High-throughput sequencing to reveal genes involved in reproduction and development in Bactrocera dorsalis (Diptera: Tephritidae)

PLoS ONE

Volumn 7, Issue 5, 2012, Pages

  Zheng, Weiwei ^a   Peng, Tao ^a   He, Wei ^b   Zhang, Hongyu ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b Shanghai Hanyu Bio Lab   (China)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; INSULIN; TRANSCRIPTOME;

ANIMAL; ARTICLE; BACTROCERA DORSALIS; CONTIG MAPPING; DEVELOPMENTAL STAGE; DNA SEQUENCE; FLY; GENE EXPRESSION; GENE IDENTIFICATION; GENE NUMBER; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; HIGH THROUGHPUT SEQUENCING; INSECT DEVELOPMENT; LARVAL STAGE; NONHUMAN; PUPA (LIFE CYCLE STAGE); REPRODUCTION; SIGNAL TRANSDUCTION; EXPRESSED SEQUENCE TAG; FEMALE; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MALE; MOLECULAR GENETICS; REPRODUCIBILITY; TEPHRITIDAE;

BACTROCERA DORSALIS; DIPTERA; METAZOA; TEPHRITIDAE;

ANIMALS; EXPRESSED SEQUENCE TAGS; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENES, INSECT; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MALE; MOLECULAR SEQUENCE ANNOTATION; REPRODUCIBILITY OF RESULTS; REPRODUCTION; SEQUENCE ANALYSIS, DNA; SIGNAL TRANSDUCTION; TEPHRITIDAE; TRANSCRIPTOME;

EID: 84860538773     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036463     Document Type: Article

References (55)

