-
1
-
-
78650510609
-
MTOR: From growth signal integration to cancer, diabetes and ageing
-
Zoncu, R., Efeyan, A. & Sabatini, D. M. mTOR: from growth signal integration to cancer, diabetes and ageing. Nature Rev. Mol. Cell Biol. 12, 21-35 (2011).
-
(2011)
Nature Rev. Mol. Cell Biol.
, vol.12
, pp. 21-35
-
-
Zoncu, R.1
Efeyan, A.2
Sabatini, D.M.3
-
2
-
-
65549145048
-
An ATP-competitive mammalian target of rapamycin inhibitor reveals rapamycin-resistant functions ofmTORC1
-
Thoreen, C. C. et al. An ATP-competitive mammalian target of rapamycin inhibitor reveals rapamycin-resistant functions ofmTORC1. J. Biol. Chem. 284, 8023-8032 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 8023-8032
-
-
Thoreen, C.C.1
-
3
-
-
4043171462
-
Upstream and downstream of mTOR
-
DOI 10.1101/gad.1212704
-
Hay, N. & Sonenberg, N. Upstream and downstream of mTOR. Genes Dev. 18, 1926-1945 (2004). (Pubitemid 39071573)
-
(2004)
Genes and Development
, vol.18
, Issue.16
, pp. 1926-1945
-
-
Hay, N.1
Sonenberg, N.2
-
4
-
-
59249097362
-
The TSC-mTOR pathway mediates translational activation of TOP mRNAs by insulin largely in a raptor-or rictor-independent manner
-
Patursky-Polischuk, I. et al. The TSC-mTOR pathway mediates translational activation of TOP mRNAs by insulin largely in a raptor-or rictor-independent manner. Mol. Cell. Biol. 29, 640-649 (2009).
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 640-649
-
-
Patursky-Polischuk, I.1
-
5
-
-
34547890999
-
Tuberous sclerosis complex proteins 1 and 2 control serum-dependent translation in a TOP-dependent and -independent manner
-
DOI 10.1128/MCB.02136-06
-
Bilanges, B. et al. Tuberous sclerosis complex proteins 1 and 2 control serumdependent translation in a TOP-dependent and-independent manner. Mol. Cell. Biol. 27, 5746-5764 (2007). (Pubitemid 47257831)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.16
, pp. 5746-5764
-
-
Bilanges, B.1
Argonza-Barrett, R.2
Kolesnichenko, M.3
Skinner, C.4
Nair, M.5
Chen, M.6
Stokoe, D.7
-
6
-
-
1642535431
-
AKT Activity Determines Sensitivity to Mammalian Target of Rapamycin (mTOR) Inhibitors by Regulating Cyclin D1 and c-myc Expression
-
DOI 10.1074/jbc.M309999200
-
Gera, J. F. et al. AKT activity determines sensitivity to mammalian target of rapamycin (mTOR) inhibitors by regulating cyclinD1and c-mycexpression. J. Biol. Chem. 279, 2737-2746 (2004). (Pubitemid 38114263)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.4
, pp. 2737-2746
-
-
Gera, J.F.1
Mellinghoff, I.K.2
Shi, Y.3
Rettig, M.B.4
Tran, C.5
Hsu, J.-H.6
Sawyers, C.L.7
Lichtenstein, A.K.8
-
7
-
-
0037151120
-
Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics
-
DOI 10.1074/jbc.M202014200
-
Grolleau, A. et al. Global and specific translational control by rapamycin in T cells uncovered by microarrays and proteomics. J. Biol. Chem. 277, 22175-22184 (2002). (Pubitemid 34967182)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.25
, pp. 22175-22184
-
-
Grolleau, A.1
Bowman, J.2
Pradet-Balade, B.3
Puravs, E.4
Hanash, S.5
Garcia-Sanz, J.A.6
Beretta, L.7
-
8
-
-
62549134121
-
Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
-
Ingolia, N. T., Ghaemmaghami, S., Newman, J. R. & Weissman, J. S. Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science 324, 218-223 (2009).
