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Volumn 38, Issue 14, 2010, Pages 4778-4787

Global and local depletion of ternary complex limits translational elongation

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TRANSFER RNA; AMINOACYL TRANSFER RNA; ELONGATION FACTOR;

EID: 77955781203     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq196     Document Type: Article
Times cited : (68)

References (52)
  • 1
    • 0033782994 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthesis
    • Ibba,M. and Soll,D. (2000) Aminoacyl-tRNA synthesis. Annu. Rev. Biochem., 69, 617-650.
    • (2000) Annu. Rev. Biochem. , vol.69 , pp. 617-650
    • Ibba, M.1    Soll, D.2
  • 2
    • 0035252889 scopus 로고    scopus 로고
    • Ribosome fidelity: tRNA discrimination, proofreading and induced fit
    • Rodnina,M.V. and Wintermeyer,W. (2001) Ribosome fidelity: tRNA discrimination, proofreading and induced fit. Trends Biochem. Sci., 26, 124-130.
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 124-130
    • Rodnina, M.V.1    Wintermeyer, W.2
  • 3
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • Dong,H., Nilsson,L. and Kurland,C.G. (1996) Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol., 260, 649-663.
    • (1996) J. Mol. Biol. , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 4
    • 0021958933 scopus 로고
    • Codon usage and tRNA content in unicellular and multicellular organisms
    • Ikemura,T. (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol., 2, 13-34.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 13-34
    • Ikemura, T.1
  • 5
    • 62049083910 scopus 로고    scopus 로고
    • Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
    • Zhang,G., Hubalewska,M. and Ignatova,Z. (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat. Struct. Mol. Biol., 16, 274-280.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 274-280
    • Zhang, G.1    Hubalewska, M.2    Ignatova, Z.3
  • 6
    • 13444291526 scopus 로고    scopus 로고
    • Codon bias as a factor in regulating expression via translation rate in the human genome
    • Lavner,Y. and Kotlar,D. (2005) Codon bias as a factor in regulating expression via translation rate in the human genome. Gene, 345, 127-138.
    • (2005) Gene , vol.345 , pp. 127-138
    • Lavner, Y.1    Kotlar, D.2
  • 7
    • 0036908375 scopus 로고    scopus 로고
    • Distribution of rare triplets along mRNA and their relation to protein folding
    • Makhoul,C.H. and Trifonov,E.N. (2002) Distribution of rare triplets along mRNA and their relation to protein folding. J. Biomol. Struct. Dyn., 20, 413-420.
    • (2002) J. Biomol. Struct. Dyn. , vol.20 , pp. 413-420
    • Makhoul, C.H.1    Trifonov, E.N.2
  • 8
    • 0024405193 scopus 로고
    • Codon usage determines translation rate in Escherichia coli
    • Sorensen,M.A., Kurland,C.G. and Pedersen,S. (1989) Codon usage determines translation rate in Escherichia coli. J. Mol. Biol., 207, 365-377.
    • (1989) J. Mol. Biol. , vol.207 , pp. 365-377
    • Sorensen, M.A.1    Kurland, C.G.2    Pedersen, S.3
  • 9
    • 58149199728 scopus 로고    scopus 로고
    • A pause for thought along the co-translational folding pathway
    • Komar,A.A. (2009) A pause for thought along the co-translational folding pathway. Trends Biochem. Sci., 34, 16-24.
    • (2009) Trends Biochem. Sci. , vol.34 , pp. 16-24
    • Komar, A.A.1
  • 10
    • 0025297285 scopus 로고
    • Codon preferences in free-living microorganisms
    • Andersson,S.G. and Kurland,C.G. (1990) Codon preferences in free-living microorganisms. Microbiol Rev., 54, 198-210.
    • (1990) Microbiol Rev , vol.54 , pp. 198-210
    • Andersson, S.G.1    Kurland, C.G.2
  • 11
    • 0032882170 scopus 로고    scopus 로고
    • Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis
    • Kanaya,S., Yamada,Y., Kudo,Y. and Ikemura,T. (1999) Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene, 238, 143-155.
