-
1
-
-
0026506720
-
Transcription factor loading on the MMTV promoter: a bimodal mechanism for promoter activation
-
Archer T.K., Lefebvre P., Wolford R.G., Hager G.L. Transcription factor loading on the MMTV promoter: a bimodal mechanism for promoter activation. Science 1992, 255:1573-1576.
-
(1992)
Science
, vol.255
, pp. 1573-1576
-
-
Archer, T.K.1
Lefebvre, P.2
Wolford, R.G.3
Hager, G.L.4
-
3
-
-
33745532801
-
Increased cell-to-cell variation in gene expression in ageing mouse heart
-
Bahar R., Hartmann C.H., Rodriguez K.A., Denny A.D., Busuttil R.A., Dollé M.E., Calder R.B., Chisholm G.B., Pollock B.H., Klein C.A., Vijg J. Increased cell-to-cell variation in gene expression in ageing mouse heart. Nature 2006, 441:1011-1014.
-
(2006)
Nature
, vol.441
, pp. 1011-1014
-
-
Bahar, R.1
Hartmann, C.H.2
Rodriguez, K.A.3
Denny, A.D.4
Busuttil, R.A.5
Dollé, M.E.6
Calder, R.B.7
Chisholm, G.B.8
Pollock, B.H.9
Klein, C.A.10
Vijg, J.11
-
4
-
-
46649103793
-
Relationship between thermodynamic driving force and one-way fluxes in reversible processes
-
Beard D.A., Qian H. Relationship between thermodynamic driving force and one-way fluxes in reversible processes. PLoS One 2007, 2:e144.
-
(2007)
PLoS One
, vol.2
-
-
Beard, D.A.1
Qian, H.2
-
5
-
-
9644270350
-
Nuclear factor 1 and octamer transcription factor 1 binding preset the chromatin structure of the mouse mammary tumor virus promoter for hormone induction
-
Belikov S., Holmqvist P.H., Astrand C., Wrange O. Nuclear factor 1 and octamer transcription factor 1 binding preset the chromatin structure of the mouse mammary tumor virus promoter for hormone induction. J. Biol. Chem. 2004, 279:49857-49867.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 49857-49867
-
-
Belikov, S.1
Holmqvist, P.H.2
Astrand, C.3
Wrange, O.4
-
6
-
-
0030724751
-
Transcription factor NF-kB regulates inducible Oct-2 gene expression in precursor B lymphocytes
-
Bendall H.H., Schrerer D.C., Edson C.R., Ballard D.W., Oltz E.M. Transcription factor NF-kB regulates inducible Oct-2 gene expression in precursor B lymphocytes. J. Biol. Chem. 1997, 272:28826-28828.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 28826-28828
-
-
Bendall, H.H.1
Schrerer, D.C.2
Edson, C.R.3
Ballard, D.W.4
Oltz, E.M.5
-
7
-
-
0033855774
-
Fluctuations and quality of control in biological cells: zero-order ultrasensitivity reinvestigated
-
Berg O.G., Paulsson J., Ehrenberg M. Fluctuations and quality of control in biological cells: zero-order ultrasensitivity reinvestigated. Biophys. J. 2000, 79:1228-1236.
-
(2000)
Biophys. J.
, vol.79
, pp. 1228-1236
-
-
Berg, O.G.1
Paulsson, J.2
Ehrenberg, M.3
-
8
-
-
15744387380
-
Transcriptional regulation by the numbers: models
-
Bintu L., Buchler N.E., Garcia H.G., Gerland U., Hwa T., Kondev J., Phillips R. Transcriptional regulation by the numbers: models. Curr. Opin. Genet. Dev. 2005, 15:116-124.
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 116-124
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Phillips, R.7
-
9
-
-
0036607524
-
Modeling DNA sequence-based cis-regulatory gene networks
-
Bolouri H., Davidson E.H. Modeling DNA sequence-based cis-regulatory gene networks. Dev. Biol. 2002, 246:2-13.
-
(2002)
Dev. Biol.
, vol.246
, pp. 2-13
-
-
Bolouri, H.1
Davidson, E.H.2
-
12
-
-
67349284051
-
Non-genetic heterogeneity - A mutation-independent driving force for the somatic evolution of tumours
-
Brock A., Chang H., Huang S. Non-genetic heterogeneity - A mutation-independent driving force for the somatic evolution of tumours. Nat. Rev. Genet. 2009, 10:336-342.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 336-342
-
-
Brock, A.1
Chang, H.2
Huang, S.3
-
13
-
-
67149138163
-
Protein sequestration generates a flexible ultrasensitive response in a genetic network
-
Buchler N.E., Cross F.R. Protein sequestration generates a flexible ultrasensitive response in a genetic network. Mol. Syst. Biol. 2009, 5:272.
