Synchrotron infrared measurements of protein phosphorylation in living single PC12 cells during neuronal differentiation

Analytical Chemistry

Volumn 84, Issue 9, 2012, Pages 4118-4125

  Chen, Liang ^a   Holman, Hoi Ying N ^a   Hao, Zhao ^a   Bechtel, Hans A ^a   Martin, Michael C ^a   Wu, Chengbiao ^b   Chu, Steven ^c,d,e  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e U S DEPARTMENT OF ENERGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL TECHNIQUES; CELLULAR ACTIVITIES; CELLULAR SIGNALING; FLUORESCENCE MARKERS; FOURIER; INFRARED MEASUREMENTS; LABEL FREE; MAMMALIAN CELLS; MOLECULAR CHANGES; NERVE GROWTH FACTOR; NEURONAL DIFFERENTIATION; PC12 CELLS; POST-TRANSLATIONAL MODIFICATIONS; PROTEIN PHOSPHORYLATION; REAL TIME MONITORING; RESPONSE PROCESS; SINGLE CELLS; SPECTRAL FEATURE; SPECTROMICROSCOPY; TEMPORAL VARIATION; VIBRATIONAL SIGNATURE;

ANTIBODIES; CELLS; CHEMICAL BONDS; CYTOLOGY; INFRARED SPECTROSCOPY;

PHOSPHORYLATION;

NERVE GROWTH FACTOR; PROTEIN;

ANIMAL; ARTICLE; CELL DIFFERENTIATION; CELL STRAIN; CELL SURVIVAL; CYTOLOGY; EVALUATION; INFRARED SPECTROSCOPY; INSTRUMENTATION; METABOLISM; NERVE CELL; PHOSPHORYLATION; RAT; SENSITIVITY AND SPECIFICITY; SYNCHROTRON;

ANIMALS; CELL DIFFERENTIATION; CELL SURVIVAL; NERVE GROWTH FACTORS; NEURONS; PC12 CELLS; PHOSPHORYLATION; PROTEINS; RATS; SENSITIVITY AND SPECIFICITY; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SYNCHROTRONS;

EID: 84860443719     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac300308x     Document Type: Article

References (54)

