메뉴 건너뛰기




Volumn 56, Issue 3, 2012, Pages 502-508

cDNA-AFLP analysis reveals a set of new genes differentially expressed in cucumber root apexes in response to iron deficiency

Author keywords

calmodulin; Cucumis sativus; semiquantitative RT PCR; transcript derived fragments; transcriptomic analysis

Indexed keywords

CUCUMIS SATIVUS;

EID: 84859878462     PISSN: 00063134     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10535-012-0050-1     Document Type: Article
Times cited : (9)

References (43)
  • 1
    • 0030138199 scopus 로고    scopus 로고
    • Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development
    • Bachem, C. W. B., van der Hoeven, R. S., De Brujin, S. M., Vreugdenhil, D., Zabeau, M., Visser, R. G. F.: Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. - Plant J. 9: 745-753, 1996.
    • (1996) Plant J. , vol.9 , pp. 745-753
    • Bachem, C.W.B.1    van der Hoeven, R.S.2    de Brujin, S.M.3    Vreugdenhil, D.4    Zabeau, M.5    Visser, R.G.F.6
  • 2
    • 0001777212 scopus 로고    scopus 로고
    • Protein translocation into mitochondria: the role of TIM complexes
    • Bauer, M. F., Hofmann, S., Neupert, W., Brunner, M.: Protein translocation into mitochondria: the role of TIM complexes. - Trends Cell. Biol. 10: 25-31, 2000.
    • (2000) Trends Cell. Biol. , vol.10 , pp. 25-31
    • Bauer, M.F.1    Hofmann, S.2    Neupert, W.3    Brunner, M.4
  • 3
    • 76649134113 scopus 로고    scopus 로고
    • Comparison of three genetic similarity coefficients based on dominant markers from predominantly self-pollinating species
    • Beharav, A., Maras, M., Kitner, M., Šuštar-Vozlič, J., Sun, G. L., Doležalová, I., Lebeda, A., Meglič, V.: Comparison of three genetic similarity coefficients based on dominant markers from predominantly self-pollinating species. - Biol. Plant. 54: 54-60, 2010.
    • (2010) Biol. Plant. , vol.54 , pp. 54-60
    • Beharav, A.1    Maras, M.2    Kitner, M.3    Šuštar-Vozlič, J.4    Sun, G.L.5    Doležalová, I.6    Lebeda, A.7    Meglič, V.8
  • 5
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantization of micrograms quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M.: A rapid and sensitive method for the quantization of micrograms quantities of protein utilizing the principle of protein-dye binding. - Anal. Biochem. 72: 248-254, 1976.
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 7
    • 0035118384 scopus 로고    scopus 로고
    • Genome-wide expression analysis of plant cell cycle modulated genes
    • Breyne, P., Zabeau, M.: Genome-wide expression analysis of plant cell cycle modulated genes. - Curr. Opin. Plant Biol. 4: 136-142, 2001.
    • (2001) Curr. Opin. Plant Biol. , vol.4 , pp. 136-142
    • Breyne, P.1    Zabeau, M.2
  • 8
    • 65649150747 scopus 로고    scopus 로고
    • Early iron-deficiencyinduced transcriptional changes in Arabidopsis roots as revealed by microarray analyses
    • Buckhout, T. J., Yang, T. J., Schmidt, W.: Early iron-deficiencyinduced transcriptional changes in Arabidopsis roots as revealed by microarray analyses. - BMC Genomics 10: 147, 2009.
    • (2009) BMC Genomics , vol.10 , pp. 147
    • Buckhout, T.J.1    Yang, T.J.2    Schmidt, W.3
  • 9
    • 18444408674 scopus 로고    scopus 로고
    • The essential basic helix-loophelix protein FIT1 is required for Fe deficiency response
    • Colangelo, E. P., Guerinot, M. L.: The essential basic helix-loophelix protein FIT1 is required for Fe deficiency response. - Plant Cell 16: 3400-3412, 2004.