-
(2009)
Mol. Syst. Biol.
, vol.5
, pp. 272
-
-
Buchler, N.E.1
Cross, F.R.2
-
15
-
-
78650446334
-
Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals
-
Carone B.R., Fauquier L., Habib N., Shea J.M., Hart C.E., Li R., Bock C., Li C., Gu H., Zamore P.D., Meissner A., Weng Z., Hofmann H.A., Friedman N., Rando O.J. Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals. Cell 2010, 143:1084-1096.
-
(2010)
Cell
, vol.143
, pp. 1084-1096
-
-
Carone, B.R.1
Fauquier, L.2
Habib, N.3
Shea, J.M.4
Hart, C.E.5
Li, R.6
Bock, C.7
Li, C.8
Gu, H.9
Zamore, P.D.10
Meissner, A.11
Weng, Z.12
Hofmann, H.A.13
Friedman, N.14
Rando, O.J.15
-
16
-
-
0030995542
-
Nucleosome-mediated synergism between transcription factors on the mouse mammary tumor virus promoter
-
Chávez S., Beato M. Nucleosome-mediated synergism between transcription factors on the mouse mammary tumor virus promoter. Proc. Natl. Acad. Sci. U. S. A. 1997, 94:2885-2890.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 2885-2890
-
-
Chávez, S.1
Beato, M.2
-
17
-
-
0034696445
-
How to make a biological switch
-
Cherry J.L., Adler F.R. How to make a biological switch. J.Theor. Biol. 2000, 203:117-133.
-
(2000)
J.Theor. Biol.
, vol.203
, pp. 117-133
-
-
Cherry, J.L.1
Adler, F.R.2
-
20
-
-
48249134043
-
Evolution of evolvability in gene regulatory networks
-
Crombach A., Hogeweg P. Evolution of evolvability in gene regulatory networks. PLoS Comput. Biol. 2008, 4:e1000112.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Crombach, A.1
Hogeweg, P.2
-
21
-
-
78650061153
-
Transgenerational epigenetic inheritance: more questions than answers
-
Daxinger L., Whitelaw E. Transgenerational epigenetic inheritance: more questions than answers. Genome Res. 2010, 20:1623-1628.
-
(2010)
Genome Res.
, vol.20
, pp. 1623-1628
-
-
Daxinger, L.1
Whitelaw, E.2
-
22
-
-
33746659395
-
Multiple phosphorylation sites confer reproducibility of the rod's single-photon response
-
Doan T., Mendez A., Detwiler P.B., Chen J., Rieke F. Multiple phosphorylation sites confer reproducibility of the rod's single-photon response. Science 2006, 313:530-533.
-
(2006)
Science
, vol.313
, pp. 530-533
-
-
Doan, T.1
Mendez, A.2
Detwiler, P.B.3
Chen, J.4
Rieke, F.5
-
24
-
-
0030793885
-
Binding of NF1 to the MMTV promoter in nucleosomes: influence of rotational phasing, translational positioning and histone H1
-
Eisfeld K., Candau R., Truss M., Beato M. Binding of NF1 to the MMTV promoter in nucleosomes: influence of rotational phasing, translational positioning and histone H1. Nucl. Acids Res. 1997, 25:3733-3742.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 3733-3742
-
-
Eisfeld, K.1
Candau, R.2
Truss, M.3
Beato, M.4
-
25
-
-
77956520011
-
Functional roles for noise in genetic circuits
-
Eldar A., Elowitz M.B. Functional roles for noise in genetic circuits. Nature 2010, 467:167-173.
-
(2010)
Nature
, vol.467
, pp. 167-173
-
-
Eldar, A.1
Elowitz, M.B.2
-
26
-
-
0001485928
-
Entropy in an expanding universe
-
Frautschi S. Entropy in an expanding universe. Science 1982, 217:593-599.
-
(1982)
Science
, vol.217
, pp. 593-599
-
-
Frautschi, S.1
-
27
-
-
0032492846
-
Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex
-
Fryer C.J., Archer T.K. Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex. Nature 1998, 393:88-91.
