Genetic diversity in important members of Cucurbitaceae using isozyme, RAPD and ISSR markers

Biologia Plantarum

Volumn 54, Issue 1, 2010, Pages 135-140

  Sikdar, B ^a   Bhattacharya, M ^b   Mukherjee, A ^c   Banerjee, A ^b   Ghosh, E ^b   Ghosh, B ^b   Roy, S C ^b  

^a University of Rajsahi   (Bangladesh)

^b UNIVERSITY OF CALCUTTA   (India)

^c Dinabandhu Mahavidyalaya ^*  (India)

Author keywords

Cluster analysis; Jaccard similarity coefficient; Molecular marker; Primer

Indexed keywords

CUCUMIS SATIVUS; CUCURBITACEAE;

EID: 76649091266     PISSN: 00063134     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10535-010-0021-3     Document Type: Article

References (40)

1. Ajibade, S. R., Weeden, N. F., Chite, S. M.: Inter simple sequence repeat analysis of genetic relationships in the genus Vigna. - Euphytica 111: 47-55, 2000.
2. Apavatjrut, P., Anuntalabhochai, S., Sirirugsa, P. Alisi, C.: Molecular markers in the identification of some early flowering Curcuma L. (Zingiberaceae) species. - Ann. Bot. 84: 529-534, 1999.
3. Aradhya, M. K., Kee, L. K., Zee, F. T., Manshardt, R. M.: Genetic variability in Macadamia. - Genet. Resour. Crop Evolut. 45: 19-32, 1998.
4. Arnau, G., Lallemand, J., Bourgoin, M.: Fast and reliable strawberry cultivar identification using inter simple sequence repeat (ISSR) amplification. - Euphytica 129: 69-79, 2002.
5. Blair, M. W., Panaud, O., McCouch, S. R.: Inter-simple sequence repeat (ISSR) amplification for analysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L). - Theor. appl. Genet 98: 780-792, 1999.
6. Booy, G., van Raamsdonk, L. W. D.: Variation in the enzyme esterase within and between Tulipa species; usefulness for the analysis of genetic relationships at different taxonomical levels. - Biochem. Syst. Ecol. 26: 199-224, 1998.
7. Brown-Guedira, G. L., Thompson, J. A., Nelson, R. L., Warburton, M. L.: Evaluation of genetic diversity of soybean introductions and North American ancestors using RAPD and SSR markers. - Crop Sci. 40: 815-823, 2000.
8. Das, M., Bhattacharya, S., Basak J., Pal A.: Phylogenetic relationships among the bamboo species as revealed by morphological characters and polymorphism analyses. - Biol. Plant. 51: 667-672, 2007.
9. Das, S., Mukherjee, K. K.: Morphological and biochemical investigations on Ipomoea seedlings and their species interrelationships. - Ann. Bot. 79: 565-571, 1997.
10. Depeiges, A., Goubely, C., Lenoir, A., Cocherel, S., Picard, G., Raynal, M., Grellet, F., Delseny, M.: Identification of the most represented repeated motifs in Arabidopsis thaliana microsatellite loci. - Theor. appl. Genet. 91: 160-168, 1995.
11. Dikshit, H. K., Jhang, T., Singh, N. K., Koundal, K. R., Bansal, K. C., Chandra, N., Tickoo, J. L., Sharma, T. R.: Genetic differentiation of Vigna species by RAPD, URP and SSR markers. - Biol. Plant. 51: 451-457, 2007.
12. Doyle J. J., Doyle J. L.: A rapid DNA isolation procedure from small quantities of fresh leaf tissues. - Phytochem. Bull. 19: 11-15, 1987.
13. Fernandez, M. E., Figueiras, A. M. Benito, C.: The use of ISSR and RAPD marker for detecting DNA polymorphism, genotype identification and genetic diversity among barley cultivars with known origin. - Theor. appl. Genet. 104: 845-851, 2002.
14. Hauser, L. A. Crovello, T. J.: Numerical analysis of genetic relationships in Thelypodieae (Brassicaceae). - Syst. Bot. 7: 249-268, 1982.
15. Helm, M. A., Hemleben, V.: Characterization of a new prominent satellite DNA of Cucumis metuliferus and differential distribution of satellite DNA in cultivated and wild species of Cucumis and in related genera of Cucurbitaceae. Euphytica 94: 219-226, 1997.
16. Hoey, B. K., Crowe, K. R., Jones, V. M.: A phylogenetic analysis of Pisum sativum based on morphological characters and allozyme and RAPD markers. - Theor. Appl. Genet. 92: 92-100, 1996.
17. Joshi, S. P., Gupta, V. S., Aggarwal, R. K., Ranjekar, P. K. Brar, D. S.: Genetic diversity and phylogenetic relationship as revealed by inter-simple sequence repeat (ISSR) polymorphism in the genus Oryza. - Theor. appl. Genet. 100: 1311-1320, 2000.
