-
1
-
-
0028341536
-
Permeation of hydrophilic solutes through mitochondrial outer membranes: Review on mitochondrial porins
-
R. Benz, Permeation of hydrophilic solutes through mitochondrial outer membranes: review on mitochondrial porins, Biochim. Biophys. Acta 1197 (1994) 167-196.
-
(1994)
Biochim. Biophys. Acta
, vol.1197
, pp. 167-196
-
-
Benz, R.1
-
2
-
-
79851513761
-
Multiple pathways in the integration of proteins into the mitochondrial outer membrane
-
J. Dukanovic, D. Rapaport, Multiple pathways in the integration of proteins into the mitochondrial outer membrane, Biochim. Biophys. Acta 1808 (2011) 971-980.
-
(2011)
Biochim. Biophys. Acta
, vol.1808
, pp. 971-980
-
-
Dukanovic, J.1
Rapaport, D.2
-
3
-
-
0018775962
-
A candidate for the permeability pathway of the outer mitochondrial membrane
-
DOI 10.1038/279643a0
-
M. Colombini, A candidate for the permeability pathway of the outer mitochondrial membrane, Nature 279 (1979) 643-645. (Pubitemid 9198862)
-
(1979)
Nature
, vol.279
, Issue.5714
, pp. 643-645
-
-
Colombini, M.1
-
4
-
-
0020482168
-
Evidence for identity between the hexokinase-binding protein and the mitochondrial porin in the outer membrane of rat liver mitochondria
-
C. Fiek, R. Benz, N. Roos, D. Brdiczka, Evidence for identity between the hexokinase-binding protein and the mitochondrial porin in the outer membrane of rat liver mitochondria, Biochim. Biophys. Acta 688 (1982) 429-440.
-
(1982)
Biochim. Biophys. Acta
, vol.688
, pp. 429-440
-
-
Fiek, C.1
Benz, R.2
Roos, N.3
Brdiczka, D.4
-
5
-
-
79952702745
-
Is mPTP the gatekeeper for necrosis, apoptosis, or both?
-
K.W. Kinnally, P.M. Peixoto, S.Y. Ryu, L.M. Dejean, Is mPTP the gatekeeper for necrosis, apoptosis, or both? Biochim. Biophys. Acta 1813 (2010) 616-622.
-
(2010)
Biochim. Biophys. Acta
, vol.1813
, pp. 616-622
-
-
Kinnally, K.W.1
Peixoto, P.M.2
Ryu, S.Y.3
Dejean, L.M.4
-
6
-
-
77952886494
-
VDAC, a multi-functional mitochondrial protein regulating cell life and death
-
V. Shoshan-Barmatz, V. De Pinto, M. Zweckstetter, Z. Raviv, N. Keinan, N. Arbel, VDAC, a multi-functional mitochondrial protein regulating cell life and death, Mol. Aspects Med. 31 (2010) 227-285.
-
(2010)
Mol. Aspects Med.
, vol.31
, pp. 227-285
-
-
Shoshan-Barmatz, V.1
De Pinto, V.2
Zweckstetter, M.3
Raviv, Z.4
Keinan, N.5
Arbel, N.6
-
7
-
-
77950022490
-
Voltage-dependent anion channels: Their roles in plant defense and cell death
-
T. Kusano, C. Tateda, T. Berberich, Y. Takahashi, Voltage-dependent anion channels: their roles in plant defense and cell death, Plant Cell Rep. 28 (2009) 1301-1308.
-
(2009)
Plant Cell Rep.
, vol.28
, pp. 1301-1308
-
-
Kusano, T.1
Tateda, C.2
Berberich, T.3
Takahashi, Y.4
-
8
-
-
33947687132
-
The evolutionary history of mitochondrial porins
-
M.J. Young, D.C. Bay, G. Hausner, D.A. Court, The evolutionary history of mitochondrial porins, BMC Evol. Biol. 7 (2007) 31.