-
(2009)
Science
, vol.324
, pp. 218-223
-
-
Ingolia, N.T.1
Ghaemmaghami, S.2
Newman, J.R.3
Weissman, J.S.4
-
9
-
-
0024560651
-
Identification of the long ubiquitin extension as ribosomal protein S27a
-
DOI 10.1038/338438a0
-
Redman, K. L. & Rechsteiner, M. Identification of the long ubiquitin extension as ribosomal protein S27a. Nature 338, 438-440 (1989). (Pubitemid 19089327)
-
(1989)
Nature
, vol.338
, Issue.6214
, pp. 438-440
-
-
Redman, K.L.1
Rechtsteiner, M.2
-
10
-
-
75549090211
-
IRESite - A tool for the examination of viral and cellular internal ribosome entry sites
-
Mokrejs, M. et al. IRESite-a tool for the examination of viral and cellular internal ribosome entry sites. Nucleic Acids Res. 38, D131-D136 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Mokrejs, M.1
-
11
-
-
29144444289
-
A second look at cellular mRNA sequences said to function as internal ribosome entry sites
-
DOI 10.1093/nar/gki958
-
Kozak, M. A second look at cellular mRNA sequences said to function as internal ribosome entry sites. Nucleic Acids Res. 33, 6593-6602 (2005). (Pubitemid 41806424)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.20
, pp. 6593-6602
-
-
Kozak, M.1
-
12
-
-
78651468719
-
Cap-assisted internal initiation of translation of histone H4
-
Martin, F. et al. Cap-assisted internal initiation of translation of histone H4. Mol. Cell 41, 197-209 (2011).
-
(2011)
Mol. Cell
, vol.41
, pp. 197-209
-
-
Martin, F.1
-
13
-
-
0033761629
-
Synthesis of the translational apparatus is regulated at the translational level
-
Meyuhas, O. Synthesis of the translational apparatus is regulated at the translational level. Eur. J. Biochem. 267, 6321-6330 (2000).
-
(2000)
Eur. J. Biochem.
, vol.267
, pp. 6321-6330
-
-
Meyuhas, O.1
-
14
-
-
2342489456
-
EIF-4E expression and its role in malignancies and metastases
-
DOI 10.1038/sj.onc.1207545
-
De Benedetti, A. & Graff, J. R. eIF-4E expression and its role in malignancies and metastases. Oncogene 23, 3189-3199 (2004). (Pubitemid 38638830)
-
(2004)
Oncogene
, vol.23
, Issue.18
, pp. 3189-3199
-
-
De Benedetti, A.1
Graff, J.R.2
-
15
-
-
15744386891
-
Cyclin D1 and c-myc internal ribosome entry site (IRES)-dependent translation is regulated by AKT activity and enhanced by rapamycin through a p38 MAPK- and ERK-dependent pathway
-
DOI 10.1074/jbc.M407874200
-
Shi, Y., Sharma, A., Wu, H., Lichtenstein, A. & Gera, J. Cyclin D1 and c-myc internal ribosome entry site (IRES)-dependent translation is regulated by AKT activity and enhanced by rapamycin through a p38 MAPK-and ERK-dependent pathway. J. Biol. Chem. 280, 10964-10973 (2005). (Pubitemid 40418398)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.12
, pp. 10964-10973
-
-
Shi, Y.1
Sharma, A.2
Wu, H.3
Lichtenstein, A.4
Gera, J.5
-
16
-
-
77952967459
-
MTORC1-mediated cell proliferation, but not cell growth, controlled by the 4E-BPs
-
Dowling, R. J. et al. mTORC1-mediated cell proliferation, but not cell growth, controlled by the 4E-BPs. Science 328, 1172-1176 (2010).
