Identification of genes involved in a water stress response in timothy and mapping of orthologous loci in perennial ryegrass

Biologia Plantarum

Volumn 56, Issue 3, 2012, Pages 473-483

  Jonaviciene K ^a   Studer, B ^b   Asp, T ^b   Jensen, L B ^c   Paplauskiene V ^a   Lazauskas, S ^a   Brazauskas, G ^a  

^a INSTITUTE OF AGRICULTURE   (Lithuania)

^b DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

^c Roche Diagnostics A/S   (Denmark)

Author keywords

cDNA AFLP; chlorophyll fluorescence; high resolution melting curve analysis; linkage mapping; Lolium perenne; Phleum bertolonii; Phleum phleoides; Phleum pratense; RWC

Indexed keywords

LOLIUM PERENNE; PHLEUM; PHLEUM BERTOLONII; PHLEUM PHLEOIDES; PHLEUM PRATENSE; POACEAE;

EID: 84859847182     PISSN: 00063134     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10535-012-0110-6     Document Type: Article

References (54)

1. Alm, V., Fang, C., Busso, C. S., Devos, K. M., Vollan, K., Grieg, Z. Rognli O. A.: A linkage map of meadow fescue (Festuca pratensis Huds.) and comparative mapping with other Poaceae species. - Theor. appl. Genet. 108: 25-40, 2003.
2. Alm, V., Busso, C. S., Ergon, Å., Rudi, H., Larsen, A., Humphreys, M., Rognli, O. A.: QTL analyses and comparative genetic mapping of frost tolerance, winter survival and drought tolerance in meadow fescue (Festuca pratensis Huds.). - Theor. appl. Genet. 123: 369-382, 2011.
3. Anami, S., De Block, M., Machuka, J., van Lijsebettens, M.: Molecular improvement of tropical maize for drought stress tolerance in Sub-Saharan Africa. - Crit. Rev. Plant Sci. 28: 16-35, 2009.
4. Araus, J. L., Slafer G. A., Reynolds, M. P., Royo, C.: Plant breeding and drought in C3 cereals: what should we breed for? - Ann. Bot. 89: 925-940, 2002.
5. Bachem, C. W. B., van der Hoeven, R. S. M., De Bruijn, S. M., Vreugdenhil, D., Zabeau, M., Visser, R. G. F.: Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. - Plant J. 9: 745-753, 1996.
6. Bachem, C. W. B., Oomen, R. J. F., Visser, R. G. F.: Transcript imaging with cDNA-AFLP: a step-by-step protocol. - Plant mol. Biol. Rep. 16: 157-173, 1998.
7. Bray, E. A., Bailey-Serres, J., Weretilnyk, E.: Responses to abiotic stresses. - In: Gruissem, W., Buchannan, B., Jones, R. (ed.): Biochemistry and Molecular Biology of Plants. Pp. 1158-1203. American Society of Plant Physiologists, Rockville 2000.
8. Cai, Q., Bullen, M. R.: Analysis of genome-specific sequences in Phleum species: identification and use for study of genomic relationships. - Theor. appl. Genet. 88: 831-837, 1994.
9. Champoux, M. C., Wang, G., Sarkarung, S., Mackill, D. J. O., Toole, J. C., Huang, N., McCouch, S. R.: Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. - Theor. appl. Genet. 90: 969-981, 1995.
10. Ceccarelli, S., Grando, S.: Drought as a challenge for the plant breeder. - Plant Growth Regul. 20: 149-155, 1996.
11. Chae, L., Sudat, S., Dudoit, S., Zhu, T., Luan, S.: Diverse transcriptional programs associated with environmental stress and hormones in the Arabidopsis receptor-like kinase gene family. - Mol. Plant 2: 84-107, 2009.
12. Chen, J., Burke, J. J., Velten, J., Xinet, Z.: FtsH11 protease plays a critical role in Arabidopsis thermotolerance. - Plant J. 48: 73-84, 2006.
13. Crawford, N. M.: Mechanism for nitric oxide synthesis in plants. - J. exp. Bot. 57: 471-478, 2006.
14. Cushman, J. C., Bohnert, H. J.: Genomic approaches to plant stress tolerance. - Curr. Opin. Plant Biol. 3: 117-124, 2000.
15. Devos, K. M.: Updating the 'Crop Circle'. - Curr. Opin. Plant Biol. 8: 155-162, 2005.
16. Fernandes, J., Morrow, D. J., Casati, P., Walbotet, V.: Distinctive transcriptome responses to adverse environmental conditions in Zea mays L. - Plant Biotechnol. J. 6: 782-798, 2008.