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 31
-
-
Young, M.J.1
Bay, D.C.2
Hausner, G.3
Court, D.A.4
-
9
-
-
0032765963
-
Mouse VDAC isoforms expressed in yeast: Channel properties and their roles in mitochondrial outer membrane permeability
-
DOI 10.1007/s002329900540
-
X. Xu, W. Decker, M.J. Sampson, W.J. Craigen, M. Colombini, Mouse VDAC isoforms expressed in yeast: channel properties and their roles in mitochondrial outer membrane permeability, J. Membr. Biol. 170 (1999) 89-102. (Pubitemid 29367689)
-
(1999)
Journal of Membrane Biology
, vol.170
, Issue.2
, pp. 89-102
-
-
Xu, X.1
Decker, W.2
Sampson, M.J.3
Craigen, W.J.4
Colombini, M.5
-
10
-
-
0027389308
-
Cloning and functional expression in yeast of two human isoforms of the outer mitochondrial membrane channel, the voltage-dependent anion channel
-
E. Blachly-Dyson, E.B. Zambronicz, W.H. Yu, V. Adams, E.R. McCabe, J. Adelman, M. Colombini, M. Forte, Cloning and functional expression in yeast of two human isoforms of the outer mitochondrial membrane channel, the voltage-dependent anion channel, J. Biol. Chem. 268 (1993) 1835-1841. (Pubitemid 23033582)
-
(1993)
Journal of Biological Chemistry
, vol.268
, Issue.3
, pp. 1835-1841
-
-
Blachly-Dyson, E.1
Zambronicz, E.B.2
Wei, H.Y.3
Adams, V.4
McCabe, E.R.B.5
Adelman, J.6
Colombini, M.7
Forte, M.8
-
11
-
-
0028079979
-
Biochemical, molecular, and functional characterization of porin isoforms from potato mitochondria
-
L. Heins, H. Mentzel, A. Schmid, R. Benz, U.K. Schmitz, Biochemical, molecular, and functional characterization of porin isoforms from potato mitochondria, J. Biol. Chem. 269 (1994) 26402-26410. (Pubitemid 24328462)
-
(1994)
Journal of Biological Chemistry
, vol.269
, Issue.42
, pp. 26402-26410
-
-
Heins, L.1
Mentzel, H.2
Schmid, A.3
Benz, R.4
Schmitz, U.K.5
-
12
-
-
0842285684
-
Molecular and Cell Biology of a Family of Voltage-Dependent Anion Channel Porins in Lotus japonicus
-
DOI 10.1104/pp.103.031484
-
M. Wandrey, B. Trevaskis, N. Brewin, M.K. Udvardi, Molecular and cell biology of a family of voltage-dependent anion channel porins in Lotus japonicus, Plant Physiol. 134 (2004) 182-193. (Pubitemid 38178691)
-
(2004)
Plant Physiology
, vol.134
, Issue.1
, pp. 182-193
-
-
Wandrey, M.1
Trevaskis, B.2
Brewin, N.3
Udvardi, M.K.4
-
13
-
-
0346057946
-
The Physiological Properties of A Novel Family of VDAC-Like Proteins from Drosophila melanogaster
-
A.G. Komarov, B.H. Graham, W.J. Craigen, M. Colombini, The physiological properties of a novel family of VDAC-like proteins from Drosophila melanogaster, Biophys. J. 86 (2004) 152-162. (Pubitemid 38067445)
-
(2004)
Biophysical Journal
, vol.86
, Issue.1 I
, pp. 152-162
-
-
Komarov, A.G.1
Graham, B.H.2
Craigen, W.J.3
Colombini, M.4
-
14
-
-
77954382593
-
Voltage-dependent anion channel in mammalian spermatozoa
-
B. Liu, W. Zhang, Z. Wang, Voltage-dependent anion channel in mammalian spermatozoa, Biochem. Biophys. Res. Commun. 397 (2010) 633-636.
-
(2010)
Biochem. Biophys. Res. Commun.
, vol.397
, pp. 633-636
-
-
Liu, B.1
Zhang, W.2
Wang, Z.3
-
15
-
-
60149110944
-
The single mitochondrial porin of Trypanosoma brucei is the main metabolite transporter in the outer mitochondrial membrane
-
M. Pusnik, F. Charriere, P. Maser, R.F. Waller, M.J. Dagley, T. Lithgow, A. Schneider, The single mitochondrial porin of Trypanosoma brucei is the main metabolite transporter in the outer mitochondrial membrane, Mol. Biol. Evol. 26 (2009) 671-680.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 671-680
-
-
Pusnik, M.1
Charriere, F.2
Maser, P.3
Waller, R.F.4
Dagley, M.J.5
Lithgow, T.6
Schneider, A.7
-
16
-
-
34249873947
-
Translocation of proteins into mitochondria
-
W. Neupert, J.M. Herrmann, Translocation of proteins into mitochondria, Annu. Rev. Biochem. 76 (2007) 723-749.
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 723-749
-
-
Neupert, W.1
Herrmann, J.M.2
-
17
-
-
37849035983
-
Multiple pathways for sorting mitochondrial precursor proteins
-
N. Bolender, A. Sickmann, R. Wagner, C. Meisinger, N. Pfanner, Multiple pathways for sorting mitochondrial precursor proteins, EMBO Rep. 9 (2008) 42-49.
-
(2008)
EMBO Rep.
, vol.9
, pp. 42-49
-
-
Bolender, N.1
Sickmann, A.2
Wagner, R.3
Meisinger, C.4
Pfanner, N.5
-
18
-
-
68749112707
-
Importing mitochondrial proteins: Machineries and mechanisms
-
A. Chacinska, C.M. Koehler, D. Milenkovic, T. Lithgow, N. Pfanner, Importing mitochondrial proteins: machineries and mechanisms, Cell 138 (2009) 628-644.
-
(2009)
Cell
, vol.138
, pp. 628-644
-
-
Chacinska, A.1
Koehler, C.M.2
Milenkovic, D.3
Lithgow, T.4
Pfanner, N.5
-
19
-
-
0026737314
-
Structure of porin refined at 1.8 A resolution
-
M.S. Weiss, G.E. Schulz, Structure of porin refined at 1.8 A resolution, J. Mol. Biol. 227 (1992) 493-509.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 493-509
-
-
Weiss, M.S.1
Schulz, G.E.2
-
20
-
-
0022033632
-
Molecular cloning and sequencing of cDNA for yeast porin, an outer mitochondrial membrane protein: A search for targeting signal in the primary structure
-
K. Mihara, R. Sato, Molecular cloning and sequencing of cDNA for yeast porin, an outer mitochondrial membrane protein: a search for targeting signal in the primary structure, EMBO J. 4 (1985) 769-774.