-
(2010)
Science
, vol.328
, pp. 1172-1176
-
-
Dowling, R.J.1
-
17
-
-
0028207001
-
Rapamycin selectively represses translation of the "polypyrimidine tract" mRNA family
-
Jefferies, H. B., Reinhard, C., Kozma, S. C. & Thomas, G. Rapamycin selectively represses translation of the "polypyrimidine tract" mRNA family. Proc. Natl Acad. Sci. USA 91, 4441-4445 (1994).
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 4441-4445
-
-
Jefferies, H.B.1
Reinhard, C.2
Kozma, S.C.3
Thomas, G.4
-
18
-
-
50649084799
-
All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 59-terminal oligopyrimidine (TOP) mRNAs
-
Iadevaia, V., Caldarola, S., Tino, E., Amaldi, F. & Loreni, F. All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 59-terminal oligopyrimidine (TOP) mRNAs. RNA 14, 1730-1736 (2008).
-
(2008)
RNA
, vol.14
, pp. 1730-1736
-
-
Iadevaia, V.1
Caldarola, S.2
Tino, E.3
Amaldi, F.4
Loreni, F.5
-
19
-
-
75549091613
-
DBTSS provides a tissue specific dynamic view of transcription start sites
-
Yamashita, R., Wakaguri, H., Sugano, S., Suzuki, Y. & Nakai, K. DBTSS provides a tissue specific dynamic view of transcription start sites. Nucleic Acids Res. 38, D98-D104 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Yamashita, R.1
Wakaguri, H.2
Sugano, S.3
Suzuki, Y.4
Nakai, K.5
-
20
-
-
34547587877
-
Cell size and invasion in TGF-β-induced epithelial to mesenchymal transition is regulated by activation of the mTOR pathway
-
DOI 10.1083/jcb.200611146
-
Lamouille, S. & Derynck, R. Cell size and invasion in TGF-b-induced epithelial to mesenchymal transition is regulated by activation of the mTOR pathway. J. Cell Biol. 178, 437-451 (2007). (Pubitemid 47196152)
-
(2007)
Journal of Cell Biology
, vol.178
, Issue.3
, pp. 437-451
-
-
Lamouille, S.1
Derynck, R.2
-
21
-
-
70450198396
-
Epithelial-mesenchymal transitions in development and disease
-
Thiery, J. P., Acloque, H., Huang, R. Y. & Nieto, M. A. Epithelial-mesenchymal transitions in development and disease. Cell 139, 871-890 (2009).
-
(2009)
Cell
, vol.139
, pp. 871-890
-
-
Thiery, J.P.1
Acloque, H.2
Huang, R.Y.3
Nieto, M.A.4
-
22
-
-
0030915898
-
Rapamycin suppresses 5'TOP mRNA translation through inhibition of p70(s6k)
-
DOI 10.1093/emboj/16.12.3693
-
Jefferies, H. B. et al. Rapamycin suppresses 59TOP mRNA translation through inhibition of p70s6k. EMBO J. 16, 3693-3704 (1997). (Pubitemid 27250062)
-
(1997)
EMBO Journal
, vol.16
, Issue.12
, pp. 3693-3704
-
-
Jefferies, H.B.J.1
Fumagalli, S.2
Dennis, P.B.3
Reinhard, C.4
Pearson, R.B.5
Thomas, G.6
-
23
-
-
11144356304
-
-/- Mice Exhibit Perinatal Lethality and Rapamycin-Sensitive 5β-Terminal Oligopyrimidine mRNA Translation and Reveal a Mitogen-Activated Protein Kinase-Dependent S6 Kinase Pathway
-
DOI 10.1128/MCB.24.8.3112-3124.2004
-
Pende, M. et al. S6K12/2/S6K22/2 mice exhibit perinatal lethality and rapamycinsensitive 59-terminal oligopyrimidine mRNA translation and reveal a mitogenactivated protein kinase-dependent S6 kinase pathway. Mol. Cell. Biol. 24, 3112-3124 (2004). (Pubitemid 38452057)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.8
, pp. 3112-3124
-
-
Pende, M.1
Um, S.H.2
Mieulet, V.3
Sticker, M.4
Goss, V.L.5
Mestan, J.6
Mueller, M.7
