Real-time chemical imaging of bacterial activity in biofilms using open-channel microfluidics and synchrotron FTIR spectromicroscopy

Analytical Chemistry

Volumn 81, Issue 20, 2009, Pages 8564-8570

  Holman, Hoi Ying N ^a   Miles, Robin ^b   Hao, Zhao ^a   Wozei, Eleanor ^a   Anderson, L Meadow ^c   Yang, Haw ^c  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^b LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ACTIVITY; BACTERIAL BIOFILM; BIOFILM STRUCTURE; BIOFILM SYSTEMS; CHEMICAL IMAGING; FLOWTHROUGH; FOURIER TRANSFORM INFRARED; FTIR; FTIR MEASUREMENTS; HIGH QUALITY; HIGH SPATIAL RESOLUTION; IMAGING VOLUME; IMMEDIATE ENVIRONMENT; LABEL FREE; LIVING CELL; MICRO FLUIDIC SYSTEM; MICROBIAL SYSTEM; MICROFLUIDIC PLATFORMS; OPEN CHANNELS; SPATIAL RESOLUTION; SPECTROMICROSCOPY; SYNCHROTRON FTIR; VIBRATIONAL SIGNATURE;

BACTERIOLOGY; BIOFILMS; BIOFILTERS; BOND STRENGTH (CHEMICAL); FOURIER TRANSFORM INFRARED SPECTROSCOPY; IMAGE RESOLUTION; OPEN CHANNEL FLOW; SYNCHROTRONS; WATER ABSORPTION;

MICROFLUIDICS;

WATER;

ARTICLE; BIOFILM; CHEMICAL BOND; DYNAMICS; GEOMETRY; IMAGING; INFRARED SPECTROSCOPY; MICROBIAL ACTIVITY; MICROFLUIDICS; MOLECULE; NONHUMAN; SENSITIVITY ANALYSIS; SYNCHROTRON; VIBRATION; WATER ABSORPTION;

ABSORPTION; ANTI-BACTERIAL AGENTS; BACTERIA; BACTERIAL ADHESION; BIOFILMS; DNA, BACTERIAL; ESCHERICHIA COLI; GLYCOCALYX; MICROFLUIDIC ANALYTICAL TECHNIQUES; MITOMYCIN; MOLECULAR IMAGING; SPECTROSCOPY, FOURIER TRANSFORM INFRARED; SYNCHROTRONS; TIME FACTORS; WATER;

EID: 70449857579     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac9015424     Document Type: Article

References (54)