17. Farrar, K., Asp, T., Lübberstedt, T., Xu, M., Thomas, A. M., Christiansen, C., Humphreys, M. O., Donnison, I. S.: Construction of two Lolium perenne BAC libraries and identification of BACs containing candidate genes for disease resistance and forage quality. - Mol. Breed. 19: 15-23, 2007.
18. Flower, D. J., Ludlow, M. M.: Contribution of osmotic adjustment to the dehydration tolerance of water stressed pigeonpea (Cajanus cajan (L.) Mill sp.) leaves. - Plant Cell Environ. 9: 33-40, 1986.
19. Hazen, S. P., Pathan, M. S., Sanchez, A., Baxter, I., Dunn, M., Estes, B., Chang, H. S., Zhu, T., Kreps, J. A., Nguyen, H. T.: Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array. - Funct. Integr. Genome 5: 104-116, 2005.
20. Hemamalini, G. S., Shashidhar, H. E., Hittalmani, S.: Molecular marker assisted tagging of morphological and physiological traits under two contrasting moisture regimes at peak vegetative stage in rice (Oryza sativa L.). - Euphytica 112: 69-78, 2000.
21. Hill, T., Lewicki, P.: Statistics Methods and Applications. - StatSoft, Tulsa, 2007.
22. Hubbard, C. E. (ed.): Grasses. - Penguin Books, London 1992.
23. Humphreys, J., Harper, J. A., Armstead, I. P., Humphreys, M. W.: Introgression-mapping of genes for drought resistance transferred from Festuca arundinacea var. glaucescens into Lolium multiflorum. - Theor. appl. Genet. 110: 579-587, 2005.
24. Ito, Y., Katsura, K., Maruyama, K., Taji, T., Kobayashi, M., Seki, M., Shinozaki, K., Yamaguchi-Shinozaki K.: Functional analysis of rice DREB1/CBF-type transcription factors involved in cold responsive gene expression in transgenic rice. - Plant Cell Physiol. 47: 141-153, 2006.
25. Jensen, L. B., Andersen, J. R., Frei, U., Xing, Y., Taylor, C., Holm, P. B., Lübberstedt, T.: QTL mapping of vernalization response in perennial ryegrass (Lolium perenne L.) reveals co-location with an orthologue of wheat VRN1. - Theor. appl. Genet. 110: 527-536, 2005.
26. Jones, E. S., Mahoney, N. L., Hayward, M. D., Armstead, I. P., Jones, J. G., Humphreys, M. O., King, I. P., Kishida, T., Yamada, T., Balfourier, F., Charmet, G., Forster, J. W.: An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes. - Genome 45: 282-295, 2002.
27. Kakeda, K., Ibuki, T., Suzuki, J., Tadano, H., Kurita, Y., Hanai, Y., Kowyama, Y.: Molecular and genetic characterization of the S locus in Hordeum bulbosum L., a wild selfincompatible species related to cultivated barley. - Mol. Genet. Genom. 280: 509-519, 2008.
28. Kurek, I., Chang, T. K., Bertain, S. M., Madrigal, A., Liu, L., Lassner, M. W., Zhu, G.: Enhanced thermostability of Arabidopsis rubisco activase improves photosynthesis and growth rates under moderate heat stress. - Plant Cell 19: 3230-3241, 2007.
29. Lemežienė, N., Kanapeckas, J., Tarakanovas, P., Nekrošas, S.: Analysis of dry matter yield structure of forage grasses. - Plant Soil Environ. 50: 277-282, 2004.
30. Maliepaard, C., Jansen, J., van Ooijen, J. W.: Linkage analysis in a full-sib family of an outbreeding plant species: overview and consequences for applications. - Genet. Res. 70: 237-250, 1997.
31. Meehl, G. A., Stocker, T. F., Collins, W. D., Friedlingstein, P., Gaye, A. T., Gregory, J. M., Kitoh, A., Knutti, R., Murphy, J. M., Noda, A., Raper, S. C. B., Watterson, I. G., Weaver, A. J., Zhao Z.-C.: Global climate projections. - In: Solomon, S. D., Qin, D., Manning, M., Chen, Z., Marquis, M., Averyt, K. B., Tignor M., Miller H. L. (ed.): Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Pp. 749-845. Cambridge University Press, Cambridge 2007.
32. Meskiene, I., Bogre, L., Glaser, W., Balog, J., Brandstotter, M., Zwerger, K., Ammerer, G., Hirt, H.: MP2C, a plant protein phosphatase 2C, functions as a negative regulator of mitogen-activated protein kinase pathways in yeast and plants. - Proc. nat. Acad. Sci. USA 95: 1938-1943, 1998.
33. Mizusava, K., Masuda, S., Ohta, H.: Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana. - Planta 228: 553-562, 2008.