1. Manning, G.; Whyte, D. B.; Martinez, R.; Hunter, T.; Sudarsanam, S. Science 2002, 298 (5600) 1912-1934
2. Manning, G.; Plowman, G. D.; Hunter, T.; Sudarsanam, S. Trends Biochem. Sci. 2002, 27 (10) 514-520
3. Watson, F. L.; Heerssen, H. M.; Bhattacharyya, A.; Klesse, L.; Lin, M. Z.; Segal, R. A. Nat. Neurosci. 2001, 4 (10) 981-988
4. Liu, L.; Cundiff, P.; Abel, G.; Wang, Y.; Faigle, R.; Sakagami, H.; Xu, M.; Xia, Z. Proc. Natl. Acad. Sci. U.S.A. 2006, 103 (25) 9697-9702
5. Ross, A. H.; Baltimore, D.; Eisen, H. N. Nature 1981, 294 (5842) 654-656
6. Ciaccio, M. F.; Wagner, J. P.; Chuu, C. P.; Lauffenburger, D. A.; Jones, R. B. Nat. Methods 2010, 7 (2) 148-155
7. Stukenberg, P. T.; Fuller, B. G.; Lampson, M. A.; Foley, E. A.; Rosasco-Nitcher, S.; Le, K. V.; Tobelmann, P.; Brautigan, D. L.; Kapoor, T. M. Nature 2008, 453 (7198) 1132-U14
8. Randriamampita, C.; Mouchacca, P.; Malissen, B.; Marguet, D.; Trautmann, A.; Lellouch, A. C. PLoS One 2008, 3, 1
9. Zhang, J.; Hupfeld, C. J.; Taylor, S. S.; Olefsky, J. M.; Tsien, R. Y. Nature 2005, 437 (7058) 569-573
10. Matsuda, M.; Aoki, K.; Kiyokawa, E.; Nakamura, T. Phil. Trans. R. Soc. B: Biol. Sci. 2008, 363 (1500) 2143-2151
11. Shachaf, C. M.; Elchuri, S. V.; Koh, A. L.; Zhu, J.; Nguyen, L. N.; Mitchell, D. J.; Zhang, J. W.; Swartz, K. B.; Sun, L.; Chan, S.; Sinclair, R.; Nolan, G. P. PLoS One 2009, 4, 4
12. Kneipp, K.; Haka, A. S.; Kneipp, H.; Badizadegan, K.; Yoshizawa, N.; Boone, C.; Shafer-Peltier, K. E.; Motz, J. T.; Dasari, R. R.; Feld, M. S. Appl. Spectrosc. 2002, 56 (2) 150-154
13. Jell, G.; Swain, R.; Stevens, M. M. Raman Spectroscopy: A Tool for Tissue Engineering. In Emerging Raman Applications and Techniques in Biomedical and Pharmaceutical Fields; Matousek, P.; Morris, M. D., Eds.; Springer Science+Business Media: Berlin, Heildelberg, Germany, 2010; pp 419-437.
14. Huang, Y. S.; Karashima, T.; Yamamoto, M.; Hamaguchi, H. O. Biochemistry 2005, 44 (30) 10009-10019
15. van Manen, H. J.; Lenferink, A.; Otto, C. Anal. Chem. 2008, 80 (24) 9576-9582
16. Holman, H. Y. N.; Martin, M. C.; McKinney, W. R. J. Biol. Phys. 2003, 29 (2-3) 275-286
17. Holman, H. Y. N.; Bechtel, H. A.; Hao, Z.; Martin, M. C. Anal. Chem. 2010, 82 (21) 8757-8765
18. Sanchez-Ruiz, J. M.; Martinez-Carrion, M. Biochemistry 1988, 27 (9) 3338-3342
19. Barth, A.; Mantele, W. Biophys. J. 1998, 75 (1) 538-44
20. Katsunori, I.; Sachiko, S. Y.; Kunihiro, C.; Kunio, A. In FT-IR Analysis of Phosphorylated Protein; Michel, D. F.; Patrick, M., Eds.; SPIE: Bellingham, WA, 2004; pp 17-21.
21. Miller, L. M.; Dumas, P. Biochim. Biophys. Acta 2006, 1758 (7) 846-857
22. Diem, M.; Romeo, M.; Matthaus, C.; Miljkovic, M.; Miller, L.; Lasch, P. Infrared Phys. Technol. 2004, 45 (5-6) 331-338
23. Miljkovic, M.; Romeo, M.; Matthaus, C.; Diem, M. Biopolymers 2004, 74 (1-2) 172-175
24. Kuimova, M. K.; Chan, K. L.; Kazarian, S. G. Appl. Spectrosc. 2009, 63 (2) 164-171
25. Nasse, M. J.; Walsh, M. J.; Mattson, E. C.; Reininger, R.; Kajdacsy-Balla, A.; Macias, V.; Bhargava, R.; Hirschmugl, C. J. Nat. Methods 2011, 8 (5) 413-416
26. Dumas, P.; Sockalingum, G. D.; Sule-Suso, J. Trends Biotechnol. 2007, 25 (1) 40-44