1. Moller, S.; Pedersen, A. R.; Poulsen, L. K.; Arvin, E.; Molin, S. Appl. Environ. Microbiol. 1996, 62, 4632-4640.
2. Costerton, J. W.; Stewart, P. S.; Greenberg, E. P. Science 1999, 284, 1318-1322.
3. Whitchurch, C. B.; Tolker-Nielsen, T.; Ragas, P. C.; Mattick, J. S. Science 2002, 295, 1487-1487.
4. Shapiro, J. A. Annu. Rev. Microbiol. 1998, 52, 81-104.
5. Davies, D. G.; Parsek, M. R.; Pearson, J. P.; Iglewski, B. H.; Costerton, J. W.; Greenberg, E. P. Science 1998, 280, 295-298.
6. De Kievit, T. R.; Gillis, R.;Marx, S.; Brown, C.; Iglewski, B. H. Appl. Environ. Microb. 2001, 67, 1865-1873.
7. Stewart, P. S.; Franklin, M. J. Nat. Rev. Microbiol. 2008, 6, 199-210 (and the references cited therein).
8. Drenkard, E.; Ausubel, F. M. Nature 2002, 416, 740-743.
9. O'Toole, G. A.; Stewart, P. S. Nat. Biotechnol. 2005, 23, 1378-1379.
10. Majors, P. D.; McLean, J. S.; Pinchuk, G. E.; Fredrickson, J. K.; Gorby, Y. A.; Minard, K. R.; Wind, R. A. J. Microbiol. Meth. 2005, 62, 337-344.
11. Suci, P. A.; Geesey, G. G.; Tyler, B. J. J. Microbiol. Methods 2001, 46, 193-208.
12. Ivleva, N. P.; Wagner, M.; Horn, H.; Niessner, R.; Haisch, C. Anal. Bioanal. Chem. 2009, 393, 197-206.
13. Wagner, M.; Ivleva, N. P.; Haisch, C.; Niessner, R.; Horn, H. Water Res. 2009, 43, 63-76.
14. Stephens, D. J.; Allan, V. J. Science 2003, 300, 82-86.
15. Hockberger, P. E.; Skimina, T. A.; Centonze, V. E.; Lavin, C.; Chu, S.; Dadras, S.; Reddy, J. K.; White, J. G. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 6255-6260.
16. Konig, K.; Becker, T. W.; Fischer, P.; Riemann, I.; Halbhuber, K. J. Opt. Lett. 1999, 24, 113-115.
17. Squirrell, J. M.; Wokosin, D. L.; White, J. G.; Bavister, B. D. Nat. Biotechnol. 1999, 17, 763-767.
18. Kang, L. L.; Huang, Y. X.; Luo, M. Spectrosc. Spectral Anal. 2008, 28, 2343-2347.
19. Holman, H.-Y. N.; Martin, M. C. In Advances in Agronomy; Sparks, D., Ed.; Elsevier: New York, 2006; Vol. 90, pp 79-127.
20. Holman, H.-Y. N.; Wozei, E.; Lin, Z.; Comolli, L. R.; Ball, D. A.; Borglin, S.; Fields, M. W.; Hazen, T. C.; Downing, K. H. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 12599-12604.
21. Holman, H.-Y. N.; Bjornstad, K. A.; McNamara, M. P.; Martin, M. C.; McKinney, W. R.; Blakely, E. A. J. Biomed. Opt. 2002, 7, 417-424.
22. Nivens, D. E.; Chambers, J. Q.; Anderson, T. R.; Tunlid, A.; Smit, J.; White, D. C. J. Microbiol. Methods 1993, 17, 199-213.
23. Jiang, W.; Saxena, A.; Song, B.; Ward, B. B.; Beveridge, T. J.; Myneni, S. C. Langmuir 2004, 20, 11433-11442.
24. Moss, D. A.; Keese, M.; Pepperkok, R. Vib. Spectrosc. 2005, 38, 185-191.
25. Kaun, N.; Kulka, S.; Frank, J.; Schade, U.; Vellekoop, M. J.; Harasek, M.; Lendl, B. Analyst 2006, 131, 489-494.
26. Griffiths, P. R.; de Haseth, J. A. Fourier Transform Infrared Spectrometry, 2nd ed.; Wiley-Interscience: Hoboken, NJ, 2007.
27. Tomasz, M.; Palom, Y. Pharmacol. Ther. 1997, 76, 73-87.
28. Costerton, J. W.; Cheng, K. J.; Geesey, G. G.; Ladd, T. I.; Nickel, J. C.; Dasgupta, M.; Marrie, T. J. Annu. Rev. Microbiol. 1987, 41, 435-464.
29. Vollmer, A. C.; Belkin, S.; Smulski, D. R.; Vandyk, T. K.; Larossa, R. A. Appl. Environ. Microbiol. 1997, 63, 2566-2571.
30. Kuzmenko, A. B. Rev. Sci. Instrum. 2005, 76, 1-10.
31. Gallagher, N. B.; Blake, T. A.; Gassman, P. L. J. Chemom. 2005, 19, 271-281.
32. Helland, I. S.; Naes, T.; Isaksson, T. Chemom. Intell. Lab. Syst. 1995, 29, 233-241.
33. Romeo, M.; Mohlenhoff, B.; Diem, M. Vib. Spectrosc. 2006, 42, 9-14.
34. Zeroual, W.; Choisy, C.; Doglia, S. M.; Bobichon, H.; Angiboust, J. F.; Manfait, M. Biochim. Biophys. Acta (Mol. Cell Res.) 1994, 1222, 171-178.
35. Iyer, V. N.; Szybalski, W. Science 1964, 145, 55-58.
36. Portugal, J.; Sanchezbaeza, F. J. Biochem. J. 1995, 306, 185-190.
37. Debeer, D.; Stoodley, P.; Lewandowski, Z. Biotechnol. Bioeng. 1994, 44, 636-641.
38. Tomasz, M.; Chowdary, D.; Lipman, R.; Shimotakahara, S.; Veiro, D.; Walker, V.; Verdine, G. L. Proc Natl. Acad. Sci. U.S.A. 1986, 83, 6702-6706.
39. Tomasz, M.; Lipman, R.; Chowdary, D.; Pawlak, J.; Verdine, G. L.; Nakanishi, K. Science 1987, 235, 1204-1208.
40. Tomasz, M.; Lipman, R.; Snyder, J. K.; Nakanishi, K. J. Am. Chem. Soc. 1983, 105, 2059-2063.
41. Harrison, J. J.; Ceri, H.; Turner, R. J. Nat. Rev. Microbiol. 2007, 5, 928-938.
42. Thoma, C.; Frank, M.; Rachel, R.; Schmid, S.; Nather, D.; Wanner, G.; Wirth, R. Environ. Microbiol. 2008, 10, 2785-2795.
43. Park, S.; Wolanin, P. M.; Yuzbashyan, E. A.; Lin, H.; Darnton, N. C.; Stock, J. B.; Silberzan, P.; Austin, R. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 13910-13915.
44. Park, S.; Wolanin, P. M.; Yuzbashyan, E. A.; Silberzan, P.; Stock, J. B.; Austin, R. H. Science 2003, 301, 188-188.
45. Jonsson, H.; Levchenko, A. Multiscale Model Sim. 2005, 3, 346-361.
46. Cho, H. J.; Jonsson, H.; Campbell, K.; Melke, P.; Williams, J. W.; Jedynak, B.; Stevens, A. M.; Groisman, A.; Levchenko, A. PLoS Biol. 2007, 5, 2614-2623.
47. Costerton, J. W.; Irvin, R. T.; Cheng, K. J. Annu. Rev. Microbiol. 1981, 35, 299-324.
48. Jager, S.; Mack, D.; Rohde, H.; Horstkotte, M. A.; Knobloch, J. K. M. Appl. Environ. Microbiol. 2005, 71, 5577-5581.
49. Hassell, M. P.; Comins, H. N.; May, R. M. Nature 1994, 370, 290-292.
50. Davidsson, R.; Boketoft, A.; Bristulf, J.; Kotarsky, K.; Olde, B.; Owman, C.; Bengtsson, M.; Laurell, T.; Emneus, J. Anal. Chem. 2004, 76, 4715-4720.
51. Gomez-Sjoberg, R.; Leyrat, A. A.; Pirone, D. M.; Chen, C. S.; Quake, S. R. Anal. Chem. 2007, 79, 8557-8563.
52. Koo, O. K.; Liu, Y. S.; Shuaib, S.; Bhattacharya, S.; Ladisch, M. R.; Bashir, R.; Bhunia, A. K. Anal. Chem. 2009, 81, 3094-3101.
53. Lam, R. H. W.; Kim, M. C.; Thorsen, T. Anal. Chem., in press.
54. Cang, H.; Xu, C. S.; Montiel, D.; Yang, H. Opt. Lett. 2007, 32, 2729-2731.