-
(1985)
EMBO J.
, vol.4
, pp. 769-774
-
-
Mihara, K.1
Sato, R.2
-
21
-
-
0023411929
-
Mitochondrial porin of Neurospora crassa: cDNA cloning, in vitro expression and import into mitochondria
-
R. Kleene, N. Pfanner, R. Pfaller, T.A. Link, W. Sebald, W. Neupert, M. Tropschug, Mitochondrial porin of Neurospora crassa: cDNA cloning, in vitro expression and import into mitochondria, EMBO J. 6 (1987) 2627-2633.
-
(1987)
EMBO J.
, vol.6
, pp. 2627-2633
-
-
Kleene, R.1
Pfanner, N.2
Pfaller, R.3
Link, T.A.4
Sebald, W.5
Neupert, W.6
Tropschug, M.7
-
22
-
-
0025606107
-
Identification of a mitochondrial receptor complex required for recognition and membrane insertion of precursor proteins
-
M. Kiebler, R. Pfaller, T. Sollner, G. Griffiths, H. Horstmann, N. Pfanner, W. Neupert, Identification of a mitochondrial receptor complex required for recognition and membrane insertion of precursor proteins, Nature 348 (1990) 610-616. (Pubitemid 120015115)
-
(1990)
Nature
, vol.348
, Issue.6302
, pp. 610-616
-
-
Kiebler, M.1
Pfaller, R.2
Sollner, T.3
Griffiths, G.4
Horstmann, H.5
Pfanner, N.6
Neupert, W.7
-
23
-
-
0025597095
-
A yeast mitochondrial outer membrane protein essential for protein import and cell viability
-
K.P. Baker, A. Schaniel, D. Vestweber, G. Schatz, A yeast mitochondrial outer membrane protein essential for protein import and cell viability, Nature 348 (1990) 605-609. (Pubitemid 120015114)
-
(1990)
Nature
, vol.348
, Issue.6302
, pp. 605-609
-
-
Baker, K.P.1
Schaniel, A.2
Vestweber, D.3
Schatz, G.4
-
24
-
-
0001121096
-
The protein import apparatus of the mitochondrial outer membrane
-
D.A. Court, R. Lill, A.F. Neuwald, The protein import apparatus of the mitochondrial outer membrane, Can. J. Bot. 73 (Suppl. 1) (1995) S193-S197.
-
(1995)
Can. J. Bot.
, vol.73
, Issue.SUPPL. 1
-
-
Court, D.A.1
Lill, R.2
Neuwald, A.F.3
-
25
-
-
0029776714
-
Circular dichroism studies of the mitochondrial channel, VDAC, from Neurospora crassa
-
L. Shao, K.W. Kinnally, C.A. Mannella, Circular dichroism studies of the mitochondrial channel, VDAC, from Neurospora crassa, Biophys. J. 71 (1996) 778-786. (Pubitemid 26289161)
-
(1996)
Biophysical Journal
, vol.71
, Issue.2
, pp. 778-786
-
-
Shao, L.1
Kinnally, K.W.2
Mannella, C.A.3
-
26
-
-
0032188847
-
Tom40 forms the hydrophilic channel of the mitochondrial import pore for preproteins
-
DOI 10.1038/26780
-
K. Hill, K. Model, M.T. Ryan, K. Dietmeier, F. Martin, R. Wagner, N. Pfanner, Tom40 forms the hydrophilic channel of the mitochondrial import pore for preproteins [see comment], Nature 395 (1998) 516-521. (Pubitemid 28462448)
-
(1998)
Nature
, vol.395
, Issue.6701
, pp. 516-521
-
-
Hill, K.1
Model, K.2
Ryan, M.T.3
Dietmeier, K.4
Martint, F.5
Wagner, R.6
Pfanner, N.7
-
27
-
-
50649121583
-
Solution structure of the integral human membrane protein VDAC-1 in detergent micelles
-
S. Hiller, R.G. Garces, T.J. Malia, V.Y. Orekhov, M. Colombini, G. Wagner, Solution structure of the integral human membrane protein VDAC-1 in detergent micelles, Science 321 (2008) 1206-1210.
