Functional analysis of the interaction between the mismatch repair protein MutS and the replication processivity factor β clamp in Pseudomonas aeruginosa

DNA Repair

Volumn 11, Issue 5, 2012, Pages 463-469

  Monti, Mariela R ^a   Miguel, Virginia ^a   Borgogno, Maria V ^a   Argaraña, Carlos E ^a  

^a UNIVERSIDAD NACIONAL DE CÓRDOBA   (Argentina)

Author keywords

clamp; DNA replication; Mismatch repair; MutS; Pseudomonas aeruginosa

Indexed keywords

2 AMINOPURINE; CIPROFLOXACIN; PROTEIN MUTS; RIFAMPICIN; TETRACYCLINE;

ALLELE; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL STRAIN; DNA BINDING MOTIF; DNA REPAIR; DNA REPLICATION; FRAMESHIFT MUTATION; MISMATCH REPAIR; MUTATION; NONHUMAN; PRIORITY JOURNAL; PSEUDOMONAS AERUGINOSA;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; DNA POLYMERASE III; MUTATION; MUTATION RATE; MUTS DNA MISMATCH-BINDING PROTEIN; PROTEIN BINDING; PROTEIN INTERACTION DOMAINS AND MOTIFS; PSEUDOMONAS AERUGINOSA;

PSEUDOMONAS AERUGINOSA;

EID: 84860231773     PISSN: 15687864     EISSN: 15687856     Source Type: Journal    
DOI: 10.1016/j.dnarep.2012.01.015     Document Type: Article

References (47)