Fumagalli, S.8
Kozma, S.C.9
Thomas, G.10
-
24
-
-
56249147509
-
Rapamycin differentially inhibits S6Ks and 4E-BP1 to mediate cell-type-specific repression of mRNA translation
-
Choo, A. Y., Yoon, S. O., Kim, S. G., Roux, P. P. & Blenis, J. Rapamycin differentially inhibits S6Ks and 4E-BP1 to mediate cell-type-specific repression of mRNA translation. Proc. Natl Acad. Sci. USA 105, 17414-17419 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 17414-17419
-
-
Choo, A.Y.1
Yoon, S.O.2
Kim, S.G.3
Roux, P.P.4
Blenis, J.5
-
25
-
-
61349141302
-
Active-site inhibitors of mTOR target rapamycin-resistant outputs of mTORC1 and mTORC2
-
Feldman, M. E. et al. Active-site inhibitors of mTOR target rapamycin-resistant outputs of mTORC1 and mTORC2. PLoS Biol. 7, e38 (2009).
-
(2009)
PLoS Biol.
, vol.7
-
-
Feldman, M.E.1
-
26
-
-
0032541425
-
Cooperative modulation by eIF4G of eIF4E-binding to the mRNA 5' cap in yeast involves a site partially shared by p20
-
DOI 10.1093/emboj/17.16.4798
-
Ptushkina, M. et al. Cooperative modulation by eIF4G of eIF4E-binding to the mRNA 59 cap in yeast involves a site partially shared by p20. EMBO J. 17, 4798-4808 (1998). (Pubitemid 28377180)
-
(1998)
EMBO Journal
, vol.17
, Issue.16
, pp. 4798-4808
-
-
Ptushkina, M.1
Von Der Haar, T.2
Vasilescu, S.3
Frank, R.4
Birkenhager, R.5
McCarthy, J.E.G.6
-
27
-
-
33646124490
-
MTOR-dependent stimulationof the associationof elF4Gand elF3 by insulin
-
Harris, T. E. et al.mTOR-dependent stimulationof the associationof elF4Gand elF3 by insulin. EMBO J 25, 1659-1668 (2006).
-
(2006)
EMBO J
, vol.25
, pp. 1659-1668
-
-
Harris, T.E.1
-
28
-
-
33748354044
-
P97/DAP5 is a ribosome-associated factor that facilitates protein synthesis and cell proliferation by modulating the synthesis of cell cycle proteins
-
DOI 10.1038/sj.emboj.7601268, PII 7601268
-
Lee, S. H. & McCormick, F. p97/DAP5 is a ribosome-associated factor that facilitates protein synthesis and cell proliferation by modulating the synthesis of cell cycle proteins. EMBO J. 25, 4008-4019 (2006). (Pubitemid 44338743)
-
(2006)
EMBO Journal
, vol.25
, Issue.17
, pp. 4008-4019
-
-
Lee, S.H.1
McCormick, F.2
-
29
-
-
42449138319
-
EIF4GI links nutrient sensing by mTOR to cell proliferation and inhibition of autophagy
-
DOI 10.1083/jcb.200710215
-
Ramirez-Valle, F., Braunstein, S., Zavadil, J., Formenti, S. C.&Schneider, R. J. eIF4GI links nutrient sensing by mTOR to cell proliferation and inhibition of autophagy. J. Cell Biol. 181, 293-307 (2008). (Pubitemid 351574554)
-
(2008)
Journal of Cell Biology
, vol.181
, Issue.2
, pp. 293-307
-
-
Ramirez-Valle, F.1
Braunstein, S.2
Zavadil, J.3
Formenti, S.C.4
Schneider, R.J.5
-
30
-
-
77957903550
-
Discovery of 1-(4-(4-propionylpiperazin-1-yl)-3-(trifluoromethyl)phenyl)- 9-(quinolin-3-yl)benzo[h][1,6]naphthyridin-2(1H)-one as a highly potent, selective mammalian target of rapamycin (mTOR) inhibitor for the treatment of cancer
-
Liu, Q. et al. Discovery of 1-(4-(4-propionylpiperazin-1-yl)-3- (trifluoromethyl)phenyl)-9-(quinolin-3-yl)benzo[h][1,6]naphthyridin-2(1H)-one as a highly potent, selective mammalian target of rapamycin (mTOR) inhibitor for the treatment of cancer. J. Med. Chem. 53, 7146-7155 (2010).