-
(2008)
Science
, vol.321
, pp. 1206-1210
-
-
Hiller, S.1
Garces, R.G.2
Malia, T.J.3
Orekhov, V.Y.4
Colombini, M.5
Wagner, G.6
-
28
-
-
55749094704
-
Structure of the human voltage-dependent anion channel
-
M. Bayrhuber, T. Meins, M. Habeck, S. Becker, K. Giller, S. Villinger, C. Vonrhein, C. Griesinger, M. Zweckstetter, K. Zeth, Structure of the human voltage-dependent anion channel, Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 15370-15375.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 15370-15375
-
-
Bayrhuber, M.1
Meins, T.2
Habeck, M.3
Becker, S.4
Giller, K.5
Villinger, S.6
Vonrhein, C.7
Griesinger, C.8
Zweckstetter, M.9
Zeth, K.10
-
29
-
-
56649099192
-
The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating
-
R. Ujwal, D. Cascio, J.P. Colletier, S. Faham, J. Zhang, L. Toro, P. Ping, J. Abramson, The crystal structure of mouse VDAC1 at 2.3 A resolution reveals mechanistic insights into metabolite gating, Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 17742-17747.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 17742-17747
-
-
Ujwal, R.1
Cascio, D.2
Colletier, J.P.3
Faham, S.4
Zhang, J.5
Toro, L.6
Ping, P.7
Abramson, J.8
-
30
-
-
68249126139
-
The published 3D structure of the VDAC channel: Native or not?
-
M. Colombini, The published 3D structure of the VDAC channel: native or not? Trends Biochem. Sci. 34 (2009) 382-389.
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 382-389
-
-
Colombini, M.1
-
31
-
-
77956190164
-
The 3D structures of VDAC represent a native conformation
-
S. Hiller, J. Abramson, C. Mannella, G. Wagner, K. Zeth, The 3D structures of VDAC represent a native conformation, Trends Biochem. Sci. 35 (2010) 514-521.
-
(2010)
Trends Biochem. Sci.
, vol.35
, pp. 514-521
-
-
Hiller, S.1
Abramson, J.2
Mannella, C.3
Wagner, G.4
Zeth, K.5
-
32
-
-
77952681355
-
Origami in outer membrane mimetics: Correlating the first detailed images of refolded VDAC with over 20 years of biochemical data
-
W.A. Summers, D.A. Court, Origami in outer membrane mimetics: correlating the first detailed images of refolded VDAC with over 20 years of biochemical data, Biochem. Cell Biol. 88 (2010) 425-438.
-
(2010)
Biochem. Cell Biol.
, vol.88
, pp. 425-438
-
-
Summers, W.A.1
Court, D.A.2
-
33
-
-
77953811604
-
Structure and evolution of mitochondrial outer membrane proteins of beta-barrel topology
-
K. Zeth, Structure and evolution of mitochondrial outer membrane proteins of beta-barrel topology, Biochim. Biophys. Acta 1797 (2010) 1292-1299.
-
(2010)
Biochim. Biophys. Acta
, vol.1797
, pp. 1292-1299
-
-
Zeth, K.1
-
34
-
-
0032553430
-
The isolated complex of the translocase of the outer membrane of mitochondria. Characterization of the cation-selective and voltage-gated preprotein-conducting pore
-
DOI 10.1074/jbc.273.47.31032
-
K.P. Künkele, P. Juin, C. Pompa, F.E. Nargang, J.P. Henry, W. Neupert, R. Lill, M. Thieffry, The isolated complex of the translocase of the outer membrane of mitochondria. Characterization of the cation-selective and voltage-gated preproteinconducting pore, J. Biol. Chem. 273 (1998) 31032-31039. (Pubitemid 28533109)
-
(1998)
Journal of Biological Chemistry
, vol.273
, Issue.47
, pp. 31032-31039
-
-
Kunkele, K.-P.1
Juin, P.2
Pompa, C.3
Nargang, F.E.4
Henry, J.-P.5
Neupert, W.6
Lill, R.7
Thieffry, M.8
-
35
-
-
38449097898
-
Identification and characterization of a new Tom40 isoform, a central component of mitochondrial outer membrane translocase
-
DOI 10.1093/jb/mvm097
-
J.Y. Kinoshita, K. Mihara, T. Oka, Identification and characterization of a new tom40 isoform, a central component of mitochondrial outer membrane translocase, J. Biochem. 141 (2007) 897-906. (Pubitemid 351455330)
-
(2007)
Journal of Biochemistry
, vol.141
, Issue.6
, pp. 897-906
-
-
Kinoshita, J.-Y.1
Mihara, K.2
Oka, T.3
-
36
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
DOI 10.1093/bioinformatics/btl158
-
W. Li, A. Godzik, Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences, Bioinformatics 22 (2006) 1658-1659. (Pubitemid 43985301)
-
(2006)
Bioinformatics
, vol.22
, Issue.13
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
37
-
-
77949601825
-
CD-HIT Suite: A web server for clustering and comparing biological sequences
-
Y. Huang, B. Niu, Y. Gao, L. Fu, W. Li, CD-HIT Suite: a web server for clustering and comparing biological sequences, Bioinformatics 26 (2010) 680-682.
-
(2010)
Bioinformatics
, vol.26
, pp. 680-682
-
-
Huang, Y.1
Niu, B.2
Gao, Y.3
Fu, L.4
Li, W.5
-
38
-
-
67650757433
-
trimAl: A tool for automated alignment trimming in large-scale phylogenetic analyses
-
S. Capella-Gutierrez, J.M. Silla-Martinez, T. Gabaldon, trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses, Bioinformatics 25 (2009) 1972-1973.