1. Li G.M. Mechanisms and functions of DNA mismatch repair. Cell Res. 2008, 18:85-98.
2. Hsieh P., Yamane K. DNA mismatch repair: molecular mechanism, cancer, and ageing. Mech. Ageing Dev. 2008, 129:391-407.
3. Jiricny J. The multifaceted mismatch-repair system. Nat. Rev. Mol. Cell Biol. 2006, 7:335-346.
4. O'Donnell M., Kuriyan J., Kong X.P., Stukenberg P.T., Onrust R. The sliding clamp of DNA polymerase III holoenzyme encircles DNA. Mol. Biol. Cell 1992, 3:953-957.
5. Katayama T., Ozaki S., Keyamura K., Fujimitsu K. Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC. Nat. Rev. Microbiol. 2010, 8:163-170.
6. Lopez de Saro F.J. Regulation of interactions with sliding clamps during DNA replication and repair. Curr. Genomics 2009, 10:206-215.
7. Moldovan G.L., Pfander B., Jentsch S. PCNA, the maestro of the replication fork. Cell 2007, 129:665-679.
8. Gu L., Hong Y., McCulloch S., Watanabe H., Li G.M. ATP-dependent interaction of human mismatch repair proteins and dual role of PCNA in mismatch repair. Nucleic Acids Res. 1998, 26:1173-1178.
9. Umar A., Buermeyer A.B., Simon J.A., Thomas D.C., Clark A.B., Liskay R.M., Kunkel T.A. Requirement for PCNA in DNA mismatch repair at a step preceding DNA resynthesis. Cell 1996, 87:65-73.
10. Clark A.B., Valle F., Drotschmann K., Gary R.K., Kunkel T.A. Functional interaction of proliferating cell nuclear antigen with MSH2-MSH6 and MSH2-MSH3 complexes. J. Biol. Chem. 2000, 275:36498-36501.
11. Kleczkowska H.E., Marra G., Lettieri T., Jiricny J. hMSH3 and hMSH6 interact with PCNA and colocalize with it to replication foci. Genes Dev. 2001, 15:724-736.
12. Lopez de Saro F.J., O'Donnell M. Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:8376-8380.
13. Simmons L.A., Davies B.W., Grossman A.D., Walker G.C. Beta clamp directs localization of mismatch repair in Bacillus subtilis. Mol. Cell 2008, 29:291-301.
14. Masih P.J., Kunnev D., Melendy T. Mismatch Repair proteins are recruited to replicating DNA through interaction with proliferating cell nuclear antigen (PCNA). Nucleic Acids Res. 2008, 36:67-75.
15. Flores-Rozas H., Clark D., Kolodner R.D. Proliferating cell nuclear antigen and Msh2p-Msh6p interact to form an active mispair recognition complex. Nat. Genet. 2000, 26:375-378.
16. Lau P.J., Kolodner R.D. Transfer of the MSH2·MSH6 complex from proliferating cell nuclear antigen to mispaired bases in DNA. J. Biol. Chem. 2003, 278:14-17.
17. Pavlov Y.I., Mian I.M., Kunkel T.A. Evidence for preferential mismatch repair of lagging strand DNA replication errors in yeast. Curr. Biol. 2003, 13:744-748.
18. Pluciennik A., Dzantiev L., Iyer R.R., Constantin N., Kadyrov F.A., Modrich P. PCNA function in the activation and strand direction of MutLalpha endonuclease in mismatch repair. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:16066-16071.
19. Dupes N.M., Walsh B.W., Klocko A.D., Lenhart J.S., Peterson H.L., Gessert D.A., Pavlick C.E., Simmons L.A. Mutations in the Bacillus subtilis beta clamp that separate its roles in DNA replication from mismatch repair. J. Bacteriol. 2010, 192:3452-3463.
20. Yang H., Miller J.H. Deletion of dnaN1 generates a mutator phenotype in Bacillus anthracis. DNA Repair (Amst.) 2008, 7:507-514.
21. Lopez de Saro F.J., Marinus M.G., Modrich P., O'Donnell M. The beta sliding clamp binds to multiple sites within MutL and MutS. J. Biol. Chem. 2006, 281:14340-14349.
22. Pluciennik A., Burdett V., Lukianova O., O'Donnell M., Modrich P. Involvement of the beta clamp in methyl-directed mismatch repair in vitro. J. Biol. Chem. 2009, 284:32782-32791.
23. Zhou Y., Li F., Chen Y., Bi L., Zhang X.E. Functional analyses of Escherichia coli MutS-beta clamp interaction in vitro and in vivo. Curr. Microbiol. 2010, 60:466-470.
24. Stover C.K., et al. Complete genome sequence of Pseudomonas aeruginosa PAO1, an opportunistic pathogen. Nature 2000, 406:959-964.
25. Oliver A., Levin B.R., Juan C., Baquero F., Blázquez J. Hypermutation and the preexistence of antibiotic-resistant Pseudomonas aeruginosa mutants: implications for susceptibility testing and treatment of chronic infections. Antimicrob. Agents Chemother. 2004, 48:4226-4233.
26. Jacobs M.A., Alwood A., Thaipisuttikul I., Spencer D., Haugen E., Ernst S., Will O., Kaul R., Raymond C., Levy R., Chun-Rong L., Guenthner D., Bovee D., Olson M.V., Manoil C. Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:14339-14344.
27. de Lorenzo V., Timmis K.N. Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons. Methods Enzymol. 1994, 235:386-405.
28. Kovach M.E., Elzer P.H., Hill D.S., Robertson G.T., Farris M.A., Roop R.M., Peterson K.M. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 1995, 166:175-176.
29. Kaniga K., Delor I., Cornelis G.R. A wide-host-range suicide vector for improving reverse genetics in gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica. Gene 1991, 109:137-141.
30. Miguel V., Monti M.R., Argarana C.E. The role of MutS oligomers on Pseudomonas aeruginosa mismatch repair system activity. DNA Repair (Amst.) 2008, 7:1799-1808.
31. Eng J.K., McCormack A.L., Yates J.R. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5:976-989.
32. Luria S.E., Delbrück M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 1943, 28:491-511.
33. Smania A.M., Segura I., Pezza R.J., Becerra C., Albesa I., Argarana C.E. Emergence of phenotypic variants upon mismatch repair disruption in Pseudomonas aeruginosa. Microbiology 2004, 150:1327-1338.
34. Sarkar S., Ma W.T., Sandri G.V.H. On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants. Genetica 1992, 85:173-179.
35. Zheng Q. Statistical and algorithmic methods for fluctuation analysis with SALVADOR as an implementation. Math. Biosci. 2002, 176:237.
36. Stewart F.M. Fluctuation tests: how reliable are the estimates of mutation rates?. Genetics 1994, 137:1139-1146.
37. Rosche W.A., Foster P.L. Determining mutation rates in bacterial populations. Methods 2000, 20:4-17.
38. Dalrymple B.P., Kongsuwan K., Wijffels G., Dixon N.E., Jennings P.A. A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. U.S.A. 2001, 98:11627-11632.
39. Warbrick E. The puzzle of PCNA's many partners. Bioessays 2000, 22:997-1006.
40. Calmann M.A., Nowosielska A., Marinus M.G. Separation of mutation avoidance and antirecombination functions in an Escherichia coli mutS mutant. Nucleic Acids Res. 2005, 33:1193-1200.
41. Calmann M.A., Nowosielska A., Marinus M.G. The MutS C terminus is essential for mismatch repair activity in vivo. J. Bacteriol. 2005, 187:6577-6579.
42. Pitsikas P., Patapas J.M., Cupples C.G. Mechanism of 2-aminopurine-stimulated mutagenesis in Escherichia coli. Mutat. Res. 2004, 550:25-32.
43. Schaaper R.M. Base Selection proofreading and mismatch repair during DNA replication in Escherichia coli. J. Biol. Chem. 1993, 268:23762-23765.
44. Morero N.R., Monti M.R., Argarana C.E. Effect of ciprofloxacin concentration on the frequency and nature of resistant mutants selected from Pseudomonas aeruginosa mutS and mutT hypermutators. Antimicrob. Agents Chemother. 2011, 55:3668-3676.
45. Jatsenko T., Tover A., Tegova R., Kivisaar M. Molecular characterization of Rif(r) mutations in Pseudomonas aeruginosa and Pseudomonas putida. Mutat. Res. 2010, 683:106-114.
46. Jacquelin D.K., Filiberti A., Argaraña C.E., Barra J.L. Pseudomonas aeruginosa MutL protein functions in Escherichia coli. Biochem. J. 2005, 388:879-887.
47. Klocko A.D., Schroeder J.W., Walsh B.W., Lenhart J.S., Evans M.L., Simmons L.A. Mismatch repair causes the dynamic release of an essential DNA polymerase from the replication fork. Mol. Microbiol. 2011, 82:648-663.