    • (1999) Gene , vol.238 , pp. 143-155
    • Kanaya, S.1    Yamada, Y.2    Kudo, Y.3    Ikemura, T.4
  • 12
    • 33846021292 scopus 로고    scopus 로고
    • Tissue-specific differences in human transfer RNA expression
    • Dittmar,K.A., Goodenbour,J.M. and Pan,T. (2006) Tissue-specific differences in human transfer RNA expression. PLoS Genet., 2, e221.
    • (2006) PLoS Genet , vol.2
    • Dittmar, K.A.1    Goodenbour, J.M.2    Pan, T.3
  • 13
    • 8744310123 scopus 로고    scopus 로고
    • Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization
    • Rocha,E.P. (2004) Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Genome Res., 14, 2279-2286.
    • (2004) Genome Res , vol.14 , pp. 2279-2286
    • Rocha, E.P.1
  • 14
    • 0024465711 scopus 로고
    • Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli
    • Bonekamp,F., Dalboge,H., Christensen,T. and Jensen,K.F. (1989) Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli. J. Bacteriol., 171, 5812-5816.
    • (1989) J. Bacteriol. , vol.171 , pp. 5812-5816
    • Bonekamp, F.1    Dalboge, H.2    Christensen, T.3    Jensen, K.F.4
  • 15
    • 0024962419 scopus 로고
    • Rates of aminoacyl-tRNA selection at 29 sense codons in vivo
    • Curran,J.F. and Yarus,M. (1989) Rates of aminoacyl-tRNA selection at 29 sense codons in vivo. J. Mol. Biol., 209, 65-77.
    • (1989) J. Mol. Biol. , vol.209 , pp. 65-77
    • Curran, J.F.1    Yarus, M.2
  • 16
    • 14644396660 scopus 로고    scopus 로고
    • Selective charging of tRNA isoacceptors induced by amino-acid starvation
    • Dittmar,K.A., Sorensen,M.A., Elf,J., Ehrenberg,M. and Pan,T. (2005) Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO Rep., 6, 151-157.
    • (2005) EMBO Rep , vol.6 , pp. 151-157
    • Dittmar, K.A.1    Sorensen, M.A.2    Elf, J.3    Ehrenberg, M.4    Pan, T.5
  • 17
    • 0038179369 scopus 로고    scopus 로고
    • Selective charging of tRNA isoacceptors explains patterns of codon usage
    • Elf,J., Nilsson,D., Tenson,T. and Ehrenberg,M. (2003) Selective charging of tRNA isoacceptors explains patterns of codon usage. Science, 300, 1718-1722.
    • (2003) Science , vol.300 , pp. 1718-1722
    • Elf, J.1    Nilsson, D.2    Tenson, T.3    Ehrenberg, M.4
  • 19
    • 34247465560 scopus 로고    scopus 로고
    • Protein mobility and diffusive barriers in Escherichia coli: consequences of osmotic stress
    • van den Bogaart,G., Hermans,N., Krasnikov,V. and Poolman,B. (2007) Protein mobility and diffusive barriers in Escherichia coli: consequences of osmotic stress. Mol. Microbiol., 64, 858-871.
    • (2007) Mol. Microbiol. , vol.64 , pp. 858-871
    • van den Bogaart, G.1    Hermans, N.2    Krasnikov, V.3    Poolman, B.4
  • 20
    • 0027318513 scopus 로고
    • Macromolecular crowding: biochemical, biophysical, and physiological consequences
    • Zimmerman,S.B. and Minton,A.P. (1993) Macromolecular crowding: biochemical, biophysical, and physiological consequences. Annu. Rev. Biophys. Biomol. Struct., 22, 27-65.
    • (1993) Annu. Rev. Biophys. Biomol. Struct. , vol.22 , pp. 27-65
    • Zimmerman, S.B.1    Minton, A.P.2
  • 21
    • 0028909948 scopus 로고
    • Translation efficiency of the human T-cell leukemia virus (HTLV-2) gag gene modulates the frequency of ribosomal frameshifting
    • Honigman,A., Falk,H., Mador,N., Rosental,T. and Panet,A. (1995) Translation efficiency of the human T-cell leukemia virus (HTLV-2) gag gene modulates the frequency of ribosomal frameshifting. Virology, 208, 312-318.