-
(1998)
Nature
, vol.393
, pp. 88-91
-
-
Fryer, C.J.1
Archer, T.K.2
-
28
-
-
36849148382
-
Origin of life: the RNA world
-
Gilbert W. Origin of life: the RNA world. Nature 1986, 319:618-628.
-
(1986)
Nature
, vol.319
, pp. 618-628
-
-
Gilbert, W.1
-
29
-
-
0001424903
-
An amplified sensitivity arising from covalent modification in biological systems
-
Goldbeter A., Koshland D.E. An amplified sensitivity arising from covalent modification in biological systems. Proc. Natl. Acad. Sci. U. S. A. 1981.
-
(1981)
Proc. Natl. Acad. Sci. U. S. A.
-
-
Goldbeter, A.1
Koshland, D.E.2
-
31
-
-
69549120472
-
Conformational selection or induced fit: a flux description of reaction mechanism
-
Hammes G.G., Chang Y.C., Oas T.G. Conformational selection or induced fit: a flux description of reaction mechanism. Proc. Natl. Acad. Sci. USA 2009, 106:13737-13741.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 13737-13741
-
-
Hammes, G.G.1
Chang, Y.C.2
Oas, T.G.3
-
33
-
-
34247281521
-
Chromatin-dependent cooperativity between site-specific transcription factors in vivo
-
Hebbar P.B., Archer T.K. Chromatin-dependent cooperativity between site-specific transcription factors in vivo. J. Biol. Chem. 2007, 282:8284-8291.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 8284-8291
-
-
Hebbar, P.B.1
Archer, T.K.2
-
34
-
-
33745150728
-
Glucose-induced conformational changes in glucokinase mediate allosteric regulation: transient kinetic analysis
-
Heredia V.V., Thomson J., Nettleton D., Sun S. Glucose-induced conformational changes in glucokinase mediate allosteric regulation: transient kinetic analysis. Biochemistry 2006, 45:7553-7562.
-
(2006)
Biochemistry
, vol.45
, pp. 7553-7562
-
-
Heredia, V.V.1
Thomson, J.2
Nettleton, D.3
Sun, S.4
-
35
-
-
0000359208
-
Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity
-
Hopfield J.J. Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. Proc. Natl. Acad. Sci. USA 1974, 71:4135-4139.
-
(1974)
Proc. Natl. Acad. Sci. USA
, vol.71
, pp. 4135-4139
-
-
Hopfield, J.J.1
-
36
-
-
0020118274
-
Neural networks and physical systems with emergent collective computational abilities
-
Hopfield J.J. Neural networks and physical systems with emergent collective computational abilities. Proc. Natl. Acad. Sci. USA 1982, 79:2554-2558.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 2554-2558
-
-
Hopfield, J.J.1
-
37
-
-
2442668310
-
Genetic repression, allosteric inhibition, and cellular differentiation
-
Acad. Press. Inc., New York, M. Locke (Ed.)
-
Jacob F., Monod J. Genetic repression, allosteric inhibition, and cellular differentiation. Cytodifferential and Macromolecular Synthesis 1963, 30-64. Acad. Press. Inc., New York. M. Locke (Ed.).
-
(1963)
Cytodifferential and Macromolecular Synthesis
, pp. 30-64
-
-
Jacob, F.1
Monod, J.2
-
38
-
-
11944266539
-
Information theory and statistical mechanics
-
Jaynes E.T. Information theory and statistical mechanics. Phys. Rev. 1957, 106:620-630.
-
(1957)
Phys. Rev.
, vol.106
, pp. 620-630
-
-
Jaynes, E.T.1
-
39
-
-
4444311806
-
A proposal for using the ensemble approach to understand genetic regulatory networks
-
Kauffman S. A proposal for using the ensemble approach to understand genetic regulatory networks. J. Theor. Biol. 2004, 230:581-590.
-
(2004)
J. Theor. Biol.
, vol.230
, pp. 581-590
-
-
Kauffman, S.1
-
40
-
-
67149134671
-
On the free energy that drove primordial anabolism
-
Kaufmann M. On the free energy that drove primordial anabolism. Int. J. Mol. Sci. 2009, 10:1853-1871.
-
(2009)
Int. J. Mol. Sci.
