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Volumn 2, Issue , 2012, Pages

Self-circularizing 5′-ETS RNAs accumulate along with unprocessed pre ribosomal RNAs in growth-stressed Entamoeba histolytica

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

EID: 84859776126     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep00303     Document Type: Article
Times cited : (21)

References (42)
  • 1
    • 0038506040 scopus 로고    scopus 로고
    • Life on a planet of its own: Regulation of RNA polymerase I transcription in the nucleolus
    • DOI 10.1101/gad.1098503R
    • Grummt, I. Life on a planet of its own: regulation of RNA polymerase I transcription in the nucleolus. Genes Dev. 7, 1691-702 (2003). (Pubitemid 36870332)
    • (2003) Genes and Development , vol.17 , Issue.14 , pp. 1691-1702
    • Grummt, I.1
  • 2
    • 1942471135 scopus 로고    scopus 로고
    • At the crossroads of growth control; making ribosomal RNA
    • DOI 10.1016/j.gde.2004.02.005, PII S0959437X04000279
    • Moss, T. At the crossroads of growth control; making ribosomal RNA. Curr. Opin. Genet. Dev. 14, 210-7 (2004). (Pubitemid 38520150)
    • (2004) Current Opinion in Genetics and Development , vol.14 , Issue.2 , pp. 210-217
    • Moss, T.1
  • 3
    • 0028934470 scopus 로고
    • Regulation of ribosomal gene transcription
    • Jacob, S. T. Regulation of ribosomal gene transcription. Biochem J. 306, 617-26 (1995).
    • (1995) Biochem J , vol.306 , pp. 617-626
    • Jacob, S.T.1
  • 4
    • 0022701244 scopus 로고
    • Transcription of eukaryotic ribosomal RNA gene
    • Jacob, S. T. Transcription of eukaryotic ribosomal RNA gene. Mol Cell Biochem. 70, 11-20 (1986).
    • (1986) Mol Cell Biochem , vol.70 , pp. 11-20
    • Jacob, S.T.1
  • 5
    • 0022555872 scopus 로고
    • Transcription of cloned eukaryotic ribosomal RNA genes
    • Sollner-Webb, B. & Tower, J. Transcription of cloned eukaryotic ribosomal RNA genes. Annu. Rev. Biochem. 55, 801-30 (1986). (Pubitemid 16070788)
    • (1986) Annual Review of Biochemistry , vol.VOL. 55 , pp. 801-830
    • Sollner-Webb, B.1    Tower, J.2
  • 6
    • 49249139050 scopus 로고    scopus 로고
    • The post-transcriptional steps of eukaryotic ribosome biogenesis
    • Henras, A. K. et al. The post-transcriptional steps of eukaryotic ribosome biogenesis. Cell Mol Life Sci. 65, 2334-59 (2008).
    • (2008) Cell Mol Life Sci , vol.65 , pp. 2334-2359
    • Henras, A.K.1
  • 8
    • 0034733393 scopus 로고    scopus 로고
    • The spacing between functional Cis-elements of U3 snoRNA is critical for rRNA processing
    • Borovjagin, A. V. & Gerbi, S. A. The spacing between functional Cis-elements of U3 snoRNA is critical for rRNA processing. J. Mol. Biol. 300, 57-74 (2000).
    • (2000) J. Mol. Biol , vol.300 , pp. 57-74
    • Borovjagin, A.V.1    Gerbi, S.A.2
  • 10
    • 34547163927 scopus 로고    scopus 로고
    • The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism
    • DOI 10.1128/MCB.00380-07
    • Pérez-Fernández, J., Román, A., De Las Rivas, J., Bustelo, X. R. & Dosil, M. The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism. Mol. Cell. Biol. 27, 5414-29 (2007). (Pubitemid 47124395)
    • (2007) Molecular and Cellular Biology , vol.27 , Issue.15 , pp. 5414-5429
    • Perez-Fernandez, J.1    Roman, A.2    De Las Rivas, J.3    Bustelo, X.R.4    Dosil, M.5
  • 11
    • 16544382021 scopus 로고    scopus 로고
    • RNA polymerase i transcription and pre-rRNA processing are linked by specific SSU processome components
    • Gallagher, J. E. et al. RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components. Genes Dev. 18, 2506-17 (2004).