    • (1995) Virology , vol.208 , pp. 312-318
    • Honigman, A.1    Falk, H.2    Mador, N.3    Rosental, T.4    Panet, A.5
  • 23
    • 0015914976 scopus 로고
    • Turnover of polysomes in amino acid-starved Escherichia coli
    • Cozzone,A. and Donini,P. (1973) Turnover of polysomes in amino acid-starved Escherichia coli. J. Mol. Biol., 76, 149-162.
    • (1973) J. Mol. Biol. , vol.76 , pp. 149-162
    • Cozzone, A.1    Donini, P.2
  • 24
    • 0018991720 scopus 로고
    • A family of embedded Runge-Kutta formulae
    • Dormand,J.R.P. and Prince,P.J. (1980) A family of embedded Runge-Kutta formulae. J. Comp. Appl. Math., 6, 19-26.
    • (1980) J. Comp. Appl. Math. , vol.6 , pp. 19-26
    • Dormand, J.R.P.1    Prince, P.J.2
  • 25
    • 39749138785 scopus 로고    scopus 로고
    • A structural understanding of the dynamic ribosome machine
    • Steitz,T.A. (2008) A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell Biol., 9, 242-253.
    • (2008) Nat. Rev. Mol. Cell Biol. , vol.9 , pp. 242-253
    • Steitz, T.A.1
  • 27
    • 34250843749 scopus 로고    scopus 로고
    • Structural elements defining elongation factor Tu mediated suppression of codon ambiguity
    • Roy,H., Becker,H.D., Mazauric,M.H. and Kern,D. (2007) Structural elements defining elongation factor Tu mediated suppression of codon ambiguity. Nucleic Acids. Res., 35, 3420-3430.
    • (2007) Nucleic Acids. Res. , vol.35 , pp. 3420-3430
    • Roy, H.1    Becker, H.D.2    Mazauric, M.H.3    Kern, D.4
  • 28
  • 29
    • 0023928418 scopus 로고
    • Kinetic studies on the role of elongation factors 1 beta and 1 gamma in protein synthesis
    • Janssen,G.M. and Moller,W. (1988) Kinetic studies on the role of elongation factors 1 beta and 1 gamma in protein synthesis. J. Biol. Chem., 263, 1773-1778.
    • (1988) J. Biol. Chem. , vol.263 , pp. 1773-1778
    • Janssen, G.M.1    Moller, W.2
  • 30
    • 33745861301 scopus 로고    scopus 로고
    • Mg2+ and a key lysine modulate exchange activity of eukaryotic translation elongation factor 1B alpha
    • Pittman,Y.R., Valente,L., Jeppesen,M.G., Andersen,G.R., Patel,S. and Kinzy,T.G. (2006) Mg2+ and a key lysine modulate exchange activity of eukaryotic translation elongation factor 1B alpha. J. Biol. Chem., 281, 19457-19468.
    • (2006) J. Biol. Chem. , vol.281 , pp. 19457-19468
    • Pittman, Y.R.1    Valente, L.2    Jeppesen, M.G.3    Andersen, G.R.4    Patel, S.5    Kinzy, T.G.6
  • 31
    • 5144223811 scopus 로고    scopus 로고
    • Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics
    • Uter,N.T. and Perona,J.J. (2004) Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics. Proc. Natl Acad. Sci. USA, 101, 14396-14401.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 14396-14401
    • Uter, N.T.1    Perona, J.J.2
  • 32
    • 0026409389 scopus 로고
    • Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate
    • Sorensen,M.A. and Pedersen,S. (1991) Absolute in vivo translation rates of individual codons in Escherichia coli. The two glutamic acid codons GAA and GAG are translated with a threefold difference in rate. J. Mol. Biol., 222, 265-280.
    • (1991) J. Mol. Biol. , vol.222 , pp. 265-280
    • Sorensen, M.A.1    Pedersen, S.2
  • 33
    • 64549100262 scopus 로고    scopus 로고
    • Generic algorithm to predict the speed of translational elongation: Implications for protein biogenesis
    • Zhang,G. and Ignatova,Z. (2009) Generic algorithm to predict the speed of translational elongation: Implications for protein biogenesis. PLoS ONE, 4, e5036.
