-
2
-
-
22244478079
-
Cellular DNA replicases: components and dynamics at the replication fork
-
Johnson A., and O'Donnell M. Cellular DNA replicases: components and dynamics at the replication fork. Annu. Rev. Biochem. 74 (2005) 283-315
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 283-315
-
-
Johnson, A.1
O'Donnell, M.2
-
3
-
-
32644456504
-
Clubbing together on clamps: The key to translesion synthesis
-
Lehmann A.R. Clubbing together on clamps: The key to translesion synthesis. DNA Repair (Amst) 5 (2006) 404-407
-
(2006)
DNA Repair (Amst)
, vol.5
, pp. 404-407
-
-
Lehmann, A.R.1
-
4
-
-
34047149973
-
Replisome mechanics: insights into a twin DNA polymerase machine
-
Pomerantz R.T., and O'Donnell M. Replisome mechanics: insights into a twin DNA polymerase machine. Trends Microbiol. 15 (2007) 156-164
-
(2007)
Trends Microbiol.
, vol.15
, pp. 156-164
-
-
Pomerantz, R.T.1
O'Donnell, M.2
-
5
-
-
0025809742
-
Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme
-
Stukenberg P.T., Studwell-Vaughan P.S., and O'Donnell M. Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme. J. Biol. Chem. 266 (1991) 11328-11334
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11328-11334
-
-
Stukenberg, P.T.1
Studwell-Vaughan, P.S.2
O'Donnell, M.3
-
6
-
-
0026717535
-
Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp
-
Kong X.P., Onrust R., O'Donnell M., and Kuriyan J. Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp. Cell 69 (1992) 425-437
-
(1992)
Cell
, vol.69
, pp. 425-437
-
-
Kong, X.P.1
Onrust, R.2
O'Donnell, M.3
Kuriyan, J.4
-
7
-
-
0028100764
-
Crystallization of proliferating cell nuclear antigen (PCNA) from Saccharomyces cerevisiae
-
Krishna T.S., Fenyo D., Kong X.P., Gary S., Chait B.T., Burgers P., and Kuriyan J. Crystallization of proliferating cell nuclear antigen (PCNA) from Saccharomyces cerevisiae. J. Mol. Biol. 241 (1994) 265-268
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 265-268
-
-
Krishna, T.S.1
Fenyo, D.2
Kong, X.P.3
Gary, S.4
Chait, B.T.5
Burgers, P.6
Kuriyan, J.7
-
8
-
-
0030592544
-
Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA
-
Gulbis J.M., Kelman Z., Hurwitz J., O'Donnell M., and Kuriyan J. Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA. Cell 87 (1996) 297-306
-
(1996)
Cell
, vol.87
, pp. 297-306
-
-
Gulbis, J.M.1
Kelman, Z.2
Hurwitz, J.3
O'Donnell, M.4
Kuriyan, J.5
-
9
-
-
0035107856
-
Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus
-
Matsumiya S., Ishino Y., and Morikawa K. Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus. Protein Sci. 10 (2001) 17-23
-
(2001)
Protein Sci.
, vol.10
, pp. 17-23
-
-
Matsumiya, S.1
Ishino, Y.2
Morikawa, K.3
-
10
-
-
33750008990
-
Structure of an archaeal PCNA1-PCNA2-FEN1 complex: elucidating PCNA subunit and client enzyme specificity
-
Dore A.S., Kilkenny M.L., Jones S.A., Oliver A.W., Roe S.M., Bell S.D., and Pearl L.H. Structure of an archaeal PCNA1-PCNA2-FEN1 complex: elucidating PCNA subunit and client enzyme specificity. Nucl. Acids Res. 34 (2006) 4515-4526
-
(2006)
Nucl. Acids Res.