-
(2009)
Bioinformatics
, vol.25
, pp. 1972-1973
-
-
Capella-Gutierrez, S.1
Silla-Martinez, J.M.2
Gabaldon, T.3
-
39
-
-
79957521422
-
New methods to measure residues coevolution in proteins
-
H. Gao, Y. Dou, J. Yang, J. Wang, New methods to measure residues coevolution in proteins, BMC Bioinformatics 12 (2011) 206.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 206
-
-
Gao, H.1
Dou, Y.2
Yang, J.3
Wang, J.4
-
40
-
-
84875806187
-
-
K.B. Nicholas and H.B.J. Nicholas. 2.5.010 ed., pp. Distributed by the author. (1997)
-
K.B. Nicholas and H.B.J. Nicholas. 2.5.010 ed., pp. Distributed by the author. (1997).
-
-
-
-
42
-
-
18744382506
-
ProtTest: Selection of best-fit models of protein evolution
-
DOI 10.1093/bioinformatics/bti263
-
F. Abascal, R. Zardoya, D. Posada, ProtTest: selection of best-fit models of protein evolution, Bioinformatics 21 (2005) 2104-2105. (Pubitemid 40668057)
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2104-2105
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
43
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
J. Felsenstein, Confidence limits on phylogenies: an approach using the bootstrap, Evolution 39 (1985) 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
44
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
DOI 10.1093/bioinformatics/btg180
-
F. Ronquist, J.P. Huelsenbeck, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics 19 (2003) 1572-1574. (Pubitemid 37038874)
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
45
-
-
4344648036
-
Bayesian inference of character evolution
-
DOI 10.1016/j.tree.2004.07.002, PII S0169534704001831
-
F. Ronquist, Bayesian inference of character evolution, Trends Ecol. Evol. 19 (2004) 475-481. (Pubitemid 39151667)
-
(2004)
Trends in Ecology and Evolution
, vol.19
, Issue.9
, pp. 475-481
-
-
Ronquist, F.1
-
46
-
-
0030203863
-
TreeView: An application to display phylogenetic trees on personal computers
-
R.D. Page, TreeView: an application to display phylogenetic trees on personal computers, Comput. Appl. Biosci. 12 (1996) 357-358.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 357-358
-
-
Page, R.D.1
-
47
-
-
42449127565
-
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
-
R. Merkl, M. Zwick, H2r: identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments, BMC Bioinformatics 9 (2008) 151.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 151
-
-
Merkl, R.1
Zwick, M.2
-
48
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
F. Kiefer, K. Arnold, M. Kunzli, L. Bordoli, T. Schwede, The SWISS-MODEL Repository and associated resources, Nucleic Acids Res. 37 (2009) D387-D392.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
49
-
-
0036740806
-
ESyPred3D: Prediction of proteins 3D structures
-
C. Lambert, N. Leonard, X. De Bolle, E. Depiereux, ESyPred3D: prediction of proteins 3D structures, Bioinformatics 18 (2002) 1250-1256.
-
(2002)
Bioinformatics
, vol.18
, pp. 1250-1256
-
-
Lambert, C.1
Leonard, N.2
De Bolle, X.3
Depiereux, E.4
-
51
-
-
78651285748
-
CDD: A Conserved Domain Database for the functional annotation of proteins
-
A. Marchler-Bauer, S. Lu, J.B. Anderson, F. Chitsaz, M.K. Derbyshire, C. DeWeese- Scott, J.H. Fong, L.Y. Geer, R.C. Geer, N.R. Gonzales, M. Gwadz, D.I. Hurwitz, J.D. Jackson, Z. Ke, C.J. Lanczycki, F. Lu, G.H. Marchler, M. Mullokandov, M.V. Omelchenko, C.L. Robertson, J.S. Song, N. Thanki, R.A. Yamashita, D. Zhang, N. Zhang, C. Zheng, S.H. Bryant, CDD: a Conserved Domain Database for the functional annotation of proteins, Nucleic Acids Res. 39 (2011) D225-D229.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
DeWeese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
-
52
-
-
33644782643
-
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
-
DOI 10.1111/j.1550-7408.2005.00053.x
-
S.M. Adl, A.G. Simpson, M.A. Farmer, R.A. Andersen, O.R. Anderson, J.R. Barta, S.S. Bowser, G. Brugerolle, R.A. Fensome, S. Fredericq, T.Y. James, S. Karpov, P. Kugrens, J. Krug, C.E. Lane, L.A. Lewis, J. Lodge, D.H. Lynn,D.G.Mann, R.M.McCourt, L.Mendoza, O. Moestrup, S.E. Mozley-Standridge, T.A. Nerad, C.A. Shearer, A.V. Smirnov, F.W. Spiegel,M.F. Taylor, The new higher level classification of eukaryoteswith emphasis on the taxonomy of protists, J. Eukaryot. Microbiol. 52 (2005) 399-451. (Pubitemid 43923926)
-
(2005)
Journal of Eukaryotic Microbiology
, vol.52
, Issue.5
, pp. 399-451
-
-
Adl, S.M.1
Simpson, A.G.B.2
Farmer, M.A.3
Andersen, R.A.4
Anderson, O.R.5
Barta, J.R.6
Bowser, S.S.7
Brugerolle, G.8
Fensome, R.A.9
Fredericq, S.10
James, T.Y.11
Karpov, S.12
Kugrens, P.13
Krug, J.14
Lane, C.E.15
Lewis, L.A.16
Lodge, J.17
Lynn, D.H.18
Mann, D.G.19
Mccourt, R.M.20
Mendoza, L.21
Moestrup, O.22
Mozley-Standridge, S.E.23
Nerad, T.A.24
Shearer, C.A.25
Smirnov, A.V.26
Spiegel, F.W.27
Taylor, M.F.J.R.28
more..