    • (2009) PLoS ONE , vol.4
    • Zhang, G.1    Ignatova, Z.2
  • 34
    • 0031172424 scopus 로고    scopus 로고
    • Changes of tRNA population during compensatory cell proliferation: differential expression of methionine-tRNA species
    • Kanduc,D. (1997) Changes of tRNA population during compensatory cell proliferation: differential expression of methionine-tRNA species. Arch. Biochem. Biophys., 342, 1-5.
    • (1997) Arch. Biochem. Biophys. , vol.342 , pp. 1-5
    • Kanduc, D.1
  • 35
    • 3843126332 scopus 로고    scopus 로고
    • RNA dynamics in live Escherichia coli cells
    • Golding,I. and Cox,E.C. (2004) RNA dynamics in live Escherichia coli cells. Proc Natl Acad Sci USA, 101, 11310-11315.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 11310-11315
    • Golding, I.1    Cox, E.C.2
  • 36
    • 0021243715 scopus 로고
    • The eucaryotic aminoacyl-tRNA synthetase complex: suggestions for its structure and function
    • Deutscher,M.P. (1984) The eucaryotic aminoacyl-tRNA synthetase complex: suggestions for its structure and function. J. Cell Biol., 99, 373-377.
    • (1984) J. Cell Biol. , vol.99 , pp. 373-377
    • Deutscher, M.P.1
  • 37
    • 34948856961 scopus 로고    scopus 로고
    • Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis
    • Fluitt,A., Pienaar,E. and Viljoen,H. (2007) Ribosome kinetics and aa-tRNA competition determine rate and fidelity of peptide synthesis. Comput. Biol. Chem., 31, 335-346.
    • (2007) Comput. Biol. Chem. , vol.31 , pp. 335-346
    • Fluitt, A.1    Pienaar, E.2    Viljoen, H.3
  • 38
    • 46449109015 scopus 로고    scopus 로고
    • Structure and energetics of the hydrogen-bonded backbone in protein folding
    • Bolen,D.W. and Rose,G.D. (2008) Structure and energetics of the hydrogen-bonded backbone in protein folding. Annu. Rev. Biochem., 77, 339-362.
    • (2008) Annu. Rev. Biochem. , vol.77 , pp. 339-362
    • Bolen, D.W.1    Rose, G.D.2
  • 39
    • 1242339673 scopus 로고    scopus 로고
    • Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome
    • Kothe,U., Wieden,H.J., Mohr,D. and Rodnina,M.V. (2004) Interaction of helix D of elongation factor Tu with helices 4 and 5 of protein L7/12 on the ribosome. J. Mol. Biol., 336, 1011-1021.
    • (2004) J. Mol. Biol. , vol.336 , pp. 1011-1021
    • Kothe, U.1    Wieden, H.J.2    Mohr, D.3    Rodnina, M.V.4
  • 40
    • 0029870925 scopus 로고    scopus 로고
    • Programmed translational frameshifting
    • Farabaugh,P.J. (1996) Programmed translational frameshifting. Microbiol. Rev., 60, 103-134.
    • (1996) Microbiol. Rev. , vol.60 , pp. 103-134
    • Farabaugh, P.J.1
  • 41
    • 0037492900 scopus 로고    scopus 로고
    • The rate of peptidyl-tRNA dissociation from the ribosome during minigene expression depends on the nature of the last decoding interaction
    • Cruz-Vera,L.R., Hernandez-Ramon,E., Perez-Zamorano,B. and Guarneros,G. (2003) The rate of peptidyl-tRNA dissociation from the ribosome during minigene expression depends on the nature of the last decoding interaction. J. Biol. Chem., 278, 26065-26070.