18. Kaga, A. N., Tomooka, N., Egawa, Y., Hosaka, K., Kamijima, O.: Species relationships in subgenus Ceratotropis (genus Vigna) as revealed by RAPD analysis. - Euphytica 88: 17-24, 1996.
19. Khasa, P. D., Dancik, B. P.: Rapid identification of white- Engelmann spruce species by RAPD markers. - Theor. appl. Genet. 92: 46-52, 1996.
20. Lakhanpaul, S., Velayudhan, K. C., Bhat, K. V.: Analysis of genetic diversity in Indian taro (Colocasia esculenta Schott) using random amplified polymorphic DNA (RAPD) markers. - Genet. Resour. Crop Evolut. 50: 603-609, 2003.
21. Lange, O., Schifino-Wittmann, M. T.: Isozyme variation in wild and cultivated species of the genus Trifolium L. (Leguminosae). - Ann. Bot. 86: 339-345, 2000.
22. Levi, A., Thomas, C. E., Simmons, A. M., Thies, J. A.: Analysis based on RAPD and ISSR markers reveals closer similarities among Citrullus and Cucumis species than with Praecitrullus fistulosus (Stocks) Pangalo. - Genet. Resour. Crop Evolut. 52: 465-472, 2005.
23. Loarce, Y., Gallego, R. Ferrer, E.: A comparative analysis of genetic relationships between rye cultivars using RFLP and RAPD markers. - Euphytica 88: 107-115, 1996.
24. Lowry, O. H., Rosebrough, N. J., Farr, A. L., Randall, R. J.: Protein measurement with the Folin-Phenol reagents. J. biol. Chem. 193: 265-275, 1951.
25. Mantel, N.: The detection of disease clustering and generalized regression approach. - Cancer Res. 27: 209-220, 1967.
26. Moreno, S., Martin, J. P., Ortiz, J. M.: Inter-simple sequence repeats PCR for characterization of closely related grapevine germplasm. - Euphytica 101: 117-125, 1998.
27. Nebauer, S. G., del Castillo-Agudo, L., Segura, J.: RAPD variation within and among natural populations of outcrossing willow-leaved foxglove (Digitalis obscura L.). - Theor. appl. Genet. 98: 985-994, 1999.
28. Nei, M.: Estimation of average heterozygosity and genetic distance from a small number of individual. - Genetics 89: 583-590, 1978.
29. Paterson, A. H., Tanksley, S. D., Sorrells, M. E.: DNA markers in plant improvement. - Adv. Agron. 46: 39-90, 1991.
30. Ray, T., Roy, S. C.: Phylogenetic relationships between members of Amaranthaceae and Chenopodiaceae of lower gangetic plains using RAPD and ISSR markers. - Bangladesh J. Bot. 36: 21-28, 2007.
31. Rohlf, F. J.: NTSYS-pc: Numerical Taxonomy and Multivariate Analysis System. - Exeter Software, Setauket - New York 2000.
32. Sanjur, O. I., Piperno, D. R., Andres, T. C., Wessel-Beaver L.: Phylogenetic relationships among domesticated and wild species of Cucurbita (Cucurbitaceae) inferred from a mitochondrial gene: Implications for crop plant evolution and areas of origin. - Proc. nat. Acad. Sci. USA 99: 535-540, 2002.
33. Santalla, M., Power, J. B., Davey, M. R.: Genetic diversity in mungbean germplasm revealed by RAPD markers. - Plant Breed. 117: 473-478, 1998.
34. Skroch, P. W., Dos Santos, J. B., Nienhuis, J.: Genetic relationships among Phaseolus vulgaris genotypes based on RAPD marker data. - Annu. Rep. Bean Improv. Coop. 35: 23-24, 1992.
35. Soller, M., Beckmann, J. S.: Genetic polymorphism in varietal identification and genetic improvement. - Theor. appl. Genet. 67: 25-33, 1983.
36. Souframanien, J., Gopalakrishna, T.: A comparative analysis of genetic diversity in blackgram genotypes using RAPD and ISSR markers. - Theor. appl. Genet. 109: 1687-1693, 2004.
37. Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalaski, J. A., Tingey, S. V.: DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. - Nucleic Acids Res. 18: 6531-6535, 1990.
38. Yang, R. W., Zhou, C. B., Ding, Y. H., Zheng, Y. L., Zhang, L.: Relationships among Leymus species assessed by RAPD markers. - Biol. Plant. 52(2) 237-241, 2008.
39. Yao, H., Zhao, Y., Chen, D. F., Chen, J. K., Zhou, T. S.: ISSR primer screening and preliminary evaluation of genetic diversity in wild populations of Glycyrrhiza uralensis. - Biol. Plant. 52: 117-120, 2008.
40. Zietkiewicz, E., Rafalski, A., Labuda, D.: Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. - Genomics 20: 176-183, 1994.