메뉴 건너뛰기




Volumn 403, Issue 3-4, 2010, Pages 385-390

Evaluating reference genes to normalize gene expression in human epileptogenic brain tissues

Author keywords

GABA A receptor; GFAP; Housekeeping genes; NormFinder; Seizures; Temporal lobe epilepsy

Indexed keywords

4 AMINOBUTYRIC ACID A RECEPTOR ALPHA5; BETA 2 MICROGLOBULIN; BETA ACTIN; COMPLEMENTARY DNA; CYCLOPHILIN A; GLIAL FIBRILLARY ACIDIC PROTEIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE; MICROTUBULE ASSOCIATED PROTEIN 2; NEURON SPECIFIC ENOLASE; RIBOSOMAL PROTEIN L28; RIBOSOME PROTEIN; SUCCINATE DEHYDROGENASE; SYNAPTOPHYSIN; TATA BINDING PROTEIN; UBIQUITIN C; UNCLASSIFIED DRUG;

EID: 78650177818     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2010.10.138     Document Type: Article
Times cited : (33)

References (28)
  • 1
    • 43249099500 scopus 로고    scopus 로고
    • Twenty-five years of quantitative PCR for gene expression analysis
    • VanGuilder H.D., Vrana K.E., Freeman W.M. Twenty-five years of quantitative PCR for gene expression analysis. BioTechniques 2008, 44:619-626.
    • (2008) BioTechniques , vol.44 , pp. 619-626
    • VanGuilder, H.D.1    Vrana, K.E.2    Freeman, W.M.3
  • 2
    • 0342980411 scopus 로고    scopus 로고
    • Temporal lobe epilepsy associated upregulation of metabotropic glutamate receptors: correlated changes in mGluR1 mRNA and protein expression in experimental animals and human patients
    • Blümcke I., Becker A.J., Klein C., et al. Temporal lobe epilepsy associated upregulation of metabotropic glutamate receptors: correlated changes in mGluR1 mRNA and protein expression in experimental animals and human patients. J. Neuropathol. Exp. Neurol. 2000, 59:1-10.
    • (2000) J. Neuropathol. Exp. Neurol. , vol.59 , pp. 1-10
    • Blümcke, I.1    Becker, A.J.2    Klein, C.3
  • 3
    • 33244476007 scopus 로고    scopus 로고
    • Large-scale expression study of human mesial temporal lobe epilepsy: evidence for dysregulation of the neurotransmission and complement systems in the entorhinal cortex
    • Jamali S., Bartolomei F., Robaglia-Schlupp A., et al. Large-scale expression study of human mesial temporal lobe epilepsy: evidence for dysregulation of the neurotransmission and complement systems in the entorhinal cortex. Brain 2006, 129:625-641.
    • (2006) Brain , vol.129 , pp. 625-641
    • Jamali, S.1    Bartolomei, F.2    Robaglia-Schlupp, A.3
  • 4
    • 34249321633 scopus 로고    scopus 로고
    • Upregulated expression of postsynaptic density-93 and N-methyl-d-aspartate receptors subunits 2B mRNA in temporal lobe tissue of epilepsy
    • Liu F., Wang X., Li M., et al. Upregulated expression of postsynaptic density-93 and N-methyl-d-aspartate receptors subunits 2B mRNA in temporal lobe tissue of epilepsy. Biochem. Biophys. Res. Commun. 2007, 358:825-830.
    • (2007) Biochem. Biophys. Res. Commun. , vol.358 , pp. 825-830
    • Liu, F.1    Wang, X.2    Li, M.3
  • 5
    • 68149134517 scopus 로고    scopus 로고
    • Modulation of androgen and estrogen receptor expression by antiepileptic drugs and steroids in hippocampus of patients with temporal lobe epilepsy
    • Killer N., Hock M., Gehlhaus M., et al. Modulation of androgen and estrogen receptor expression by antiepileptic drugs and steroids in hippocampus of patients with temporal lobe epilepsy. Epilepsia 2009, 50:1875-1890.
    • (2009) Epilepsia , vol.50 , pp. 1875-1890
    • Killer, N.1    Hock, M.2    Gehlhaus, M.3
  • 6
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • Vandesompele J., Preter K.D., Pattyn F., et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3:0034.1-0034.12.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    Preter, K.D.2    Pattyn, F.3