    • (2003) J. Biol. Chem. , vol.278 , pp. 26065-26070
    • Cruz-Vera, L.R.1    Hernandez-Ramon, E.2    Perez-Zamorano, B.3    Guarneros, G.4
  • 42
    • 0017115214 scopus 로고
    • Peptidyl transfer RNA dissociates during protein synthesis from ribosomes of Escherichia coli
    • Menninger,J.R. (1976) Peptidyl transfer RNA dissociates during protein synthesis from ribosomes of Escherichia coli. J. Biol. Chem., 251, 3392-3398.
    • (1976) J. Biol. Chem. , vol.251 , pp. 3392-3398
    • Menninger, J.R.1
  • 43
    • 0027104840 scopus 로고
    • Translational accuracy and the fitness of bacteria
    • Kurland,C.G. (1992) Translational accuracy and the fitness of bacteria. Annu. Rev. Genet., 26, 29-50.
    • (1992) Annu. Rev. Genet. , vol.26 , pp. 29-50
    • Kurland, C.G.1
  • 44
    • 0028073194 scopus 로고
    • Special peptidyl-tRNA molecules can promote translational frameshifting without slippage
    • Vimaladithan,A. and Farabaugh,P.J. (1994) Special peptidyl-tRNA molecules can promote translational frameshifting without slippage. Mol. Cell Biol., 14, 8107-8116.
    • (1994) Mol. Cell Biol. , vol.14 , pp. 8107-8116
    • Vimaladithan, A.1    Farabaugh, P.J.2
  • 45
    • 46149104347 scopus 로고    scopus 로고
    • Different aa-tRNAs are selected uniformly on the ribosome
    • Ledoux,S. and Uhlenbeck,O.C. (2008) Different aa-tRNAs are selected uniformly on the ribosome. Mol. Cell, 31, 114-123.
    • (2008) Mol. Cell , vol.31 , pp. 114-123
    • Ledoux, S.1    Uhlenbeck, O.C.2
  • 46
    • 0242523959 scopus 로고    scopus 로고
    • A salvage pathway for protein structures: tmRNA and trans-translation
    • Withey,J.H. and Friedman,D.I. (2003) A salvage pathway for protein structures: tmRNA and trans-translation. Annu. Rev. Microbiol., 57, 101-123.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 101-123
    • Withey, J.H.1    Friedman, D.I.2
  • 49
    • 0037134448 scopus 로고    scopus 로고
    • Transient inhibition of translation initiation by osmotic stress
    • Uesono,Y. and Toh,E.A. (2002) Transient inhibition of translation initiation by osmotic stress. J. Biol. Chem., 277, 13848-13855.
    • (2002) J. Biol. Chem. , vol.277 , pp. 13848-13855
    • Uesono, Y.1    Toh, E.A.2
  • 50
    • 0344699347 scopus 로고    scopus 로고
    • Trinucleotide expansion mutations in the cartilage oligomeric matrix protein (COMP) gene
    • Delot,E., King,L.M., Briggs,M.D., Wilcox,W.R. and Cohn,D.H. (1999) Trinucleotide expansion mutations in the cartilage oligomeric matrix protein (COMP) gene. Hum. Mol. Genet., 8, 123-128.
    • (1999) Hum. Mol. Genet. , vol.8 , pp. 123-128
    • Delot, E.1    King, L.M.2    Briggs, M.D.3    Wilcox, W.R.4    Cohn, D.H.5
  • 51
    • 65349147638 scopus 로고    scopus 로고
    • Recoding of translation in turtle mitochondrial genomes: programmed frameshift mutations and evidence of a modified genetic code
    • Russell,R.D. and Beckenbach,A.T. (2008) Recoding of translation in turtle mitochondrial genomes: programmed frameshift mutations and evidence of a modified genetic code. J. Mol. Evol., 67, 682-695.
    • (2008) J. Mol. Evol. , vol.67 , pp. 682-695
    • Russell, R.D.1    Beckenbach, A.T.2
  • 52
    • 0000516715 scopus 로고
    • Translation of the sequence AGG-AGG yields 50% ribosomal frameshift
    • Spanjaard,R.A. and van Duin,J. (1988) Translation of the sequence AGG-AGG yields 50% ribosomal frameshift. Proc. Natl Acad. Sci. USA, 85, 7967-7971.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 7967-7971
    • Spanjaard, R.A.1    van Duin, J.2


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