, vol.10
, pp. 1853-1871
-
-
Kaufmann, M.1
-
41
-
-
0027209703
-
Transition modes in Ising networks: an approximate theory for macromolecular recognition
-
Keating S., Di Cera E. Transition modes in Ising networks: an approximate theory for macromolecular recognition. Biophys. J. 1993, 65:253-269.
-
(1993)
Biophys. J.
, vol.65
, pp. 253-269
-
-
Keating, S.1
Di Cera, E.2
-
42
-
-
58149198799
-
Variation in patterns of human meiotic recombination
-
Khil P.P., Camerini-Otero R.D. Variation in patterns of human meiotic recombination. Genome Dyn. 2009, 5:117-127.
-
(2009)
Genome Dyn.
, vol.5
, pp. 117-127
-
-
Khil, P.P.1
Camerini-Otero, R.D.2
-
43
-
-
33845875741
-
Binding then bending: a mechanism for wrapping DNA
-
Khrapunov S., Brenowitz M., Rice P.A., Catalano C.E. Binding then bending: a mechanism for wrapping DNA. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:19217-19218.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 19217-19218
-
-
Khrapunov, S.1
Brenowitz, M.2
Rice, P.A.3
Catalano, C.E.4
-
44
-
-
33947472850
-
A schematic method of deriving the rate laws for enzyme-catalyzed reactions
-
King E.L., Altman C. A schematic method of deriving the rate laws for enzyme-catalyzed reactions. J. Phys. Chem. B. 1956, 60:1375-1378.
-
(1956)
J. Phys. Chem. B.
, vol.60
, pp. 1375-1378
-
-
King, E.L.1
Altman, C.2
-
45
-
-
0001858251
-
Application of a theory of enzyme specificity to protein synthesis
-
Koshland D.E. Application of a theory of enzyme specificity to protein synthesis. Proc. Natl. Acad. Sci. U.S.A 1958, 44:98-104.
-
(1958)
Proc. Natl. Acad. Sci. U.S.A
, vol.44
, pp. 98-104
-
-
Koshland, D.E.1
-
46
-
-
0013863816
-
Comparison of experimental binding data and theoretical models in proteins containing subunits
-
Koshland D.E., Nemethy G., Filmer D. Comparison of experimental binding data and theoretical models in proteins containing subunits. Biochemistry 1966, 5:365-385.
-
(1966)
Biochemistry
, vol.5
, pp. 365-385
-
-
Koshland, D.E.1
Nemethy, G.2
Filmer, D.3
-
47
-
-
0000941724
-
Switches, thresholds and ultrasensitivity
-
Koshland D.E. Switches, thresholds and ultrasensitivity. Trends Biochem. Sci. 1987, 12:225-229.
-
(1987)
Trends Biochem. Sci.
, vol.12
, pp. 225-229
-
-
Koshland, D.E.1
-
48
-
-
77950456083
-
How did LUCA make a living? Chemiosmosis in the origin of life
-
Lane N., Allen J.F., Martin W. How did LUCA make a living? Chemiosmosis in the origin of life. Bioessays 2010, 32:271-280.
-
(2010)
Bioessays
, vol.32
, pp. 271-280
-
-
Lane, N.1
Allen, J.F.2
Martin, W.3
-
49
-
-
12044250952
-
Boltzmann's entropy and Time's arrow
-
Lebowitz J.L. Boltzmann's entropy and Time's arrow. Phys. Today 1993, 46:32-38.
-
(1993)
Phys. Today
, vol.46
, pp. 32-38
-
-
Lebowitz, J.L.1
-
50
-
-
84860407905
-
Cooperative behavior in simple and complex systems. Science for Survival and Sustainable development, Pointifical Academy of Sciences
-
Lebowitz J.L. Cooperative behavior in simple and complex systems. Science for Survival and Sustainable development, Pointifical Academy of Sciences. Scripta Varia 1999, 98(98):321-325.
-
(1999)
Scripta Varia
, vol.98
, Issue.98
, pp. 321-325
-
-
Lebowitz, J.L.1
-
52
-
-
0025285220
-
Demonstration of a slow conformational change in liver glucokinase by fluorescence spectroscopy
-
Lin S.X., Neet K.E. Demonstration of a slow conformational change in liver glucokinase by fluorescence spectroscopy. J. Biol. Chem. 1990, 265:9670-9675.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 9670-9675
-
-
Lin, S.X.1
Neet, K.E.2
-
53
-
-
0041856190
-
Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirement
-
Masters K.M., Parkhurst K.M., Daugherty M.A., Parkhurst L.J. Native human TATA-binding protein simultaneously binds and bends promoter DNA without a slow isomerization step or TFIIB requirement. J. Biol. Chem. 2003, 278:31685-31690.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 31685-31690
-
-
Masters, K.M.1
Parkhurst, K.M.2
Daugherty, M.A.3
Parkhurst, L.J.4
-
54
-
-
33746931732
-
Threshold responses to morphogen gradients by zero-order ultrasensitivity
-
Melen G.J., Levy S., Barkai N., Shilo B.Z. Threshold responses to morphogen gradients by zero-order ultrasensitivity. Mol. Syst. Biol. 2005, 1:0028.