, vol.34
, pp. 4515-4526
-
-
Dore, A.S.1
Kilkenny, M.L.2
Jones, S.A.3
Oliver, A.W.4
Roe, S.M.5
Bell, S.D.6
Pearl, L.H.7
-
11
-
-
33749534839
-
Structure of the heterotrimeric PCNA from Sulfolobus solfataricus
-
Williams G.J., Johnson K., Rudolf J., McMahon S.A., Carter L., Oke M., Liu H., Taylor G.L., White M.F., and Naismith J.H. Structure of the heterotrimeric PCNA from Sulfolobus solfataricus. Acta Crystallogr. Sect. F Struct Biol. Cryst. Commun. 62 Pt 10 (2006) 944-948
-
(2006)
Acta Crystallogr. Sect. F Struct Biol. Cryst. Commun.
, vol.62
, Issue.PART 10
, pp. 944-948
-
-
Williams, G.J.1
Johnson, K.2
Rudolf, J.3
McMahon, S.A.4
Carter, L.5
Oke, M.6
Liu, H.7
Taylor, G.L.8
White, M.F.9
Naismith, J.H.10
-
12
-
-
33748146483
-
Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III
-
Lamers M.H., Georgescu R.E., Lee S.G., O'Donnell M., and Kuriyan J. Crystal structure of the catalytic alpha subunit of E. coli replicative DNA polymerase III. Cell 126 (2006) 881-892
-
(2006)
Cell
, vol.126
, pp. 881-892
-
-
Lamers, M.H.1
Georgescu, R.E.2
Lee, S.G.3
O'Donnell, M.4
Kuriyan, J.5
-
13
-
-
0037523309
-
The diverse spectrum of sliding clamp interacting proteins
-
Vivona J.B., and Kelman Z. The diverse spectrum of sliding clamp interacting proteins. FEBS Lett. 546 (2003) 167-172
-
(2003)
FEBS Lett.
, vol.546
, pp. 167-172
-
-
Vivona, J.B.1
Kelman, Z.2
-
14
-
-
0035902496
-
Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I
-
López de Saro F.J., and O'Donnell M. Interaction of the beta sliding clamp with MutS, ligase, and DNA polymerase I. Proc. Natl. Acad. Sci. U.S.A. 98 (2001) 8376-8380
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 8376-8380
-
-
López de Saro, F.J.1
O'Donnell, M.2
-
15
-
-
0035949599
-
A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems
-
Dalrymple B.P., Kongsuwan K., Wijffels G., Dixon N.E., and Jennings P.A. A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems. Proc. Natl. Acad. Sci. U.S.A. 98 (2001) 11627-11632
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 11627-11632
-
-
Dalrymple, B.P.1
Kongsuwan, K.2
Wijffels, G.3
Dixon, N.E.4
Jennings, P.A.5
-
16
-
-
0037019606
-
Pivotal role of the beta-clamp in translesion DNA synthesis and mutagenesis in E. coli cells
-
Becherel O.J., Fuchs R.P., and Wagner J. Pivotal role of the beta-clamp in translesion DNA synthesis and mutagenesis in E. coli cells. DNA Repair (Amst) 1 (2002) 703-708
-
(2002)
DNA Repair (Amst)
, vol.1
, pp. 703-708
-
-
Becherel, O.J.1
Fuchs, R.P.2
Wagner, J.3
-
17
-
-
0346654081
-
Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases
-
Burnouf D.Y., Olieric V., Wagner J., Fujii S., Reinbolt J., Fuchs R.P., and Dumas P. Structural and biochemical analysis of sliding clamp/ligand interactions suggest a competition between replicative and translesion DNA polymerases. J. Mol. Biol. 335 (2004) 1187-1197
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 1187-1197
-
-
Burnouf, D.Y.1
Olieric, V.2
Wagner, J.3
Fujii, S.4
Reinbolt, J.5
Fuchs, R.P.6
Dumas, P.7
-
19
-
-
0041885325
-
Proliferating cell nuclear antigen (PCNA): a dancer with many partners
-
Maga G., and Hübscher U. Proliferating cell nuclear antigen (PCNA): a dancer with many partners. J. Cell Sci. 116 Pt 15 (2003) 3051-3060
-
(2003)
J. Cell Sci.
, vol.116
, Issue.PART 15
, pp. 3051-3060
-
-
Maga, G.1
Hübscher, U.2
-
21
-
-
0035110865
-
The ring-type polymerase sliding clamp family
-
REVIEWS3001
-
Bruck I., and O'Donnell M. The ring-type polymerase sliding clamp family. Genome Biol. 2 (2001) REVIEWS3001
-
(2001)
Genome Biol.
