Molecular marker assisted tagging of morphological and physiological traits under two contrasting moisture regimes at peak vegetative stage in rice (Oryza sativa L.)

Euphytica

Volumn 112, Issue 1, 2000, Pages 69-78

  Hemamalini, G S ^a   Shashidhar, H E ^a   Hittalmani, Shailaja ^a  

^a UNIVERSITY OF AGRICULTURAL SCIENCES   (India)

Author keywords

Drought resistance; QTL mapping; RFLP markers; Rice; Root traits; Vegetative stage

Indexed keywords

CHROMOSOMAL LOCALIZATION; DNA FLANKING REGION; GENE LOCUS; GENETIC CROSS; GENETIC REGULATION; GENETIC TRAIT; HAPLOIDY; MOISTURE; PLANT GROWTH; PLANT HEIGHT; QUANTITATIVE TRAIT; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE; ROOT MORPHOLOGY;

EID: 0034113866     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1003854224905     Document Type: Article

References (54)

1. Ali, L., 1999. Mapping quantitative trait loci for root traits related to drought resistance in rice (Oryza sativa L.) using AFLP markers. PhD Dissertation, Texas Tech University, Lubbock, USA.
2. Aragon, E.L. & S.K. DeDatta, 1982. Drought response of rice at different irrigation levels using line source sprinkler system. Irrig Sci 3: 63-73.
3. Arraudeau, M.A., 1989. Breeding strategies for drought resistance. In: F.W.G Baker (Ed.), Drought Resistance in Cereals, pp. 107-116. CAB International, Wallingford, UK.
4. Austin, D.F. & M. Lee, 1998. Detection of quantitative trait loci for grain yield and yield components in maize across generations in stress and nonstress environments. Crop Sci 38: 1296-1308.
5. Basten, C.J., B.Z. Zhao & S.W. Bruce, 1996. QTL Cartographer: a suite of programs for mapping QTL. Abstracts. Plant Genome IV International Conference on status of plant genome research, San Diego. Jan 14-18.
6. Beavis, W.D. & P. Keim, 1996. Identification of QTL that are affected by the environment. In: M.S. Kang & H.G. Hugh (Eds), New Perspective on Genotype-by-Enviroment interactions. CRC Press, Inc., Boca Raton, FL, USA.
7. Bidinger, F.R. & J.R. Witcombe, 1989. Evaluation of specific drought avoidance as selection criteria for improvement of drought resistance. In: F.W.G. Baker (Ed.), Drought Resistance in Cereals, pp. 151-164. CAB International, Wallingford, UK,
8. Blum, A., 1982. Evidence of genetic variability in drought resistance in rice and its implication in plant breeding. In: Drought Resistance in Crops with Special Emphasis on Rice, pp. 52-70. Los Banos, International Rice Research Institute, Philippines.
9. Blum, A., 1989. Breeding for drought resistance. In: H.G. Jones, T.J. Flowers & M.B. Jones (Eds), Plants under Stress-Biochemistry, Physiology and Ecology and their Application to Plant Improvement, pp. 211-216. Cambridge University Press, Cambridge.
10. Brady, N.C., 1985. The nature and properties of soils. MacMillan publishing company, New York.
11. Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J.Z. Xiao, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch & S.D. Tanksley, 1994. Saturated molecular map of the rice genome based on an interspecific backcross population. Genetics 138: 1251-1274.
12. Ceccarelli, S., 1987. Yield potential and drought tolerance of segregating populations of barley in contrasting environments. Euphytica 36: 265-273.
13. Ceccarelli, S. & S. Grando, 1993. From conventional plant breeding to molecular biology. International Crop Science I, Crop Science Society of America, Inc. Madison, WI 53711, USA, pp. 533-538.
14. Champoux, M.C., G. Wang, S.S. Sarkarung, D.J. Mackill, J.C. O'Toole, N. Huang & S.R. McCouch, 1995. Locating genes associated with root morphology and drought avoidance in rice via linkage to molecular markers. Theor Appl Genet 90: 969-981.