-
(2005)
Mol. Syst. Biol.
, vol.1
, pp. 0028
-
-
Melen, G.J.1
Levy, S.2
Barkai, N.3
Shilo, B.Z.4
-
55
-
-
34547677692
-
Cooperative equilibrium curves generated by ordered ligand binding to multi-site molecules
-
Michel D. Cooperative equilibrium curves generated by ordered ligand binding to multi-site molecules. Biophys. Chem. 2007, 129:284-288.
-
(2007)
Biophys. Chem.
, vol.129
, pp. 284-288
-
-
Michel, D.1
-
56
-
-
45849096417
-
An alternative theoretical formula for hemoglobin oxygenation
-
Michel D. An alternative theoretical formula for hemoglobin oxygenation. Eur. Biophys. J. 2008, 37:823-827.
-
(2008)
Eur. Biophys. J.
, vol.37
, pp. 823-827
-
-
Michel, D.1
-
57
-
-
67349180635
-
Fine tuning gene expression through short DNA-protein binding cycles
-
Michel D. Fine tuning gene expression through short DNA-protein binding cycles. Biochimie 2009, 91:933-941.
-
(2009)
Biochimie
, vol.91
, pp. 933-941
-
-
Michel, D.1
-
58
-
-
76349086026
-
How transcription factors can adjust the gene expression floodgates
-
Michel D. How transcription factors can adjust the gene expression floodgates. Prog. Biophys. Mol. Biol. 2010, 32:16-37.
-
(2010)
Prog. Biophys. Mol. Biol.
, vol.32
, pp. 16-37
-
-
Michel, D.1
-
59
-
-
80051583095
-
Hierarchical cooperativity mediated by chromatin remodeling; the model of the MMTV transcription regulation
-
in press, doi:10.1016/j.jtbi.2011.07.020
-
Michel, D. Hierarchical cooperativity mediated by chromatin remodeling; the model of the MMTV transcription regulation. J. Theor. Biol., in press, . doi:10.1016/j.jtbi.2011.07.020.
-
J. Theor. Biol.
-
-
Michel, D.1
-
60
-
-
69149090263
-
Role of conformational dynamics in kinetics of an enzymatic cycle in a nonequilibrium steady state
-
Min W., Xie X.S., Bagchi B. Role of conformational dynamics in kinetics of an enzymatic cycle in a nonequilibrium steady state. J. Chem. Phys. 2009, 131:065104.
-
(2009)
J. Chem. Phys.
, vol.131
, pp. 065104
-
-
Min, W.1
Xie, X.S.2
Bagchi, B.3
-
61
-
-
78651107675
-
Nucleosome-mediated cooperativity between transcription factors
-
Mirny L.A. Nucleosome-mediated cooperativity between transcription factors. Proc. Natl. Acad. Sci. U.S.A 2010, 107:22534-22539.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A
, vol.107
, pp. 22534-22539
-
-
Mirny, L.A.1
-
62
-
-
78651189765
-
On the nature of allosteric transitions: a plausible model
-
Monod J., Wyman J., Changeux J.-P. On the nature of allosteric transitions: a plausible model. J. Mol. Biol. 1965, 12:88-118.
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.-P.3
-
63
-
-
0016793283
-
Kinetic amplification of enzyme discrimination
-
Ninio J. Kinetic amplification of enzyme discrimination. Biochimie 1975, 57:587-595.
-
(1975)
Biochimie
, vol.57
, pp. 587-595
-
-
Ninio, J.1
-
64
-
-
77449141025
-
Biophysics and systems biology
-
Noble D. Biophysics and systems biology. Phil. Trans. R. Soc. A 2010, 368:1125-1139.