  • 7
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR Data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., Ørntoft T.F. Normalization of real-time quantitative reverse transcription-PCR Data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Ørntoft, T.F.3
  • 8
    • 44449126570 scopus 로고    scopus 로고
    • Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue
    • Coulson D.T.R., Brockbank S., Quinn J.G., et al. Identification of valid reference genes for the normalization of RT qPCR gene expression data in human brain tissue. BMC Mol. Biol. 2008, 9:46.
    • (2008) BMC Mol. Biol. , vol.9 , pp. 46
    • Coulson, D.T.R.1    Brockbank, S.2    Quinn, J.G.3
  • 9
    • 67449149671 scopus 로고    scopus 로고
    • Detection of stable reference genes for real-time PCR analysis in schizophrenia and bipolar disorder
    • Silberberg G., Baruch K., Navon R. Detection of stable reference genes for real-time PCR analysis in schizophrenia and bipolar disorder. Anal. Biochem. 2009, 391:91-97.
    • (2009) Anal. Biochem. , vol.391 , pp. 91-97
    • Silberberg, G.1    Baruch, K.2    Navon, R.3
  • 10
    • 75149163414 scopus 로고    scopus 로고
    • Selection of reference gene expression in a schizophrenia brain cohort
    • Weickert C.S., Sheedy D., Rothmond D.A., et al. Selection of reference gene expression in a schizophrenia brain cohort. Aust. NZ J. Psychiatry 2010, 44:59-70.
    • (2010) Aust. NZ J. Psychiatry , vol.44 , pp. 59-70
    • Weickert, C.S.1    Sheedy, D.2    Rothmond, D.A.3
  • 11
    • 63449105583 scopus 로고    scopus 로고
    • Selection of suitable housekeeping genes for expression analysis in glioblastoma using quantitative RT-PCR
    • Valente V., Teixeira S.A., Neder L., et al. Selection of suitable housekeeping genes for expression analysis in glioblastoma using quantitative RT-PCR. BMC Mol. Biol. 2009, 10:17.
    • (2009) BMC Mol. Biol. , vol.10 , pp. 17
    • Valente, V.1    Teixeira, S.A.2    Neder, L.3
  • 12
    • 77957065848 scopus 로고    scopus 로고
    • Identification of valid endogenous control genes for determining gene expression in human glioma
    • Kreth S., Heyn J., Grau S., et al. Identification of valid endogenous control genes for determining gene expression in human glioma. Neurooncology 2010, 12:570-579.
    • (2010) Neurooncology , vol.12 , pp. 570-579
    • Kreth, S.1    Heyn, J.2    Grau, S.3
  • 13
    • 77749270482 scopus 로고    scopus 로고
    • Hyperpolarization-activated cation currents in human epilepsy
    • Wierschke S., Lehmann T.N., Dehnicke C., et al. Hyperpolarization-activated cation currents in human epilepsy. Epilepsia 2010, 51:404-414.
    • (2010) Epilepsia , vol.51 , pp. 404-414
    • Wierschke, S.1    Lehmann, T.N.2    Dehnicke, C.3
  • 16
    • 74049156876 scopus 로고    scopus 로고
    • Effects of antemortem and postmortem variables on human brain mRNA quality: a BrainNet Europe study
    • Durrenberger P.F., Fernando S., Kashefi S.N., et al. Effects of antemortem and postmortem variables on human brain mRNA quality: a BrainNet Europe study. J. Neuropathol. Exp. Neurol. 2009, 69:70-81.
    • (2009) J. Neuropathol. Exp. Neurol. , vol.69 , pp. 70-81
    • Durrenberger, P.F.1    Fernando, S.2    Kashefi, S.N.3
  • 17
    • 41949122431 scopus 로고    scopus 로고
    • Management of a twenty-first century brain bank: experience in the BrainNet Europe consortium
    • Bell J.E., Alafuzoff I., Al-Sarraj S., et al. Management of a twenty-first century brain bank: experience in the BrainNet Europe consortium. Acta Neuropathol. 2008, 115:497-507.