15. Chen, X., S. Temykh, Y Xu, Y.G. Cho & S.R. McCouch, 1997. Development of a microsatellite framework map providing genomewide coverage in rice (Oryza sativa L.). Theor Appl Genet 95: 553-567.
16. Cho, Y.G., M.Y. Eun, S.R. McCouch & Y.A. Chae, 1994. The semi-dwarf gene, sd-1, of rice (Oryza sativa L.) II. Molecular mapping and marker assisted selection. Theor Appl Genet 90: 54-59.
17. Chopra, R.K. & S.K. Sinha, 1998. Prospects of success of biotechnological approaches for improving tolerance to drought stress in crop plants. Current Science 74(1): 25-34.
18. Doerge, R.W., 1993. Statistical methods for locating quantitative trait loci using molecular markers. PhD Dissertation thesis. North Carolina State University, Raleigh, North Carolina. USA.
19. Ekanayake, I.J., J.C. O'Toole, D.P. Garrity & T.N. Masajo, 1985. Inheritance of root characters and their relations to drought resistance in rice. Crop Sci 25: 927-933.
20. Fukai S. & M. Cooper, 1995. Development of drought resistant cultivars using physiomorphological traits in rice. Field Crop Res 40: 67-86.
21. Guiderdoni, E., E. Galinato, J. Luistro & G. Vergara, 1992. Anther culture of tropical japonica x indica hybrids of rice. Euphytica 62: 219-224.
22. Hanson, A.D., W.J. Peacock, L.T. Evans, C.J. Arntzen & G.S. Khush, 1990. Drought resistance in rice. Nature 234: 2.
23. Hemamalini, G.S., 1997. Molecular mapping of low moisture stress induced response in rice (Oryza saliva L.) roots at peak vegetative stage. M.Sc. (Agri.) Thesis submitted to the University of Agricultural Sciences. GKVK, Bangalore 560 065, India.
24. Huang, N., S.R. McCouch, S. Mew, A. Parco & E. Guiderdoni, 1994. Development of an RFLP map from a double haploid population in rice. Rice Genetics Newsletter 11: 134-137.
25. Huang, N., A. Parco, T Mew, G. Magpantay, S.R. McCouch, E. Guiderdoni, J. Xu, P. Subudhi, R.E. Angeles & G.S. Khush, 1997. RFLP mapping of isozymes, RAPD and QTLs for brown plant hopper resistance in a doubled haploid rice population. Mol Breed 3: 105-113.
26. Ingram, K.T., F.D. Bueno, O.S. Namuco, E.B. Yambao & C.A. Beyrouty, 1994. Rice root traits for drought resistance and their genetic variation. In: G.J.D. Kirk (Ed.), Rice Roots: Nutrient and Water Use, pp. 67-70. International Rice Research Institute, Manila, The Philippines.
27. International Rice Research Institute, 1980. Annual report for 1979, IRRI, Los Banos, Philippines: 73-99.
28. International Rice Research Institute, 1982. Annual report for 1981, IRRI, Los Banos, Philippines: 77-99.
29. International Rice Research Institute, 1984. Annual report for 1983, IRRI, Los Banos, Philippines: 85-100.
30. International Rice Research Institute, 1995. Challenges and opportunities in a less favorable ecosystem: Rainfed lowland rice, IRRI information series No. 1 IRRI, Los Banos, Philippines: 8-12.
31. Kurata, N., Y. Nagamura, A. Yamamoto, Y. Harushima, N. Sue, J. Wu, B.A. Antonnio, A. Shomura, T. Shimizu, S.Y. Lin, T. Inoue, A. Fukuda, T. Shimona, Y Kuboki, Y Momma, Y Umehara, M. Yano, T. Sasaki & Y Minobe, 1994. A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nature Genetics 8: 365-372.
32. Lander, E.S., 1993. MAPMAKER/EXP 3.0 and MAPMAKER/QTL 1.1. Whitehead Institute, 9, Cambridge, MA 02142, USA.
33. Lebreton, C., V. Lazic-Jancic, A. Steed, S. Pekic & S.A. Quarrie, 1995. Identification of QTL for drought responses in maize and their use in testing causal relationships between traits. J Exp Bot 46(288): 853-865.
34. Lilley, J.M., M.M. Ludlow, S.R. McCouch & J.C. O'Toole, 1996. Locating QTL for osmotic adjustment and dehydration tolerance in rice. J Exp Bot 47(307): 1427-1436.