    • (2004) Plant Cell , vol.16 , pp. 3400-3412
    • Colangelo, E.P.1    Guerinot, M.L.2
  • 10
    • 77954019745 scopus 로고    scopus 로고
    • PCRbased molecular markers for assessment of somaclonal variation in Pinus pinea clones micropropagated in vitro
    • Cuesta, C., Ordás, R. J., Rodríguez, A. Fernández, B.: PCRbased molecular markers for assessment of somaclonal variation in Pinus pinea clones micropropagated in vitro. - Biol. Plant. 54: 435-442, 2010.
    • (2010) Biol. Plant. , vol.54 , pp. 435-442
    • Cuesta, C.1    Ordás, R.J.2    Rodríguez, A.3    Fernández, B.4
  • 11
    • 0141489216 scopus 로고    scopus 로고
    • Iron transport and signalling in plants
    • Curie, C., Briat, J. F.: Iron transport and signalling in plants. - Annu. Rev. Plant Biol. 54: 183-206, 2003.
    • (2003) Annu. Rev. Plant Biol. , vol.54 , pp. 183-206
    • Curie, C.1    Briat, J.F.2
  • 12
    • 0034536648 scopus 로고    scopus 로고
    • Phosphoenolpyruvate carboxylase in cucumber (Cucumis sativus L.) roots under iron deficiency: activity and kinetic characterisation
    • De Nisi, P., Zocchi, G.: Phosphoenolpyruvate carboxylase in cucumber (Cucumis sativus L.) roots under iron deficiency: activity and kinetic characterisation. - J. exp. Bot. 51: 1903-1909, 2000.
    • (2000) J. Exp. Bot. , vol.51 , pp. 1903-1909
    • de Nisi, P.1    Zocchi, G.2
  • 13
    • 0035845495 scopus 로고    scopus 로고
    • Plant gene expression response to Agrobacterium tumefaciens
    • Ditt, R. F., Nester, E. W., Comai, L.: Plant gene expression response to Agrobacterium tumefaciens. - Proc. nat. Acad. Sci. USA 98: 10954-10959, 2001.
    • (2001) Proc. Nat. Acad. Sci. USA , vol.98 , pp. 10954-10959
    • Ditt, R.F.1    Nester, E.W.2    Comai, L.3
  • 14
    • 78649521637 scopus 로고    scopus 로고
    • Proteomic characterization of iron deficiency response in Cucumis sativus L.roots
    • Donnini, S., Prinsi, B., Negri, A. S., Vigani, G., Espen, L., Zocchi, G.: Proteomic characterization of iron deficiency response in Cucumis sativus L. roots. - BMC Plant Biol. 10: 268, 2010.
    • (2010) BMC Plant Biol. , vol.10 , pp. 268
    • Donnini, S.1    Prinsi, B.2    Negri, A.S.3    Vigani, G.4    Espen, L.5    Zocchi, G.6
  • 15
    • 0042386354 scopus 로고    scopus 로고
    • Functional cooperation and separation of translocators in protein import into mitochondria, the double-membrane bounded organelles
    • Endo, T., Yamamoto, H., Esaki, M.: Functional cooperation and separation of translocators in protein import into mitochondria, the double-membrane bounded organelles. - J. cell. Sci. 116: 3259-3267, 2003.
    • (2003) J. Cell. Sci. , vol.116 , pp. 3259-3267
    • Endo, T.1    Yamamoto, H.2    Esaki, M.3
  • 16
    • 0034078393 scopus 로고    scopus 로고
    • Metabolic responses in cucumber (Cucumis sativus L.) root under Fedeficiency: a 31NMR in vivo study
    • Espen, L., Dell'Orto, M., De Nisi, P., Zocchi, G.: Metabolic responses in cucumber (Cucumis sativus L.) root under Fedeficiency: a 31NMR in vivo study. - Planta 210: 985-992, 2000.