34. Rechsteiner, M. P., Widmer, F., Kölliker, R.: Expression profiling of Italian ryegrass (Lolium multiflorum Lam.) during infection with the bacterial wilt inducing pathogen Xanthomonas translucens pv. Graminis. - Plant Breed. 125: 43-51, 2006.
35. Rodrìguez-Milla, M. A., Salinas, J.: Brefoldins 3 and 5 play an essential role in Arabidopsis tolerance to salt stress. - Mol. Plant 2: 526-534, 2009.
36. Roháček, K.: Chlorophyll fluorescence parameters: the definitions, photosynthetic meaning, and mutual relationships. - Photosynthetica 40: 13-29, 2002.
37. Rozen, S., Skaletsky, H. J.: Primer3 on the www for general users and for biologist programmers. - Meth. mol. Biol. 132: 365-368, 2000.
38. Schejbel, B., Jensen, L. B., Asp, T., Xing, Y., Lübberstedt, T.: Mapping of QTL for resistance to powdery mildew and resistance gene analogues in perennial ryegrass (Lolium perenne L.). - Plant Breed. 127: 368-375, 2008.
39. Schejbel, B., Jensen, L. B., Xing, Y., Lübberstedt, T.: QTL analysis of crown rust resistance in perennial ryegrass under conditions of natural and artificial infection. - Plant Breed. 126: 347-352, 2007.
40. Shulaev, V., Cortes, D., Miller G., Mittler, R.: Metabolomics for plant stress response. - Physiol. Plant. 132: 199-208, 2008.
41. Studer, B., Jensen, L. B., Fiil, A., Asp, T.: "Blind" mapping of genic DNA sequence polymorphisms in Lolium perenne L. by high resolution melting curve analysis. - Mol. Breed. 24: 191-199, 2009.
42. Studer, B., Jensen, L. B., Hentrup, S., Brazauskas, G., Kölliker, R., Lübberstedt, T.: Genetic characterisation of seed yield and fertility traits in perennial ryegrass (Lolium perenne L.). - Theor. appl. Genet. 117: 781-791, 2008.
43. Studer, B., Kölliker, R., Muylle, H., Asp, T., Frei, U., Roldán-Ruiz, I., Barre, P., Tomaszewski, C., Meally, H., Barth, S., Skøt, L., Armstead, I. P., Dolstra, O., Lübberstedt, T.: ESTderived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.). - BMC Plant Biol. 10: 177-187, 2010.
44. Su, C.-F., Wang, Y.-C., Hsieh, T.-H., Lu, C.-A., Tseng, T.-H., Yu, S.-M.: A novel MYBS3-dependent pathway confers cold tolerance in rice. - Plant Physiol. 153: 145-158, 2010.
45. Tabaeizadeh, Z.: Drought-induced responses in plant cells. - Int. Rev. Cytol. 182: 193-247, 1998.
46. Turner, L. B., Cairns, A. J., Armstead, I. P., Thomas, H., Humphreys, M. W., Humphreys, M. O.: Does fructan have a functional role in physiological traits? Investigation by quantitative trait locus mapping. - New Phytol. 179: 765-775, 2008.
47. rd International Symposium on Agriculture. Pp. 650-654. Opatija 2008.
48. van Daele, I., van Bockstaele, E., Martens, C., Roldán-Ruiz, I.: Identification of transcribed derived fragments involved in self-incompatibility in perennial ryegrass (Lolium perenne L.) using cDNA-AFLP. - Euphytica. 163: 67-80, 2008.
49. van Ooijen, J. W. (ed.): JoinMap® 4, Software for the Calculation of Genetic Linkage Maps in Experimental Populations. - Kyazma B. V., Wageningen 2006.
50. Wang, J. P., Bughrara, S. S.: Monitoring of gene expression profiles and identification of candidate genes involved in drought responses in Festuca mairei. - Mol. Genet. Genom. 277: 571-587, 2007.
51. Wang, J. P., Bughrara S. S.: Evaluation of drought tolerance for Atlas fescue, perennial ryegrass, and their progeny. - Euphytica 164: 113-122, 2008.
52. White, R. H., Engelke, M. C., Morton, S. J., Ruemmele, B. A.: Competitive turgor maintenance in tall fescue. - Crop Sci. 32: 251-256, 1992.
53. Yamaguchi-Shinozaki K., Shinozaki, K.: Organization of cisacting regulatory elements in osmotic- and cold-stressresponsive promoters. - Trends. Plant Sci. 10: 88-94, 2005.
54. Židonytė, J.: Timothy. - In: Lazauskas, J., Dapkus, R. (ed.): Lauko augalu{ogonek} selekcija Lietuvoje. [Plant Breeding in Lithuania]. Pp. 164-169. Mokslas, Vilnius 1992 [In Lithuanian].