1. Metcalf RL, Metcalf ER, (1992) Plant Kairomones in Insect Ecology and Control. Chapman and Hall, New York.
2. Chen SL, Dai SM, Lu KH, Chang C, (2008) Female-specific doublesex dsRNA interrupts yolk protein gene expression and reproductive ability in oriental fruit fly, Bactrocera dorsalis (Hendel). Insect Biochem Mol Biol 38: 155-165.
3. Suganya R, Chen SL, Lu KH, (2010) Target of rapamycin in the oriental fruit fly Bactrocera dorsalis (Hendel): its cloning and effect on yolk protein expression. Arch Insect Biochem Physiol 75: 45-56.
4. Gomulski LM, Dimopoulos G, Xi Z, Soares MB, Bonaldo MF, et al. (2008) Gene discovery in an invasive tephritid model pest species, the Mediterranean fruit fly, Ceratitis capitata. BMC Genomics 9: 243.
5. Schuster SC, (2008) Next-generation sequencing transforms today's biology. Nat Methods 5: 16-18.
6. Ansorge WJ, (2009) Next-generation DNA sequencing techniques. N Biotechnol 25: 195-203.
7. Hahn DA, Ragland GJ, Shoemaker DD, Denlinger DL, (2009) Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis. BMC Genomics 10: 234.
8. Vogel H, Altincicek B, Glockner G, Vilcinskas A, (2011) A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella. BMC Genomics 12: 308.
9. Ewen-Campen B, Shaner N, Panfilio KA, Suzuki Y, Roth S, et al. (2011) The maternal and early embryonic transcriptome of the milkweed bug Oncopeltus fasciatus. BMC Genomics 12: 61.
10. Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, et al. (2010) De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics 11: 400.
11. Shen GM, Dou W, Niu JZ, Jiang HB, Yang WJ, et al. (2011) Transcriptome analysis of the oriental fruit fly (Bactrocera dorsalis). PLoS One 6: e29127.
12. Dauwalder B, Tsujimoto S, Moss J, Mattox W, (2002) The Drosophila takeout gene is regulated by the somatic sex-determination pathway and affects male courtship behavior. Genes & Development 16: 2879-2892.
13. Toivonen JM, O'Dell KM, Petit N, Irvine SC, Knight GK, et al. (2001) Technical knockout, a Drosophila model of mitochondrial deafness. Genetics 159: 241-254.
14. Gaines P, Tompkins L, Woodard CT, Carlson JR, (2000) quick-to-court, a Drosophila mutant with elevated levels of sexual behavior, is defective in a predicted coiled-coil protein. Genetics 154: 1627-1637.
15. Beaver LM, Giebultowicz JM, (2004) Regulation of copulation duration by period and timeless in Drosophila melanogaster. Curr Biol 14: 1492-1497.
16. Kuniyoshi H, Baba K, Ueda R, Kondo S, Awano W, et al. (2002) lingerer, a Drosophila gene involved in initiation and termination of copulation, encodes a set of novel cytoplasmic proteins. Genetics 162: 1775-1789.
17. Greenspan RJ, Ferveur JF, (2000) Courtship in Drosophila. Annu Rev Genet 34: 205-232.
18. Lukacsovich T, Yuge K, Awano W, Asztalos Z, Kondo S, et al. (2003) The ken and barbie gene encoding a putative transcription factor with a BTB domain and three zinc finger motifs functions in terminalia development of Drosophila. Arch Insect Biochem Physiol 54: 77-94.
19. Carney GE, Taylor BJ, (2003) Logjam encodes a predicted EMP24/GP25 protein that is required for Drosophila oviposition behavior. Genetics 164: 173-186.
20. Herr DR, Fyrst H, Creason MB, Phan VH, Saba JD, et al. (2004) Characterization of the Drosophila sphingosine kinases and requirement for Sk2 in normal reproductive function. J Biol Chem 279: 12685-12694.
21. Carlsson P, Mahlapuu M, (2002) Forkhead transcription factors: key players in development and metabolism. Dev Biol 250: 1-23.
22. Coffer PJ, Burgering BM, (2004) Forkhead-box transcription factors and their role in the immune system. Nat Rev Immunol 4: 889-899.
23. Jonsson H, Peng SL, (2005) Forkhead transcription factors in immunology. Cell Mol Life Sci 62: 397-409.
24. Kaufmann E, Knochel W, (1996) Five years on the wings of fork head. Mech Dev 57: 3-20.
25. Lehmann OJ, Sowden JC, Carlsson P, Jordan T, Bhattacharya SS, (2003) Fox's in development and disease. Trends Genet 19: 339-344.
26. Hansen IA, Sieglaff DH, Munro JB, Shiao SH, Cruz J, et al. (2007) Forkhead transcription factors regulate mosquito reproduction. Insect Biochem Mol Biol 37: 985-997.
27. Yapici N, Kim YJ, Ribeiro C, Dickson BJ, (2008) A receptor that mediates the post-mating switch in Drosophila reproductive behaviour. Nature 451: 33-37.
28. Ito H, Fujitani K, Usui K, Shimizu-Nishikawa K, Tanaka S, et al. (1996) Sexual orientation in Drosophila is altered by the satori mutation in the sex-determination gene fruitless that encodes a zinc finger protein with a BTB domain. Proc Natl Acad Sci U S A 93: 9687-9692.
29. Ryner LC, Goodwin SF, Castrillon DH, Anand A, Villella A, et al. (1996) Control of male sexual behavior and sexual orientation in Drosophila by the fruitless gene. Cell 87: 1079-1089.