    • (2000) Planta , vol.210 , pp. 985-992
    • Espen, L.1    Dell'Orto, M.2    de Nisi, P.3    Zocchi, G.4
  • 17
    • 5644282397 scopus 로고    scopus 로고
    • A sensitive transcriptome analysis method that can detect unknown transcripts
    • Nucl. Acid Res
    • Fukumura, R., Takahashi, H., Saito, T., Tsutsumi, T., Fujimori, A., Sato, S., Tatsumi, K., Araki, R., Abe, M.: A sensitive transcriptome analysis method that can detect unknown transcripts. - Nucl. Acid Res. 31 (SUPPL.): e94, 2003.
    • (2003) , vol.31 , Issue.SUPPL
    • Fukumura, R.1    Takahashi, H.2    Saito, T.3    Tsutsumi, T.4    Fujimori, A.5    Sato, S.6    Tatsumi, K.7    Araki, R.8    Abe, M.9
  • 18
    • 0032775285 scopus 로고    scopus 로고
    • High resolution fingerprinting of transcribed genes by means of a modified cDNA-AFLP method
    • Hartings, H.: High resolution fingerprinting of transcribed genes by means of a modified cDNA-AFLP method. - Maydica. 44: 179-181, 1999.
    • (1999) Maydica. , vol.44 , pp. 179-181
    • Hartings, H.1
  • 19
    • 31944434700 scopus 로고    scopus 로고
    • Genetic polymorphism and protein conformational plasticity in the calmodulin superfamily: two ways to promote multifunctionality
    • Ikura, M., Ames, J. B.: Genetic polymorphism and protein conformational plasticity in the calmodulin superfamily: two ways to promote multifunctionality. - Proc. nat. Acad. Sci. USA 103: 1159-1164, 2006.
    • (2006) Proc. Nat. Acad. Sci. USA , vol.103 , pp. 1159-1164
    • Ikura, M.1    Ames, J.B.2
  • 20
    • 0037009105 scopus 로고    scopus 로고
    • Protein import into and across the mitochondrial inner membrane: role of the TIM23 and TIM22 translocation
    • Jensen, R., Dunn, C.: Protein import into and across the mitochondrial inner membrane: role of the TIM23 and TIM22 translocation. - Biochim. biophys. Acta. 1592: 25-34, 2002.
    • (2002) Biochim. Biophys. Acta. , vol.1592 , pp. 25-34
    • Jensen, R.1    Dunn, C.2
  • 21
    • 76649131590 scopus 로고    scopus 로고
    • Development of AFLP and STS markers linked to a waterlogging tolerance in Korean soybean landraces
    • Kang, S.-Y., Lee, K. J., Lee, G.-J., Kim, J.-B., Chung, S.-J., Song, J. Y., Lee, B.-M., Kim, D. S.: Development of AFLP and STS markers linked to a waterlogging tolerance in Korean soybean landraces. - Biol. Plant. 54: 61-68, 2010.
    • (2010) Biol. Plant. , vol.54 , pp. 61-68
    • Kang, S.-Y.1    Lee, K.J.2    Lee, G.-J.3    Kim, J.-B.4    Chung, S.-J.5    Song, J.Y.6    Lee, B.-M.7    Kim, D.S.8
  • 22
    • 0034733819 scopus 로고    scopus 로고
    • Protein translocation pathways of the mitochondrion
    • Koehler, C. M.: Protein translocation pathways of the mitochondrion. - FEBS Lett. 476: 27-31, 2000.
    • (2000) FEBS Lett. , vol.476 , pp. 27-31
    • Koehler, C.M.1
  • 23
    • 0000653637 scopus 로고
    • Function of rhizodermal transfer cells in the Fe stress response mechanism of Capsicum annuum L
    • Landsberg, E. C.: Function of rhizodermal transfer cells in the Fe stress response mechanism of Capsicum annuum L. - Plant Physiol. 82: 511-517, 1986.
    • (1986) Plant Physiol. , vol.82 , pp. 511-517
    • Landsberg, E.C.1
  • 24
    • 0000235987 scopus 로고
    • Transfer cell formation in sugar beet roots induced by latent Fe deficiency
    • Landsberg, E. C.: Transfer cell formation in sugar beet roots induced by latent Fe deficiency. - Plant Soil. 165: 197-205, 1994.
