil, D.7    Koornneef, M.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.