-
53
-
-
41049083552
-
Why should we care about molecular coevolution?
-
F.M. Codoner, M.A. Fares, Why should we care about molecular coevolution? Evol. Bioinform. Online 4 (2008) 29-38.
-
(2008)
Evol. Bioinform. Online
, vol.4
, pp. 29-38
-
-
Codoner, F.M.1
Fares, M.A.2
-
54
-
-
0017054558
-
Reconstitution in planar lipid bilayers of a voltage dependent anion selective channel obtained from paramecium mitochondria
-
S.J. Schein, M. Colombini, A. Finkelstein, Reconstitution in planar lipid bilayers of a voltage-dependent anion-selective channel obtained from paramecium mitochondria, J. Membr. Biol. 30 (1976) 99-120. (Pubitemid 8010351)
-
(1976)
Journal of Membrane Biology
, vol.30
, Issue.2
, pp. 99-120
-
-
Schein, S.J.1
Colombini, M.2
Finkelstein, A.3
-
55
-
-
0030873947
-
Multicopy suppressors of phenotypes resulting from the absence of yeast VDAC encode a VDAC-like protein
-
E. Blachly-Dyson, J. Song, W.J. Wolfgang, M. Colombini, M. Forte, Multicopy suppressors of phenotypes resulting from the absence of yeast VDAC encode a VDAC-like protein, Mol. Cell. Biol. 17 (1997) 5727-5738. (Pubitemid 27411080)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.10
, pp. 5727-5738
-
-
Blachly-Dyson, E.1
Song, J.2
Wolfgang, W.J.3
Colombini, M.4
Forte, M.5
-
56
-
-
0036968479
-
Origami in the outer membrane: The transmembrane arrangement of mitochondrial porins
-
DOI 10.1139/o02-149
-
D.C. Bay, D.A. Court, Origami in the outer membrane: the transmembrane arrangement of mitochondrial porins, Biochem. Cell Biol. 80 (2002) 551-562. (Pubitemid 36124816)
-
(2002)
Biochemistry and Cell Biology
, vol.80
, Issue.5
, pp. 551-562
-
-
Bay, D.C.1
Court, D.A.2
-
57
-
-
0025355620
-
Selectivity changes in sitedirected mutants of the VDAC ion channel: Structural implications
-
E. Blachly-Dyson, S. Peng, M. Colombini, M. Forte, Selectivity changes in sitedirected mutants of the VDAC ion channel: structural implications, Science 247 (1990) 1233-1236.
-
(1990)
Science
, vol.247
, pp. 1233-1236
-
-
Blachly-Dyson, E.1
Peng, S.2
Colombini, M.3
Forte, M.4
-
58
-
-
0027315863
-
Mapping of residues forming the voltage sensor of the voltage-dependent anion-selective channel
-
L. Thomas, E. Blachly-Dyson, M. Colombini, M. Forte, Mapping of residues forming the voltage sensor of the voltage-dependent anion-selective channel, Proc. Natl. Acad. Sci. U. S. A. 90 (1993) 5446-5449. (Pubitemid 23176177)
-
(1993)
Proceedings of the National Academy of Sciences of the United States of America
, vol.90
, Issue.12
, pp. 5446-5449
-
-
Thomas, L.1
Blachly-Dyson, E.2
Colombini, M.3
Forte, M.4
-
59
-
-
0029016857
-
Molecular design of the voltage-dependent, anion-selective channel in the mitochondrial outer membrane
-
X.W. Guo, P.R. Smith, B. Cognon, D. D'Arcangelis, E. Dolginova, C.A. Mannella, Molecular design of the voltage-dependent, anion-selective channel in the mitochondrial outer membrane, J. Struct. Biol. 114 (1995) 41-59.
-
(1995)