    • (2004) Genes Dev , vol.18 , pp. 2506-2517
    • Gallagher, J.E.1
  • 12
    • 60849092896 scopus 로고    scopus 로고
    • The nuclear poly (A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance
    • Wery, M., Ruidant, S., Schillewaert, S., Leporé, N. & Lafontaine, D. L. The nuclear poly (A) polymerase and Exosome cofactor Trf5 is recruited cotranscriptionally to nucleolar surveillance. RNA. 15, 406-19 (2009).
    • (2009) RNA , vol.15 , pp. 406-419
    • Wery, M.1    Ruidant, S.2    Schillewaert, S.3    Leporé, N.4    Lafontaine, D.L.5
  • 14
    • 60149090021 scopus 로고    scopus 로고
    • The many pathways of RNA degradation
    • Houseley, J. & Tollervey, D. The many pathways of RNA degradation. Cell. 136, 763-76 (2009).
    • (2009) Cell , vol.136 , pp. 763-776
    • Houseley, J.1    Tollervey, D.2
  • 15
    • 58149094003 scopus 로고    scopus 로고
    • The 59 external transcribed spacer in mouse ribosomal RNA contains two cleavage sites
    • Kent, T., Lapik, Y. R. & Pestov, D. G. The 59 external transcribed spacer in mouse ribosomal RNA contains two cleavage sites. RNA. 15, 14-20 (2009).
    • (2009) RNA , vol.15 , pp. 14-20
    • Kent, T.1    Lapik, Y.R.2    Pestov, D.G.3
  • 16
    • 0032481316 scopus 로고    scopus 로고
    • Dob1p (Mtr4p] is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae
    • DOI 10.1093/emboj/17.4.1128
    • de la Cruz, J., Kressler, D., Tollervey, D. & Linder, P. Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 39 end formation of 5. 8S rRNA in Saccharomyces cerevisiae. EMBO J. 17, 1128-40, (1998). (Pubitemid 28077666)
    • (1998) EMBO Journal , vol.17 , Issue.4 , pp. 1128-1140
    • De La Cruz, J.1    Kressler, D.2    Tollervey, D.3    Linder, P.4
  • 17
    • 42349090712 scopus 로고    scopus 로고
    • Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana
    • DOI 10.1128/MCB.02064-07
    • Lange, H. et al. Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana. Mol. Cell Biol. 28, 3038-44 (2008). (Pubitemid 351556534)
    • (2008) Molecular and Cellular Biology , vol.28 , Issue.9 , pp. 3038-3044
    • Lange, H.1    Holec, S.2    Cognat, V.3    Pieuchot, L.4    Le Ret, M.5    Canaday, J.6    Gagliardi, D.7
  • 19
    • 0031981144 scopus 로고    scopus 로고
    • The ribosomal DNA plasmids of entamoeba
    • DOI 10.1016/S0169-4758(98)01222-8
    • Bhattacharya, S., Som, I. & Bhattacharya, A. The ribosomal DNA plasmids of entamoeba. Parasitol Today. 14, 181-5 (1998). (Pubitemid 28197739)
    • (1998) Parasitology Today , vol.14 , Issue.5 , pp. 181-185
    • Bhattacharya, S.1    Som, I.2    Bhattacharya, A.3
  • 20
    • 0034900998 scopus 로고    scopus 로고
    • Recombinational loss of a ribosomal DNA unit from the circular episome of Entamoeba histolytica HM-1:IMSS
    • DOI 10.1016/S0166-6851(01)00305-X, PII S016668510100305X
    • Ghosh, S., Zaki, M., Clark, C. G. & Bhattacharya, S. Recombinational loss of a ribosomal DNA unit from the circular episome of Entamoeba histolytia HM-1:IMSS. Mol. Biochem. Parasitol. 116, 105-8 (2001). (Pubitemid 32706434)
    • (2001) Molecular and Biochemical Parasitology , vol.116 , Issue.1 , pp. 105-108
    • Ghosh, S.1    Zaki, M.2    Clark C.Graham3    Bhattacharya, S.4
  • 21
    • 0028882045 scopus 로고
    • Identification and analysis of the start site of ribosomal RNA transcription of Entamoeba histolytica
    • Michel, B., Lizardi, P. M., Alagón, A. & Zurita, M. Identification and analysis of the start site of ribosomal RNA transcription of Entamoeba histolytica. Mol. Biochem. Parasitol. 73, 19-30 (1995).
    • (1995) Mol. Biochem. Parasitol , vol.73 , pp. 19-30
    • Michel, B.1    Lizardi, P.M.2    Alagón, A.3    Zurita, M.4
  • 22
    • 58149328699 scopus 로고    scopus 로고
    • Promoter analysis of palindromic transcription units in the ribosomal DNA circle of Entamoeba histolytica
    • Panigrahi, S. K. et al. Promoter analysis of palindromic transcription units in the ribosomal DNA circle of Entamoeba histolytica. Eukaryot. Cell. 8, 69-76 (2009).
    • (2009) Eukaryot. Cell , vol.8 , pp. 69-76
    • Panigrahi, S.K.1
  • 23
    • 77954685903 scopus 로고    scopus 로고
    • Serum-dependent selective expression of EhTMKB1-9, a member of Entamoeba histolytica B1 Family of Transmembrane Kinase
    • Shrimal, S., Bhattacharya, S & Bhattacharya, A. Serum-dependent selective expression of EhTMKB1-9, a member of Entamoeba histolytica B1 Family of Transmembrane Kinase. PLoS Pathog. 6, e1000929 (2010).
    • (2010) PLoS Pathog , vol.6
    • Shrimal, S.1    Bhattacharya, S.2    Bhattacharya, A.3
  • 24
    • 0029788452 scopus 로고    scopus 로고
    • A small circular TAR RNA decoy specifically inhibits Tat-activated HIV-1 transcription
    • DOI 10.1093/nar/24.19.3733
    • Bohjanen, P. R., Colvin, R. A., Puttaraju, M., Been, M. D. & Garcia-Blanco, M. A. A small circular TAR RNA decoy specifically inhibits Tat-activated HIV-1 transcription. Nucleic Acids Res. 24, 3733-8 (1996). (Pubitemid 26335382)
    • (1996) Nucleic Acids Research , vol.24 , Issue.19 , pp. 3733-3738
    • Bohjanen, P.R.1    Colvin, R.A.2    Puttaraju, M.3    Been, M.D.4    Garcia-Blanco, M.A.5
  • 25
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • DOI 10.1038/nrg2083, PII NRG2083
    • apranov, P., Willingham, A. T. & Gingeras, T. R. Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet. 8, 413-23 (2007). (Pubitemid 46789245)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.6 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 26
    • 23044437498 scopus 로고    scopus 로고
    • RNA meets chromatin
    • DOI 10.1101/gad.1324305
    • Bernstein, E. & Allis, C. D. RNA meets chromatin. Genes Dev. 19, 1635-55 (2005). (Pubitemid 41058358)
    • (2005) Genes and Development , vol.19 , Issue.14 , pp. 1635-1655
    • Bernstein, E.1    Allis, C.D.2
  • 27
    • 33646147563 scopus 로고    scopus 로고
    • Intergenic transcripts regulate the epigenetic state of rRNA genes
    • Mayer, C., Schmitz, K. M., Li, J., Grummt I & Santoro, R. Intergenic transcripts regulate the epigenetic state of rRNA genes. Mol. Cell. 22, 351-61 (2006).
    • (2006) Mol. Cell , vol.22 , pp. 351-361
    • Mayer, C.1    Schmitz, K.M.2    Li, J.3    Grummt, I.4    Santoro, R.5
  • 28
    • 70449370004 scopus 로고    scopus 로고
    • An intergenic non-coding rRNA correlated with expression of the rRNA and frequency of an rRNA single nucleotide polymorphism in lung cancer cells
    • Shiao, Y. H. et al. An intergenic non-coding rRNA correlated with expression of the rRNA and frequency of an rRNA single nucleotide polymorphism in lung cancer cells. PLoS One. 4, e7505 (2009).
    • (2009) PLoS One , vol.4
    • Shiao, Y.H.1
  • 29
    • 0031670651 scopus 로고    scopus 로고
    • Partially processed pre-rRNA is preserved in association with processing components in nucleolus-derived foci during mitosis
    • Dundr, M. & Olson, M. O. Partially Processed pre-rRNA Is Preserved in Association with Processing Components in Nucleolus-derived Foci during Mitosis. Mol. Biol. Cell. 9, 2407-22 (1998). (Pubitemid 28425885)
    • (1998) Molecular Biology of the Cell , vol.9 , Issue.9 , pp. 2407-2422
    • Dundr, M.1    Olson, M.O.J.2
  • 31
    • 0026579730 scopus 로고
    • Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
    • Beltrame, M. & Tollervey, D. Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J. 11, 1531-42 (1992).