-
(2010)
J. Med. Chem.
, vol.53
, pp. 7146-7155
-
-
Liu, Q.1
-
31
-
-
33646033137
-
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen
-
Moffat, J. et al. A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen. Cell 124, 1283-1298 (2006).
-
(2006)
Cell
, vol.124
, pp. 1283-1298
-
-
Moffat, J.1
-
32
-
-
21244458013
-
Structure of S6 kinase 1 determines whether raptor-mTOR or rictor-mTOR phosphorylates its hydrophobic motif site
-
DOI 10.1074/jbc.C500125200
-
Ali, S. M. & Sabatini, D. M. Structure of S6 kinase 1 determines whether raptormTOR or rictor-mTOR phosphorylates its hydrophobic motif site. J. Biol. Chem. 280, 19445-19448 (2005). (Pubitemid 41379463)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.20
, pp. 19445-19448
-
-
Ali, S.M.1
Sabatini, D.M.2
-
33
-
-
0001376559
-
Contact inhibition, macromolecular synthesis, and polyribosomes in cultured human diploid fibroblasts
-
Levine, E. M., Becker, Y., Boone, C. W. & Eagle, H. Contact inhibition, macromolecular synthesis, and polyribosomes in cultured human diploid fibroblasts. Proc. Natl Acad. Sci. USA 53, 350-356 (1965).
-
(1965)
Proc. Natl Acad. Sci. USA
, vol.53
, pp. 350-356
-
-
Levine, E.M.1
Becker, Y.2
Boone, C.W.3
Eagle, H.4
-
34
-
-
79953177468
-
Aligning short sequencing reads with Bowtie
-
Chapter 11 Unit 11.7
-
Langmead, B. Aligning short sequencing reads with Bowtie. Curr. Protoc. Bioinformatics Chapter 11, Unit 11.7 (2010).
-
(2010)
Curr. Protoc. Bioinformatics
-
-
Langmead, B.1
-
35
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo, H., Ingolia, N. T., Weissman, J. S. & Bartel, D. P. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466, 835-840 (2010).
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
36
-
-
46249106990
-
Mapping and quantifyingmammalian transcriptomesbyRNA-Seq
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifyingmammalian transcriptomesbyRNA-Seq. NatureMethods 5, 621-628 (2008).
-
(2008)
Nature Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
37
-
-
23144440350
-
DINAMelt web server for nucleic acid melting prediction
-
DOI 10.1093/nar/gki591
-
Markham, N. R. & Zuker, M. DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res. 33, W577-W581 (2005). (Pubitemid 44529988)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Markham, N.R.1
Zuker, M.2
-
38
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang, D. WSherman, B. TLempicki, R. A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocols 4, 44-57 (2009).
-
(2009)
Nature Protocols
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.2
Tlempicki, R.A.3
-
39
-
-
58549112996
-
Bioinformatics enrichment tools: Paths toward the comprehensive functional analysis of large gene lists
-
Huang, D. W. Sherman, B. T. & Lempicki, R. A. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res. 37, 1-13 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
|