    • (2008) Acta Neuropathol. , vol.115 , pp. 497-507
    • Bell, J.E.1    Alafuzoff, I.2    Al-Sarraj, S.3
  • 18
    • 77950147813 scopus 로고    scopus 로고
    • Selection of reference genes for real-time quantitative reverse transcription-polymerase chain reaction in hippocampal structure in a murine model of temporal lobe epilepsy with focal seizures
    • Pernot F., Dorandeu F., Beaup C., et al. Selection of reference genes for real-time quantitative reverse transcription-polymerase chain reaction in hippocampal structure in a murine model of temporal lobe epilepsy with focal seizures. J. Neurosci. Res. 2010, 88:1000-1008.
    • (2010) J. Neurosci. Res. , vol.88 , pp. 1000-1008
    • Pernot, F.1    Dorandeu, F.2    Beaup, C.3
  • 19
    • 0034983291 scopus 로고    scopus 로고
    • Activity-induced expression of common reference genes in individual CNS neurons
    • Chen J., Sochivko D., Beck H., et al. Activity-induced expression of common reference genes in individual CNS neurons. Lab. Invest. 2001, 81:913-916.
    • (2001) Lab. Invest. , vol.81 , pp. 913-916
    • Chen, J.1    Sochivko, D.2    Beck, H.3
  • 20
    • 33644975004 scopus 로고    scopus 로고
    • RNA integrity and the effect on the real-time qRT-PCR performance
    • Fleige S., Pfaffl M.W. RNA integrity and the effect on the real-time qRT-PCR performance. Mol. Aspects Med. 2006, 27:126-139.
    • (2006) Mol. Aspects Med. , vol.27 , pp. 126-139
    • Fleige, S.1    Pfaffl, M.W.2
  • 22
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • Huggett J., Dheda K., Bustin S., et al. Real-time RT-PCR normalisation; strategies and considerations. Genes Immun. 2005, 6:279-284.
    • (2005) Genes Immun. , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3
  • 23
    • 38349106695 scopus 로고    scopus 로고
    • Evaluation and validation of candidate endogenous control genes for real-time PCR studies of breast cancer
    • McNeill R.E., Miller N., Kerin M.J. Evaluation and validation of candidate endogenous control genes for real-time PCR studies of breast cancer. BMC Mol. Biol. 2007, 8:107.
    • (2007) BMC Mol. Biol. , vol.8 , pp. 107
    • McNeill, R.E.1    Miller, N.2    Kerin, M.J.3
  • 24
    • 0037135190 scopus 로고    scopus 로고
    • Transcriptional profiling in human epilepsy: expression array and single cell real-time PCR analysis reveal distinct cellular gene regulation
    • Becker A.J., Chen J., Paus S., et al. Transcriptional profiling in human epilepsy: expression array and single cell real-time PCR analysis reveal distinct cellular gene regulation. NeuroReport 2002, 13:1327-1333.
    • (2002) NeuroReport , vol.13 , pp. 1327-1333
    • Becker, A.J.1    Chen, J.2    Paus, S.3
  • 26
    • 33646148247 scopus 로고    scopus 로고
    • Correlation of transcriptome profile with electrical activity in temporal lobe epilepsy
    • Arion D., Sabatini M., Unger T., et al. Correlation of transcriptome profile with electrical activity in temporal lobe epilepsy. Neurobiol. Dis. 2006, 22:374-387.
    • (2006) Neurobiol. Dis. , vol.22 , pp. 374-387
    • Arion, D.1    Sabatini, M.2    Unger, T.3
  • 27
    • 0021770864 scopus 로고
    • Post-transcriptional regulation of glyceraldehyde-3-phosphate-dehydrogenase gene expression in rat tissues
    • Piechaczyk M., Blanchard J.M., Marty L., et al. Post-transcriptional regulation of glyceraldehyde-3-phosphate-dehydrogenase gene expression in rat tissues. Nucleic Acids Res. 1984, 12:6951-6963.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 6951-6963
    • Piechaczyk, M.1    Blanchard, J.M.2    Marty, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.