    • (1994) Plant Soil. , vol.165 , pp. 197-205
    • Landsberg, E.C.1
  • 25
    • 46049119887 scopus 로고    scopus 로고
    • Proteomic response to iron deficiency in tomato root
    • Li, J., Wu, X. D., Hao, S. T., Wang, X. J., Ling, H. Q.: Proteomic response to iron deficiency in tomato root. - Proteomics 8: 2299-2311, 2008.
    • (2008) Proteomics , vol.8 , pp. 2299-2311
    • Li, J.1    Wu, X.D.2    Hao, S.T.3    Wang, X.J.4    Ling, H.Q.5
  • 26
    • 1342265924 scopus 로고    scopus 로고
    • A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction
    • Lister, R., Chew, O., Lee, M. N., Heazlewood, J. L., Clifton, R., Parker, K., Millar, A. H., Whelan, J.: A transcriptomic and proteomic characterization of the Arabidopsis mitochondrial protein import apparatus and its response to mitochondrial dysfunction. - Plant Physiol. 134: 777-789, 2004.
    • (2004) Plant Physiol. , vol.134 , pp. 777-789
    • Lister, R.1    Chew, O.2    Lee, M.N.3    Heazlewood, J.L.4    Clifton, R.5    Parker, K.6    Millar, A.H.7    Whelan, J.8
  • 29
    • 0000644642 scopus 로고
    • Rapid method for measuring changes in pH and reducing process along roots of intact plants
    • Marschner, H., Römheld, V., Ossenberg-Neuhaus, H.: Rapid method for measuring changes in pH and reducing process along roots of intact plants. - Z. Pflanzenphysiol. 105: 407-416, 1982.
    • (1982) Z. Pflanzenphysiol. , vol.105 , pp. 407-416
    • Marschner, H.1    Römheld, V.2    Ossenberg-Neuhaus, H.3
  • 31
    • 0033119547 scopus 로고    scopus 로고
    • Localization of pyrophosphatase in membranes of cauliflower inflorescence cells
    • Ratajczak, R., Hinz, G., Robinson, D. G.: Localization of pyrophosphatase in membranes of cauliflower inflorescence cells. - Planta 208: 205-211, 1999.
    • (1999) Planta , vol.208 , pp. 205-211
    • Ratajczak, R.1    Hinz, G.2    Robinson, D.G.3
  • 32
    • 0037459118 scopus 로고    scopus 로고
    • Insertion of hydrophobic membrane proteins into the inner mitochondrial membrane - a guided tour
    • Rehling, P., Pfanner, N., Meisinger, C.: Insertion of hydrophobic membrane proteins into the inner mitochondrial membrane - a guided tour. - J. mol. Biol. 326: 639-657, 2003.
    • (2003) J. Mol. Biol. , vol.326 , pp. 639-657
    • Rehling, P.1    Pfanner, N.2    Meisinger, C.3
  • 33
    • 76649091266 scopus 로고    scopus 로고
    • Genetic diversity in important members of Cucurbitaceae using isozyme, RAPD and ISSR markers
    • Sikdar, B., Bhattacharya, M., Mukherjee, A., Banerjee, A., Ghosh, E., Ghosh, B., Roy, S. C.: Genetic diversity in important members of Cucurbitaceae using isozyme, RAPD and ISSR markers. - Biol. Plant. 54: 135-140, 2010.
    • (2010) Biol. Plant. , vol.54 , pp. 135-140
    • Sikdar, B.1    Bhattacharya, M.2    Mukherjee, A.3    Banerjee, A.4    Ghosh, E.5    Ghosh, B.6    Roy, S.C.7
  • 35
    • 0031815854 scopus 로고    scopus 로고
    • Soluble NSF-attachment proteins
    • Stenbeck, G.: Soluble NSF-attachment proteins. - Int. J. Biochem. cell. Biol. 30: 573-577, 1998.