, vol.2
-
-
Bruck, I.1
O'Donnell, M.2
-
22
-
-
0018940686
-
A temperature-sensitive Escherichia coli mutant defective in DNA replication: dnaN, a new gene adjacent to the dnaA gene
-
Sakakibara Y., and Mizukami T. A temperature-sensitive Escherichia coli mutant defective in DNA replication: dnaN, a new gene adjacent to the dnaA gene. Mol. Geb. Genet. 178 (1980) 541-553
-
(1980)
Mol. Geb. Genet.
, vol.178
, pp. 541-553
-
-
Sakakibara, Y.1
Mizukami, T.2
-
23
-
-
0842281648
-
Identification of specific amino acid residues in the E. coli beta processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD'
-
Duzen J.M., Walker G.C., and Sutton M.D. Identification of specific amino acid residues in the E. coli beta processivity clamp involved in interactions with DNA polymerase III, UmuD and UmuD'. DNA Repair (Amst) 3 (2004) 301-312
-
(2004)
DNA Repair (Amst)
, vol.3
, pp. 301-312
-
-
Duzen, J.M.1
Walker, G.C.2
Sutton, M.D.3
-
24
-
-
15944400711
-
Mutant forms of the Escherichia coli beta sliding clamp that distinguish between its roles in replication and DNA polymerase V-dependent translesion DNA synthesis
-
Sutton M.D., Duzen J.M., and Maul R.W. Mutant forms of the Escherichia coli beta sliding clamp that distinguish between its roles in replication and DNA polymerase V-dependent translesion DNA synthesis. Mol. Microbiol. 55 (2005) 1751-1766
-
(2005)
Mol. Microbiol.
, vol.55
, pp. 1751-1766
-
-
Sutton, M.D.1
Duzen, J.M.2
Maul, R.W.3
-
25
-
-
32644456505
-
Specific amino acid residues in the beta sliding clamp establish a DNA polymerase usage hierarchy in Escherichia coli
-
Sutton M.D., and Duzen J.M. Specific amino acid residues in the beta sliding clamp establish a DNA polymerase usage hierarchy in Escherichia coli. DNA Repair (Amst) 5 (2006) 312-323
-
(2006)
DNA Repair (Amst)
, vol.5
, pp. 312-323
-
-
Sutton, M.D.1
Duzen, J.M.2
-
26
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
27
-
-
0037027527
-
Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes
-
Cummings L., Riley L., Black L., Souvorov A., Resenchuk S., Dondoshansky I., and Tatusova T. Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes. FEMS Microbiol. Lett. 216 (2002) 133-138
-
(2002)
FEMS Microbiol. Lett.
, vol.216
, pp. 133-138
-
-
Cummings, L.1
Riley, L.2
Black, L.3
Souvorov, A.4
Resenchuk, S.5
Dondoshansky, I.6
Tatusova, T.7
-
28
-
-
0028157366
-
2 and a trans-acting element activate transcription from one of two promoters
-
2 and a trans-acting element activate transcription from one of two promoters. J. Bacteriol. 176 (1994) 586-595
-
(1994)
J. Bacteriol.
, vol.176
, pp. 586-595
-
-
Koehler, T.M.1
Dai, Z.2
Kaufman-Yarbray, M.3
-
29
-
-
0036135592
-
Control of anthrax toxin gene expression by the transition state regulator abrB
-
Saile E., and Koehler T.M. Control of anthrax toxin gene expression by the transition state regulator abrB. J. Bacteriol. 184 (2002) 370-380
-
(2002)
J. Bacteriol.
, vol.184
, pp. 370-380
-
-
Saile, E.1
Koehler, T.M.2
-
30
-
-
9644300997
-
Beta-lactamase gene expression in a penicillin-resistant Bacillus anthracis strain
-
Chen Y., Tenover F.C., and Koehler T.M. Beta-lactamase gene expression in a penicillin-resistant Bacillus anthracis strain. Antimicrob. Agents Chemother. 48 (2004) 4873-4877
-
(2004)
Antimicrob. Agents Chemother.