J. Struct. Biol.
, vol.114
, pp. 41-59
-
-
Guo, X.W.1
Smith, P.R.2
Cognon, B.3
D'Arcangelis, D.4
Dolginova, E.5
Mannella, C.A.6
-
60
-
-
34247567854
-
Supramolecular Assembly of VDAC in Native Mitochondrial Outer Membranes
-
DOI 10.1016/j.jmb.2007.03.063, PII S0022283607004299
-
R.P. Goncalves, N. Buzhynskyy, V. Prima, J.N. Sturgis, S. Scheuring, Supramolecular assembly of VDAC in native mitochondrial outer membranes, J. Mol. Biol. 369 (2007) 413-418. (Pubitemid 46678059)
-
(2007)
Journal of Molecular Biology
, vol.369
, Issue.2
, pp. 413-418
-
-
Goncalves, R.P.1
Buzhynskyy, N.2
Prima, V.3
Sturgis, J.N.4
Scheuring, S.5
-
61
-
-
0028316039
-
A crucial role of the mitochondrial protein import receptor MOM19 for the biogenesis of mitochondria
-
T.A. Harkness, F.E. Nargang, I. van der Klei, W. Neupert, R. Lill, A crucial role of the mitochondrial protein import receptor MOM19 for the biogenesis of mitochondria, J. Cell Biol. 124 (1994) 637-648. (Pubitemid 24085775)
-
(1994)
Journal of Cell Biology
, vol.124
, Issue.5
, pp. 637-648
-
-
Harkness, T.A.A.1
Nargang, F.E.2
Van Der, K.I.3
Neupert, W.4
Lill, R.5
-
62
-
-
0030586353
-
Role of the N- and C-termini of porin in import into the outer membrane of Neurospora mitochondria
-
DOI 10.1016/0014-5793(96)00629-1
-
D.A. Court, R. Kleene, W. Neupert, R. Lill, Role of the N- and C-termini of porin in import into the outer membrane of Neurospora mitochondria, FEBS Lett. 390 (1996) 73-77. (Pubitemid 26233270)
-
(1996)
FEBS Letters
, vol.390
, Issue.1
, pp. 73-77
-
-
Court, D.A.1
Kleene, R.2
Neupert, W.3
Lill, R.4
-
63
-
-
0029994354
-
Tom71, a novel homologue of the mitochondrial preprotein receptor Tom70
-
DOI 10.1074/jbc.271.30.17890
-
J. Schlossmann, R. Lill,W. Neupert, D.A. Court, Tom71, a novel homologue of themitochondrial preprotein receptor Tom70, J. Biol. Chem. 271 (1996) 17890-17895. (Pubitemid 26250768)
-
(1996)
Journal of Biological Chemistry
, vol.271
, Issue.30
, pp. 17890-17895
-
-
Schlossmann, J.1
Lill, R.2
Neupert, W.3
Court, D.A.4
-
64
-
-
33646089667
-
The C-terminal TPR domain of Tom70 defines a family of mitochondrial protein import receptors found only in animals and fungi
-
N.C. Chan, V.A. Likic, R.F. Waller, T.D. Mulhern, T. Lithgow, The C-terminal TPR domain of Tom70 defines a family of mitochondrial protein import receptors found only in animals and fungi, J. Mol. Biol. 358 (2006) 1010-1022.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 1010-1022
-
-
Chan, N.C.1
Likic, V.A.2
Waller, R.F.3
Mulhern, T.D.4
Lithgow, T.5
-
65
-
-
0032857837
-
Inactivation of the Neurospora crassa mitochondrial outer membrane protein TOM70 by repeat-induced point mutation (RIP) causes defects in mitochondrial protein import and morphology
-
DOI 10.1007/s002940050483
-
L.I. Grad, A.T. Descheneau, W. Neupert, R. Lill, F.E. Nargang, Inactivation of the Neurospora crassa mitochondrial outer membrane protein TOM70 by repeatinduced point mutation (RIP) causes defects in mitochondrial protein import and morphology, Curr. Genet. 36 (1999) 137-146. (Pubitemid 29440496)
-
(1999)
Current Genetics
, vol.36
, Issue.3
, pp. 137-146
-
-
Grad, L.I.1
Descheneau, A.T.2
Neupert, W.3
Lill, R.4
Nargang, F.E.5
-
66
-
-
0024317055
-
The mitochondrial targeting function of randomly generated peptide sequences correlates with predicted helical amphiphilicity
-
B.D. Lemire, C. Fankhauser, A. Baker, G. Schatz, The mitochondrial targeting function of randomly generated peptide sequences correlates with predicted helical amphiphilicity, J. Biol. Chem. 264 (1989) 20206-20215. (Pubitemid 20009197)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.34
, pp. 20206-20215
-
-
Lemire, B.D.1
Fankhauser, C.2
Baker, A.3
Schatz, G.4
-
67
-
-
40749159588
-
Dissecting Membrane Insertion of Mitochondrial beta-Barrel Proteins
-
DOI 10.1016/j.cell.2008.01.028, PII S0092867408001281
-
S. Kutik, D. Stojanovski, L. Becker, T. Becker, M. Meinecke, V. Kruger, C. Prinz, C. Meisinger, B. Guiard, R.Wagner, N. Pfanner, N. Wiedemann, Dissecting membrane insertion of mitochondrial beta-barrel proteins, Cell 132 (2008) 1011-1024. (Pubitemid 351381741)
-
(2008)
Cell
, vol.132
, Issue.6
, pp. 1011-1024
-
-
Kutik, S.1
Stojanovski, D.2
Becker, L.3
Becker, T.4
Meinecke, M.5
Kruger, V.6
Prinz, C.7
Meisinger, C.8
Guiard, B.9
Wagner, R.10
Pfanner, N.11
Wiedemann, N.12
-
68
-
-
79551613290
-
Toward the estimation of the absolute quality of individual protein structure models
-
P. Benkert, M. Biasini, T. Schwede, Toward the estimation of the absolute quality of individual protein structure models, Bioinformatics 27 (2011) 343-350.