    • (1998) Int. J. Biochem. Cell. Biol. , vol.30 , pp. 573-577
    • Stenbeck, G.1
  • 36
    • 0035201585 scopus 로고    scopus 로고
    • Response of Arabidopsis to iron deficiency stress as revealed by microarray analysis
    • Thimm, O., Essigmann, B., Kloska, S., Altmann, T., Buckhout, T. J.: Response of Arabidopsis to iron deficiency stress as revealed by microarray analysis. - Plant Physiol. 127: 1030-1043, 2001.
    • (2001) Plant Physiol. , vol.127 , pp. 1030-1043
    • Thimm, O.1    Essigmann, B.2    Kloska, S.3    Altmann, T.4    Buckhout, T.J.5
  • 37
    • 4444309237 scopus 로고    scopus 로고
    • Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells
    • Uemura, T., Ueda, T., Ohniwa, R. L., Nakano, A., Takeyasu, K., Sato, M. H.: Systematic analysis of SNARE molecules in Arabidopsis: dissection of the post-Golgi network in plant cells. - Cell Struct. Funct. 29: 49-65, 2004.
    • (2004) Cell Struct. Funct. , vol.29 , pp. 49-65
    • Uemura, T.1    Ueda, T.2    Ohniwa, R.L.3    Nakano, A.4    Takeyasu, K.5    Sato, M.H.6
  • 38
    • 61649091369 scopus 로고    scopus 로고
    • Iron availability affects the function of mitochondria in cucumber roots
    • Vigani, G., Maffi, D., Zocchi, G.: Iron availability affects the function of mitochondria in cucumber roots. - New Phytol. 182: 127-136, 2009.
    • (2009) New Phytol. , vol.182 , pp. 127-136
    • Vigani, G.1    Maffi, D.2    Zocchi, G.3
  • 39
    • 67549098281 scopus 로고    scopus 로고
    • The fate and the role of mitochondria in Fe deficient roots of Strategy I plants
    • Vigani, G., Zocchi, G.: The fate and the role of mitochondria in Fe deficient roots of Strategy I plants. - Plant Signal. Behaviour 4: 375-379, 2009.
    • (2009) Plant Signal. Behaviour , vol.4 , pp. 375-379
    • Vigani, G.1    Zocchi, G.2
  • 40
    • 77950189767 scopus 로고    scopus 로고
    • Effect of Fe deficiency on mitochondrial alternative NAD(P)H dehydrogenases in cucumber roots
    • Vigani, G., Zocchi, G.: Effect of Fe deficiency on mitochondrial alternative NAD(P)H dehydrogenases in cucumber roots. - J. Plant Physiol. 167: 666-669, 2010.
    • (2010) J. Plant Physiol. , vol.167 , pp. 666-669
    • Vigani, G.1    Zocchi, G.2
  • 41
    • 34250791351 scopus 로고    scopus 로고
    • AFLP-based transcript profiling (cDNA-AFLP) for genome-wide expression analysis
    • Vuylsteke, M., Peleman, J. D., van Eijk, M. J. T.: AFLP-based transcript profiling (cDNA-AFLP) for genome-wide expression analysis. - Nat. Protoc. 2: 1399-1413, 2007.
    • (2007) Nat. Protoc. , vol.2 , pp. 1399-1413
    • Vuylsteke, M.1    Peleman, J.D.2    van Eijk, M.J.T.3
  • 43
    • 34247267003 scopus 로고    scopus 로고
    • Metabolic changes in iron-stressed dicotyledonous plants
    • L. L. Barton, J. Abadía (Eds.), Dordrecht: Springer
    • Zocchi, G.: Metabolic changes in iron-stressed dicotyledonous plants. - In: Barton, L. L., Abadía, J. (ed.): Iron Nutrition in Plants and Rhizospheric Microorganisms. Pp 359-370. Springer, Dordrecht 2006.
    • (2006) Iron Nutrition in Plants and Rhizospheric Microorganisms , pp. 359-370
    • Zocchi, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.