, vol.48
, pp. 4873-4877
-
-
Chen, Y.1
Tenover, F.C.2
Koehler, T.M.3
-
31
-
-
34248336954
-
Mutagenesis and repair in Bacillus anthracis: the effect of mutators
-
189 (2007) 2331-2338. Erratum in J. Bacteriol.
-
Ziebell K., Aguila S., Yan Shi V., Chan A., Yang H., and Miller J.H. Mutagenesis and repair in Bacillus anthracis: the effect of mutators. J. Bacteriol. 189 (2007) 3932 189 (2007) 2331-2338. Erratum in J. Bacteriol.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 3932
-
-
Ziebell, K.1
Aguila, S.2
Yan Shi, V.3
Chan, A.4
Yang, H.5
Miller, J.H.6
-
32
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake J.W. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl. Acad. Sci. U.S.A. 88 (1991) 7160-7164
-
(1991)
Proc. Natl. Acad. Sci. U.S.A.
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
-
34
-
-
0037435421
-
Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome
-
Garibyan L., Huang T., Kim M., Wolff E., Nguyen A., Nguyen T., Diep A., Hu K., Iverson A., Yang H., and Miller J.H. Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome. DNA Repair (Amst) 2 (2003) 593-608
-
(2003)
DNA Repair (Amst)
, vol.2
, pp. 593-608
-
-
Garibyan, L.1
Huang, T.2
Kim, M.3
Wolff, E.4
Nguyen, A.5
Nguyen, T.6
Diep, A.7
Hu, K.8
Iverson, A.9
Yang, H.10
Miller, J.H.11
-
35
-
-
0032169271
-
Conservation of gene order: a fingerprint of proteins that physically interact
-
Dandekar T., Snel B., Huynen M., and Bork P. Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci. 23 (1998) 324-328
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 324-328
-
-
Dandekar, T.1
Snel, B.2
Huynen, M.3
Bork, P.4
-
36
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek R., Fonstein M., D'Souza M., Pusch G.D., and Maltsev N. The use of gene clusters to infer functional coupling. Proc. Natl. Acad. Sci. U.S.A. 96 (1999) 2896-2901
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
D'Souza, M.3
Pusch, G.D.4
Maltsev, N.5
-
38
-
-
33244454780
-
Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium
-
Argiriadi M.A., Goedken E.R., Bruck I., O'Donnell M., and Kuriyan J. Crystal structure of a DNA polymerase sliding clamp from a Gram-positive bacterium. BMC Struct. Biol. 6 (2006) 2
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 2
-
-
Argiriadi, M.A.1
Goedken, E.R.2
Bruck, I.3
O'Donnell, M.4
Kuriyan, J.5
-
39
-
-
0042161860
-
Evolutionary clues to DNA polymerase III beta clamp structural mechanisms
-
Neuwald A.F. Evolutionary clues to DNA polymerase III beta clamp structural mechanisms. Nucleic Acids Res. 31 (2003) 4503-4516
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4503-4516
-
-
Neuwald, A.F.1
-
40
-
-
33745760575
-
Ancient horizontal gene transfer can benefit phylogenetic reconstruction
-
Huang J., and Gogarten J.P. Ancient horizontal gene transfer can benefit phylogenetic reconstruction. Trends Genet. 22 (2006) 361-366
-
(2006)
Trends Genet.
, vol.22
, pp. 361-366
-
-
Huang, J.1
Gogarten, J.P.2
-
41
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
|