30. Anand A, Villella A, Ryner LC, Carlo T, Goodwin SF, et al. (2001) Molecular genetic dissection of the sex-specific and vital functions of the Drosophila melanogaster sex determination gene fruitless. Genetics 158: 1569-1595.
31. Lee G, Villella A, Taylor BJ, Hall JC, (2001) New reproductive anomalies in fruitless-mutant Drosophila males: extreme lengthening of mating durations and infertility correlated with defective serotonergic innervation of reproductive organs. J Neurobiol 47: 121-149.
32. Villella A, Gailey DA, Berwald B, Ohshima S, Barnes PT, et al. (1997) Extended reproductive roles of the fruitless gene in Drosophila melanogaster revealed by behavioral analysis of new fru mutants. Genetics 147: 1107-1130.
33. Gilbert LI, Granger NA, Roe RM, (2000) The juvenile hormones: historical facts and speculations on future research directions. Insect Biochem Mol Biol 30: 617-644.
34. Riddiford LM, Hiruma K, Zhou X, Nelson CA, (2003) Insights into the molecular basis of the hormonal control of molting and metamorphosis from Manduca sexta and Drosophila melanogaster. Insect Biochem Mol Biol 33: 1327-1338.
35. Riddiford LM, (2008) Juvenile hormone action: a 2007 perspective. J Insect Physiol 54: 895-901.
36. Zheng WW, Yang DT, Wang JX, Song QS, Gilbert LI, et al. (2010) Hsc70 binds to ultraspiracle resulting in the upregulation of 20-hydroxyecdsone-responsive genes in Helicoverpa armigera. Mol Cell Endocrinol 315: 282-291.
37. Liu Y, Sheng Z, Liu H, Wen D, He Q, et al. (2009) Juvenile hormone counteracts the bHLH-PAS transcription factors MET and GCE to prevent caspase-dependent programmed cell death in Drosophila. Development 136: 2015-2025.
38. Goberdhan DC, Paricio N, Goodman EC, Mlodzik M, Wilson C, (1999) Drosophila tumor suppressor PTEN controls cell size and number by antagonizing the Chico/PI3-kinase signaling pathway. Genes Dev 13: 3244-3258.
39. Leevers SJ, Weinkove D, MacDougall LK, Hafen E, Waterfield MD, (1996) The Drosophila phosphoinositide 3-kinase Dp110 promotes cell growth. EMBO J 15: 6584-6594.
40. Verdu J, Buratovich MA, Wilder EL, Birnbaum MJ, (1999) Cell-autonomous regulation of cell and organ growth in Drosophila by Akt/PKB. Nat Cell Biol 1: 500-506.
41. Weinkove D, Neufeld TP, Twardzik T, Waterfield MD, Leevers SJ, (1999) Regulation of imaginal disc cell size, cell number and organ size by Drosophila class I(A) phosphoinositide 3-kinase and its adaptor. Curr Biol 9: 1019-1029.
42. Huang H, Potter CJ, Tao W, Li DM, Brogiolo W, et al. (1999) PTEN affects cell size, cell proliferation and apoptosis during Drosophila eye development. Development 126: 5365-5372.
43. Gao X, Neufeld TP, Pan D, (2000) Drosophila PTEN regulates cell growth and proliferation through PI3K-dependent and-independent pathways. Dev Biol 221: 404-418.
44. Bickel PE, Scherer PE, Schnitzer JE, Oh P, Lisanti MP, et al. (1997) Flotillin and epidermal surface antigen define a new family of caveolae-associated integral membrane proteins. J Biol Chem 272: 13793-13802.
45. Baumann CA, Ribon V, Kanzaki M, Thurmond DC, Mora S, et al. (2000) CAP defines a second signalling pathway required for insulin-stimulated glucose transport. Nature 407: 202-207.
46. Mesce KA, Fahrbach SE, (2002) Integration of endocrine signals that regulate insect ecdysis. Front Neuroendocrinol 23: 179-199.
47. Lee CY, Wendel DP, Reid P, Lam G, Thummel CS, et al. (2000) E93 directs steroid-triggered programmed cell death in Drosophila. Mol Cell 6: 433-443.
48. Zhou X, Riddiford LM, (2002) Broad specifies pupal development and mediates the 'status quo' action of juvenile hormone on the pupal-adult transformation in Drosophila and Manduca. Development 129: 2259-2269.
49. Ng P, Wei CL, Sung WK, Chiu KP, Lipovich L, et al. (2005) Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat Methods 2: 105-111.
50. Li X, Zhang M, Zhang H, (2011) RNA interference of four genes in adult Bactrocera dorsalis by feeding their dsRNAs. PLoS One 6: e17788.
51. Chen ZZ, Xue CH, Zhu S, Zhou FF, Xenfeng BL, et al. (2005) GoPipe: streamlined gene ontology annotation for batch anonymous sequences with statistics. Progress in Biochemistry and Biophysics 32: 187-190.
52. Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
53. Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M, (2010) KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: D355-360.
54. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
55. Ren Q, Xu ZL, Wang XW, Zhao XF, Wang JX, (2009) Clip domain serine protease and its homolog respond to Vibrio challenge in Chinese white shrimp Fenneropenaeus chinensis. Fish Shellfish Immunol 26: 787-98.