-
(2010)
Phil. Trans. R. Soc. A
, vol.368
, pp. 1125-1139
-
-
Noble, D.1
-
65
-
-
0028919503
-
Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor
-
Parvin J.D., McCormick R.J., Sharp P.A., Fisher D.E. Pre-bending of a promoter sequence enhances affinity for the TATA-binding factor. Nature 1995, 373:724-727.
-
(1995)
Nature
, vol.373
, pp. 724-727
-
-
Parvin, J.D.1
McCormick, R.J.2
Sharp, P.A.3
Fisher, D.E.4
-
66
-
-
0014958182
-
Stereochemistry of cooperative effects in haemoglobin
-
Perutz M.F. Stereochemistry of cooperative effects in haemoglobin. Nature 1970, 228:726-739.
-
(1970)
Nature
, vol.228
, pp. 726-739
-
-
Perutz, M.F.1
-
67
-
-
0038762202
-
Hemoglobin structure and respiratory transport
-
Perutz M.F. Hemoglobin structure and respiratory transport. Scientific Am. 1978, 259:68-86.
-
(1978)
Scientific Am.
, vol.259
, pp. 68-86
-
-
Perutz, M.F.1
-
68
-
-
12244261838
-
Time, structure and fluctuations
-
Nobel lecture 8 December, 1977.
-
Prigogine, I., 1977. Time, structure and fluctuations. Nobel lecture 8 December, 1977. http://nobelprize.org/nobel_prizes/chemistry/laureates/1977/prigogine-lecture.html.
-
(1977)
-
-
Prigogine, I.1
-
69
-
-
0037268381
-
The driving force for life's emergence: kinetic and thermodynamic considerations
-
Pross A. The driving force for life's emergence: kinetic and thermodynamic considerations. J. Theor. Biol. 2003, 220:393-406.
-
(2003)
J. Theor. Biol.
, vol.220
, pp. 393-406
-
-
Pross, A.1
-
70
-
-
0014057553
-
Co-operative effects in enzyme catalysis: a possible kinetic model based on substrate-induced conformation isomerization
-
Rabin B.R. Co-operative effects in enzyme catalysis: a possible kinetic model based on substrate-induced conformation isomerization. Biochem. J. 1967, 102:22C-23C.
-
(1967)
Biochem. J.
, vol.102
-
-
Rabin, B.R.1
-
71
-
-
53549123008
-
Nature nurture, or chance: stochastic gene expression and its consequences
-
Raj A., van Oudenaarden A. Nature nurture, or chance: stochastic gene expression and its consequences. Cell 2008, 135:216-226.
-
(2008)
Cell
, vol.135
, pp. 216-226
-
-
Raj, A.1
van Oudenaarden, A.2
-
73
-
-
67649826220
-
From DNA sequence to transcriptional behaviour: a quantitative approach
-
Segal E., Widom J. From DNA sequence to transcriptional behaviour: a quantitative approach. Nat. Rev. Genet. 2009, 10:443-456.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 443-456
-
-
Segal, E.1
Widom, J.2
-
74
-
-
0345902803
-
Direct observation of intermediate ligation states of hemoglobin
-
Simonneaux G., Bondon A., Brunel C., Sodano P. Direct observation of intermediate ligation states of hemoglobin. J. Am. Chem. Soc. 1988, 110:7637-7640.
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 7637-7640
-
-
Simonneaux, G.1
Bondon, A.2
Brunel, C.3
Sodano, P.4
-
75
-
-
33845500268
-
Stepwise binding and bending of DNA by Escherichia coli integration host factor
-
Sugimura S., Crothers D.M. Stepwise binding and bending of DNA by Escherichia coli integration host factor. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:18510-18514.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 18510-18514
-
-
Sugimura, S.1
Crothers, D.M.2
-
76
-
-
52949089027
-
Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection
-
Sullivan S.M., Holyoak T. Enzymes with lid-gated active sites must operate by an induced fit mechanism instead of conformational selection. Proc. Natl. Acad. Sci. U. S. A. 2008, 105:13829-13834.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 13829-13834
-
-
Sullivan, S.M.1
Holyoak, T.2
-
77
-
-
0001273302
-
The principle of microscopic reversibility
-
Tolman T.C. The principle of microscopic reversibility. Proc. Natl. Acad. Sci. U. S. A. 1925, 11:436-439.
-
(1925)
Proc. Natl. Acad. Sci. U. S. A.