27. Holman, H. Y.; Wozei, E.; Lin, Z.; Comolli, L. R.; Ball, D. A.; Borglin, S.; Fields, M. W.; Hazen, T. C.; Downing, K. H. Proc. Natl. Acad. Sci. U.S.A. 2009, 106 (31) 12599-12604
28. Quaroni, L.; Zlateva, T.; Normand, E. Anal. Chem. 2011, 83 (19) 7371-7380
29. Fujita, K.; Lazarovici, P.; Guroff, G. Environ. Health Perspect. 1989, 80, 127-142
30. Gomez, N.; Cohen, P. Nature 1991, 353 (6340) 170-173
31. Chang, J. H.; Mellon, E.; Schanen, N. C.; Twiss, J. L. J. Biol. Chem. 2003, 278 (44) 42877-42885
32. Van Buskirk, R. G.; Gabriels, J.; Wagner, J. In Vitro Cell. Dev. Biol. 1988, 24 (5) 451-6
33. Jullien, J.; Guili, V.; Derrington, E. A.; Darlix, J. L.; Reichardt, L. F.; Rudkin, B. B. J. Biol. Chem. 2003, 278 (10) 8706-8716
34. Wartewig, S., IR and Raman Spectroscopy:Fundamental Processing; Wiley-VCH: Weinheim, Germany, 2003.
35. Mohlenhoff, B.; Romeo, M.; Diem, M.; Wood, B. R. Biophys. J. 2005, 88 (5) 3635-3640
36. Bassan, P.; Kohler, A.; Martens, H.; Lee, J.; Byrne, H. J.; Dumas, P.; Gazi, E.; Brown, M.; Clarke, N.; Gardner, P. Analyst 2010, 135 (2) 268-277
37. Bassan, P.; Byrne, H. J.; Bonnier, F.; Lee, J.; Dumas, P.; Gardner, P. Analyst 2009, 134 (8) 1586-1593
38. Filik, J.; Frogley, M. D.; Pijanka, J. K.; Wehbe, K.; Cinque, G. Analyst 2012, 137 (4) 853-861
39. Esbensen, K. H., Multivariate Data Analysis in Practice, 5 th ed.; CAMO Process AS: Woodbridge, NJ, 2004.
40. Martin, F. L.; German, M. J.; Wit, E.; Fearn, T.; Ragavan, N.; Pollock, H. M. J. Comput. Biol. 2007, 14 (9) 1176-1184
41. Holman, H. Y.; Martin, M. C.; Blakely, E. A.; Bjornstad, K.; McKinney, W. R. Biopolymers 2000, 57 (6) 329-335
42. Wong, P. T. T.; Lacelle, S.; Fung, M. F. K.; Senterman, M.; Mikhael, N. Z. Biospectroscopy 1995, 1 (5) 357-364
43. Margolis, R. K.; Salton, S. R. J.; Margolis, R. U. J. Biol. Chem. 1983, 258 (7) 4110-4117
44. Tobin, M. J.; Chesters, M. A.; Chalmers, J. M.; Rutten, F. J.; Fisher, S. E.; Symonds, I. M.; Hitchcock, A.; Allibone, R.; Dias-Gunasekara, S. Faraday Discuss. 2004, 126, 27-39; discussion 77-92
45. Parker, F. S. Applications of Infrared Spectroscopy in Biochemistry, Biology, And Medicine. Plenum Press: New York, 1971; p xiv, 601.
46. Maziak, D. E.; Do, M. T.; Shamji, F. M.; Sundaresan, S. R.; Perkins, D. G.; Wong, P. T. Cancer Detect. Prev. 2007, 31 (3) 244-253
47. Jamin, N.; Miller, L.; Moncuit, J.; Fridman, W. H.; Dumas, P.; Teillaud, J. L. Biopolymers 2003, 72 (5) 366-373
48. Lasch, P.; Pacifico, A.; Diem, M. Biopolymers 2002, 67 (4-5) 335-338
49. Wong, P. T.; Wong, R. K.; Caputo, T. A.; Godwin, T. A.; Rigas, B. Proc. Natl. Acad. Sci. U.S.A. 1991, 88 (24) 10988-10992
50. Bonda, M.; Perrin, V.; Vileno, B.; Runne, H.; Kretlow, A.; Forro, L.; Luthi-Carter, R.; Miller, L. M.; Jeney, S. Anal. Chem. 2011, 83, 7712-7720
51. Holman, H. Y.; Miles, R.; Hao, Z.; Wozei, E.; Anderson, L. M.; Yang, H. Anal. Chem. 2009, 81 (20) 8564-8570
52. Liu, M. J.; Wang, Z.; Wu, R. C.; Sun, S. Q.; Wu, Q. Y. Leukemia 2003, 17 (8) 1670-1674
53. Rigas, B.; Wong, P. T. Cancer Res. 1992, 52 (1) 84-88
54. Hempstead, B. L.; Rabin, S. J.; Kaplan, L.; Reid, S.; Parada, L. F.; Kaplan, D. R. Neuron 1992, 9 (5) 883-896