35. Ludlow, M.M. & R.C. Muchow, 1990. A critical evaluation of traits for improving crop yields in water-limited environments. Adv in Agron 43: 107-153.
36. McCouch, S.R., G. Kochert, Z.H. Yu, Z.Y. Wang, G.S. Khush, W.R. Coffman & S.D. Tanksley, 1988. Molecular mapping of rice chromosomes. Theor Appl Genet 76: 815-829.
37. McCouch, S.R., Y.G. Cho, M. Yano, E. Paul, M. Blinstrub, H. Morishima & T. Kinoshita, 1997. Report on QTL Nomenclature, RGN 14: 11-13.
38. McWilliam, J.R., 1989. The dimensions of drought. In: F.W.G. Baker (Ed.), Drought Resistance in Cereals, pp. 1-11. CAB International, Wallingford, UK.
39. Nguyen, H.T., R.C. Babu & A. Blum, 1997. Breeding for drought resistance in rice: physiology and molecular genetics considerations. Crop Sci 37: 1426-1434.
40. O'Toole, J.C., 1989. Breeding for drought resistance in cereals. In: F.W.G. Baker (Ed.), Drought Resistance in Cereals, pp. 107-116. CAB International, Wallingford, UK.
41. O'Toole, J.C. & T.B. Moya, 1978. Genotypic variation in maintenance of leaf water potential in rice. Crop Sci 18: 873-876.
42. Paterson, A.H., S. Damon, J.D. Hewitt, D. Zamir, H.D. Rabinowitch, S.E. Lincoln & S.D. Tanksley, 1991. Mendelian factors underlying quantitative traits in tomato: comparison across species, generations and environments. Genetics 127: 181-197.
43. Price, A.H. & A.D. Tomas, 1997. Genetic dissection of root growth in rice (Oryza saliva L.) II: mapping quantitative trait loci using molecular markers. Theor Appl Genet 95: 143-152.
44. Puckridge, D.W. & J.C. O'Toole, 1981. Dry matter and grain production of rice, using a line source sprinkler in drought studies. Field Crops Res 3: 303-319.
45. Ray, J.D., L. Yu, S.R. McCouch, M.C. Champoux, G. Wang & H.T. Nguyen, 1996. Mapping quantitative trait loci associated with root penetration abililty in rice. Theor Appl Genet 92: 627-633.
46. Saito, A., M. Yano, N. Kishimoto, M. Nakagahra, A. Yoshimura, K. Saito, S. Kuhara, Y Ukai, M. Kawase, T. Nagamine, S. Yoshimura, O. Ideta, R. Ohsawa, Y Hayano, M. Iwata & M. Sugiura, 1991. Linkage map of restriction fragment polymorphism loci in rice. Japan J Breed 41: 665-670.
47. Salam, M.A. & S. Subramanian, 1988. Relationship between root weight and plant characters in rice in different seasons. Indian J of Agril Sci 58(9): 710.
48. Shahid, M., T. Latif, N. Iqbal & M.A. Khan, 1994. Genetic studies on drought tolerance in rice. Sarhad Journal of Agriculture 10(6): 617-674.
49. Stuber, C.W., S.E. Lincoln, D.W. Wolff, T. Helentjaris & E.S. Lander, 1992. Identification of genetic factors contributing to heterosis in hybrids from two elite maize inbred lines using molecular markers. Genetics 132: 823-839.
50. Xiao, J., J. Li, L. Yuan & S.D. Tanksley, 1996. Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross. Theor Appl Genet 92: 230-244.
51. Yadav, R.S., B. Courtois & N. Huang, 1997. Mapping genes controlling root morphology in a doubled haploid population of indica x japonica cross of rice. Theor Appl Genet 94: 619-632.
52. Yamaguchi-Shinozaki, K. & K. Shinozaki, 1997. Gene expression and signal transduction in water-stress response. Plant Physiol 115:327-334.
53. Yoshida, S. & S. Hasegawa, 1982. The rice root system: its development and function. In: Drought Resistance in Crops with Emphasis on Rice. IRRI, Philippines: 53-68.
54. Zheng, H.G., M.S. Pathan, R.C. Babu, L. Ali, N. Huang, B. Courtois & H.T. Nguyen, 1996. Molecular mapping of QTLs associated with root penetration ability in rice. Plant Genome IV, The international conference on the status of Plant Genome Research, San Diego, CA. Abstract no. P125.