-
(2011)
Bioinformatics
, vol.27
, pp. 343-350
-
-
Benkert, P.1
Biasini, M.2
Schwede, T.3
-
69
-
-
0018956403
-
Pore size and properties of channels from mitochondria isolated from Neurospora crassa
-
DOI 10.1007/BF01870576
-
M. Colombini, Pore size and properties of channels isolated from mitochondria isolated from Neurospora crassa, J. Membr. Biol. 53 (1980) 79-84. (Pubitemid 10033412)
-
(1980)
Journal of Membrane Biology
, vol.53
, Issue.2
, pp. 79-84
-
-
Colombini, M.1
-
70
-
-
0345189360
-
Tom40 protein import channel binds to non-native proteins and prevents their aggregation
-
DOI 10.1038/nsb1008
-
M. Esaki, T. Kanamori, S. Nishikawa, I. Shin, P.G. Schultz, T. Endo, Tom40 protein import channel binds to non-native proteins and prevents their aggregation, Nat. Struct. Biol. 10 (2003) 988-994. (Pubitemid 37500490)
-
(2003)
Nature Structural Biology
, vol.10
, Issue.12
, pp. 988-994
-
-
Esaki, M.1
Kanamori, T.2
Nishikawa, S.-I.3
Shin, I.4
Schultz, P.G.5
Endo, T.6
-
71
-
-
0031813295
-
Dynamics of the TOM complex of mitochondria during binding and translocation of preproteins
-
D. Rapaport, K.P. Kunkele, M. Dembowski, U. Ahting, F.E. Nargang, W. Neupert, R. Lill, Dynamics of the TOM complex of mitochondria during binding and translocation of preproteins, Mol. Cell. Biol. 18 (1998) 5256-5262. (Pubitemid 28388109)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.9
, pp. 5256-5262
-
-
Rapaport, D.1
Kunkele, K.-P.2
Dembowski, M.3
Ahting, U.4
Nargang, F.E.5
Neupert, W.6
Lill, R.7
-
72
-
-
27144464893
-
Preprotein translocase of the outer mitochondrial membrane: Reconstituted Tom40 forms a characteristic TOM pore
-
DOI 10.1016/j.jmb.2005.09.019, PII S0022283605010727
-
L. Becker, M. Bannwarth, C. Meisinger, K. Hill, K. Model, T. Krimmer, R. Casadio, K.N. Truscott, G.E. Schulz, N. Pfanner, R. Wagner, Preprotein translocase of the outer mitochondrial membrane: reconstituted Tom40 forms a characteristic TOM pore, J. Mol. Biol. 353 (2005) 1011-1020. (Pubitemid 41503269)
-
(2005)
Journal of Molecular Biology
, vol.353
, Issue.5
, pp. 1011-1020
-
-
Becker, L.1
Bannwarth, M.2
Meisinger, C.3
Hill, K.4
Model, K.5
Krimmer, T.6
Casadio, R.7
Truscott, K.N.8
Schulz, G.E.9
Pfanner, N.10
Wagner, R.11
-
73
-
-
78650658645
-
Tom7 regulates Mdm10-mediated assembly of the mitochondrial import channel protein Tom40
-
K. Yamano, S. Tanaka-Yamano, T. Endo, Tom7 regulates Mdm10-mediated assembly of the mitochondrial import channel protein Tom40, J. Biol. Chem. 285 (2010) 41222-41231.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 41222-41231
-
-
Yamano, K.1
Tanaka-Yamano, S.2
Endo, T.3
-
74
-
-
33747366121
-
Effect of mutations in Tom40 on stability of the translocase of the outer mitochondrial membrane (TOM) complex, assembly of Tom40, and import of mitochondrial preproteins
-
E.L. Sherman, R.D. Taylor, N.E. Go, F.E. Nargang, Effect of mutations in Tom40 on stability of the translocase of the outer mitochondrial membrane (TOM) complex, assembly of Tom40, and import of mitochondrial preproteins, J. Biol. Chem. 281 (2006) 22554-22565.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 22554-22565
-
-
Sherman, E.L.1
Taylor, R.D.2
Go, N.E.3
Nargang, F.E.4
-
75
-
-
0037566814
-
Tom40, the import channel of the mitochondrial outer membrane, plays an active role in sorting imported proteins
-
DOI 10.1093/emboj/cdg229
-
K. Gabriel, B. Egan, T. Lithgow, Tom40, the import channel of the mitochondrial outer membrane, plays an active role in sorting imported proteins, EMBO J. 22 (2003) 2380-2386. (Pubitemid 36604977)
-
(2003)
EMBO Journal
, vol.22
, Issue.10
, pp. 2380-2386
-
-
Gabriel, K.1
Egan, B.2
Lithgow, T.3
-
76
-
-
0035931764
-
Biogenesis of porin of the outer mitochondrial membrane involves an import pathway via receptors and the general import pore of the TOM complex
-
DOI 10.1083/jcb.152.2.289
-
T. Krimmer, D. