The spacing between functional Cis-elements of U3 snoRNA is critical for rRNA processing

Journal of Molecular Biology

Volumn 300, Issue 1, 2000, Pages 57-74

  Borovjagin, Anton V ^a   Gerbi, Susan A ^a  

^a BROWN UNIVERSITY   (United States)

Author keywords

RRNA processing; U3 snoRNA structure

Indexed keywords

CIS ACTING ELEMENT; RNA 18S; RNA PRECURSOR; SMALL NUCLEAR RNA;

ANIMAL CELL; ARTICLE; BASE PAIRING; CONTROLLED STUDY; NONHUMAN; OOCYTE; PRIORITY JOURNAL; RNA PROCESSING; RNA SEQUENCE; TRYPANOSOMA; XENOPUS LAEVIS; YEAST;

AMPHIBIA; ANIMALIA; REPTILIA; TRYPANOSOMA; XENOPUS LAEVIS;

EID: 0034733393     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3798     Document Type: Article

References (61)

1. Xenopus borealis and Xenopus laevis 28 S ribosomal DNA and the complete 40 S ribosomal precurcor RNA coding units of both species
2. Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA
3. Base-pairing between U3 and the pre-ribosomal RNA is required for 18 S rRNA synthesis
4. Mutational analysis of an essential binding site for the U3 snRNA in the 5' external transcribed spacer of yeast pre-rRNA. (Erratum in Nucl. Acids Res. 22, 4057-4065)
5. U3 small nucleolar RNA is essential for cleavage at sites 1, 2 and 3 in pre-rRNA and determines which rRNA pathway is taken in Xenopus oocytes
6. Sequence and secondary structure of the 5' external transcribed spacer of mouse pre-rRNA
7. The yeast Hansenula wingei U3 snRNA gene contains an intron and its coding sequence co-evolved with the 5' ETS region of the pre-ribosomal RNA
8. Mpp10p, a U3 small nucleolar ribonucleoprotein component required for pre-18 S rRNA processing in yeast
9. 5' ETS rRNA processing facilitated by four small RNAs: U14, E3, U17 and U3. (Erratum in RNA 2, 1318)
10. Multiple states of U3 RNA in Novikoff hepatoma nucleoli
11. The external transcribed spacer and preceding region of Xenopus borealis rDNA: Comparison with the corresponding region of Xenopus laevis rDNA
12. Evolution of ribosomal DNA
13. U3 snoRNA may recycle through different compartments of the nucleolus
14. Evolution of eukaryotic rRNA: Constraints imposed by RNA interactions
15. The ribosomal RNA processing pathway in Schizosaccharomyces pombe
16. Distinct regions of U3 snoRNA interact at two sites within the 5' external transcribed spacer of pre-rRNAs in Trypanosoma brucei cells
17. A common core structure for U3 small nucleolar RNAs
18. Two 5'-ETS regions implicated in interactions with U3 snoRNA are required for small subunit rRNA maturation in Trypanosoma brucei
19. Functional base-pairing interaction between highly conserved elements of U3 small nucleolar RNA and the small ribosomal subunit RNA
20. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5' external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18 S ribosomal RNA
21. The yeast homologue of U3 snRNA
22. Essential structural features in the Schizosaccharomyces pombe pre-rRNA 5' external transcribed spacer
23. A U3 snoRNP protein with homology to splicing factor PRP4 and Gβ domains is required for ribosomal RNA processing
24. Nucleotide sequence determination and secondary structure of Xenopus U3 snRNA
25. The primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific
26. The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing
27. Molecular analysis of a U3 gene locus in tomato: Transcription signals, the coding region, expression in transgenic tobacco plants and tandemly repeated pseudogenes
28. Nop58p is a common component of the box C + D snoRNPs that is required for stability of the snoRNAs
29. Nucleolar localization elements of Xenopus laevis U3 snoRNA
30. Amplification of plant U3 and U6 snRNA gene sequences using primers specific for an upstream promoter element and conserved intragenic regions
31. Characterization of U3 and U6 snRNA genes from wheat: U3 snRNA genes in monocot plants are transcribed by RNA polymerase III
32. U3 snRNA can be psoralen cross-linked in vivo to the 3' external transcribed spacer of pre-ribosomal RNA
33. Structure and organization of mouse U3B RNA functional genes
34. An in vivo and in vitro structure-function analysis of the Saccharomyces cerevisiae U3A snoRNA: Protein-RNA contacts and base-pair interactions with pre-ribosomal RNA
35. Secondary structure of the 5' external transcribed spacer of vertebrate pre-rRNA
36. The terminal balls characteristic of eukaryotic rRNA transcription units in chromatin spreads are rRNA processing complexes
37. Secondary structure of the yeast Saccharomyces cerevisiae pre-U3A snoRNA and its implication for splicing efficiency
38. An intron in the genes for U3 small nucleolar RNA of the yeast Saccharomyces cerevisiae
39. Role of the box C/D motif in localization of small nucleolar RNAs to coiled bodies and nucleoli
40. Sequences and proposed secondary structure of the Tetrahymena thermophila U3 snRNA
41. Structural analysis of the human U3 ribonucleoprotein particle reveals a conserved sequence available for base-pairing with pre-rRNA
42. The sequence of U3 from Schizosaccharomyces pombe suggests structural divergence of this snRNA between metazoans and unicellular eukaryotes. (Erratum in Nucl. Acids Res. 19, 3484)
43. Small nuclear RNA and RNA processing
44. Structure of the 5'-external transcribed spacer of the human ribosomal RNA gene
45. Functional mapping of the U3 small nucleolar RNA from the yeast Saccharamyces cerevisiae
46. In vivo disruption of Xenopus U3 snRNA affects ribosomal RNA processing
47. Genes for Xenopus laevis U3 small nuclear RNA
48. An experimental study of Saccharomyces cerevisiae U3 snRNA conformation in solution
49. The two similarly expressed genes encoding U3 snRNA in Schizosaccharomyces pombe lack introns
50. Base pairing between U3 small nucleolar RNA and the 5' end of 18 S rRNA is required for pre-rRNA, processing
51. The 5' end of the 18 S rRNA can be positioned from within the mature rRNA
52. The 5' end of U3 snRNA can be cross-linked in vivo to the external transcribed spacer of rat ribosomal RNA precursors
53. The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast
54. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus
55. A new interaction between the mouse 5' external transcribed spacer of pre-rRNA and U3 snRNA detected by psoralen cross-linking
56. A small nucleolar RNA is processed from an intron of the human gene encoding ribosomal protein S3
57. Processing of eukaryotic pre-rRNAs: The role of the transcribed spacers
58. Two distinct recognition signals define the site of endonucleolytic cleavage at the 5' end of yeast 18 S rRNA
59. Dictyostelium small nuclear RNA D2 is homologous to rat nucleolar RNA U3 and is encoded by a dispersed multigene family
60. Nop5p is a small nucleolar ribonucleoprotein component required for pre-18 S rRNA processing in yeast
61. Structural analysis of the 5' external transcribed spacer of the precursor ribosomal RNA from Saccharomyces cerevisiae