, vol.11
, pp. 436-439
-
-
Tolman, T.C.1
-
78
-
-
70349977175
-
The origin of the genetic code and of the earliest oligopeptides
-
Trifonov E.N. The origin of the genetic code and of the earliest oligopeptides. Res. Microbiol. 2009, 160:481-486.
-
(2009)
Res. Microbiol.
, vol.160
, pp. 481-486
-
-
Trifonov, E.N.1
-
79
-
-
70349985700
-
From the primordial soup to the latest universal common ancestor
-
Vaneechoutte M., Fani R. From the primordial soup to the latest universal common ancestor. Res. Microbiol. 2009, 160:437-440.
-
(2009)
Res. Microbiol.
, vol.160
, pp. 437-440
-
-
Vaneechoutte, M.1
Fani, R.2
-
80
-
-
0031463309
-
Cisplatin- and UV-damaged DNA lure the basal transcription factor TFIID/TBP
-
Vichi P., Coin F., Renaud J.P., Vermeulen W., Hoeijmakers J.H., Moras D., Egly J.M. Cisplatin- and UV-damaged DNA lure the basal transcription factor TFIID/TBP. EMBO J. 1997, 16:7444-7456.
-
(1997)
EMBO J.
, vol.16
, pp. 7444-7456
-
-
Vichi, P.1
Coin, F.2
Renaud, J.P.3
Vermeulen, W.4
Hoeijmakers, J.H.5
Moras, D.6
Egly, J.M.7
-
81
-
-
0005604172
-
Evolutionary systems; animal and human
-
Waddington C.H. Evolutionary systems; animal and human. Nature 1959, 183:1634-1638.
-
(1959)
Nature
, vol.183
, pp. 1634-1638
-
-
Waddington, C.H.1
-
82
-
-
0037194057
-
Experimental demonstration of violations of the second law of thermodynamics for small systems and short iime scales
-
Wang G.M., Sevick E.M., Mittag E., Searles D.J., Evans D.J. Experimental demonstration of violations of the second law of thermodynamics for small systems and short iime scales. Phys. Rev. Lett. 2002, 89:050601.
-
(2002)
Phys. Rev. Lett.
, vol.89
, pp. 050601
-
-
Wang, G.M.1
Sevick, E.M.2
Mittag, E.3
Searles, D.J.4
Evans, D.J.5
-
83
-
-
65249090946
-
Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis
-
Weikl T.R., von Deuster C. Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis. Proteins 2009, 75:104-110.
-
(2009)
Proteins
, vol.75
, pp. 104-110
-
-
Weikl, T.R.1
von Deuster, C.2
-
84
-
-
0030768931
-
The Hill equation revisited: uses and misuses
-
Weiss J.N. The Hill equation revisited: uses and misuses. FASEB J. 1997, 11:835-841.
-
(1997)
FASEB J.
, vol.11
, pp. 835-841
-
-
Weiss, J.N.1
-
85
-
-
0014728574
-
The regulation of enzyme activity and allosteric transition
-
Whitehead E. The regulation of enzyme activity and allosteric transition. Prog. Biophys. Mol. Biol. 1970, 21:321-397.
-
(1970)
Prog. Biophys. Mol. Biol.
, vol.21
, pp. 321-397
-
-
Whitehead, E.1
-
86
-
-
79957945423
-
A bacterium that can grow by using arsenic instead of phosphorus
-
Wolfe-Simon F., Blum J.S., Kulp T.R., Gordon G.W., Hoeft S.E., Pett-Ridge J., Stolz J.F., Webb S.M., Weber P.K., Davies P.C., Anbar A.D., Oremland R.S. A bacterium that can grow by using arsenic instead of phosphorus. Science 2010, 332:1163-1166.
-
(2010)
Science
, vol.332
, pp. 1163-1166
-
-
Wolfe-Simon, F.1
Blum, J.S.2
Kulp, T.R.3
Gordon, G.W.4
Hoeft, S.E.5
Pett-Ridge, J.6
Stolz, J.F.7
Webb, S.M.8
Weber, P.K.9
Davies, P.C.10
Anbar, A.D.11
Oremland, R.S.12
-
87
-
-
0037040419
-
A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition
-
Zhao X., Herr W. A regulated two-step mechanism of TBP binding to DNA: a solvent-exposed surface of TBP inhibits TATA box recognition. Cell 2002, 108:615-627.
-
(2002)
Cell
, vol.108
, pp. 615-627
-
-
Zhao, X.1
Herr, W.2
|