    • (1992) EMBO J , vol.11 , pp. 1531-1542
    • Beltrame, M.1    Tollervey, D.2
  • 32
    • 58249123666 scopus 로고    scopus 로고
    • A natural ribozyme with 39, 59 RNA ligase activity
    • Vicens, Q. & Cech, T. R. A natural ribozyme with 39, 59 RNA ligase activity. Nat. Chem. Biol. 5, 97-9 (2009).
    • (2009) Nat. Chem. Biol , vol.5 , pp. 97-99
    • Vicens, Q.1    Cech, T.R.2
  • 34
    • 0030946966 scopus 로고    scopus 로고
    • Exon skipping and circular RNA formation in transcripts of the human cytochrome P-450 2C18 gene in epidermis and of the rat androgen binding protein gene in testis
    • Zaphiropoulos, P. G. Exon skipping and circular RNA formation in transcripts of the human cytochrome P-4502C18 gene in epidermis and rat androgen binding protein gene in testis. Mol. Cell. Biol. 17, 2985-93 (1997). (Pubitemid 27215012)
    • (1997) Molecular and Cellular Biology , vol.17 , Issue.6 , pp. 2985-2993
    • Zaphiropoulos, P.G.1
  • 35
    • 0029944946 scopus 로고    scopus 로고
    • Exon circularization in mammalian nuclear extracts
    • Pasman, Z., Been, M. D. & Garcia-Blanco, M. A. Exon circularization in mammalian nuclear extracts. RNA. 2, 603-10 (1996). (Pubitemid 26374232)
    • (1996) RNA , vol.2 , Issue.6 , pp. 603-610
    • Pasman, Z.1    Been, M.D.2    Garcia-Blanco, M.A.3
  • 36
    • 78650696753 scopus 로고    scopus 로고
    • Expression of linear and novel circular forms of an INK4/ARFassociated on-coding RNA correlates with atherosclerosis risk
    • Burd, C. E. et al. Expression of linear and novel circular forms of an INK4/ARFassociated on-coding RNA correlates with atherosclerosis risk. PLoS Genet. 6, e1001233 (2010).
    • (2010) PLoS Genet , vol.6
    • Burd, C.E.1
  • 38
    • 0344442429 scopus 로고    scopus 로고
    • The ability to form full-length intron RNA circles is a general property of nuclear group I introns
    • DOI 10.1261/rna.5290903
    • Nielsen, H. et al. The ability to form full-length intron RNA circles is a general property of nuclear group I introns. RNA. 9, 1464-75 (2003). (Pubitemid 37463473)
    • (2003) RNA , vol.9 , Issue.12 , pp. 1464-1475
    • Nielsen, H.1    Fiskaa, T.2    Birgisdottir, A.B.3    Haugen, P.4    Einvik, C.5    Johansen, S.6
  • 40
    • 0029050870 scopus 로고
    • Transfection and continuous expression of heterologous genes in the protozoan parasite Entamoeba histolytica
    • Hamann, L., Nickel, R. & Tannich, E. Transfection and continuous expression of heterologous genes in the protozoan parasite Entamoeba histolytica. Proc. Natl. Acad. Sci. U. S. A. 92, 8975-9 (1995).
    • (1995) Proc. Natl. Acad. Sci. U. S. A , vol.92 , pp. 8975-8979
    • Hamann, L.1    Nickel, R.2    Tannich, E.3
  • 41
    • 0037079666 scopus 로고    scopus 로고
    • RT-PCR analysis of 5′ to 3′-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria
    • Kuhn, J. & Binder, S. RT-PCR analysis of 59 to 39-end-ligated mRNAs identifies the extremities of cox2 transcripts in pea mitochondria. Nucleic Acids Res. 30, 439-46 (2002). (Pubitemid 34679604)
    • (2002) Nucleic Acids Research , vol.30 , Issue.2 , pp. 439-446
    • Kuhn, J.1    Binder, S.2


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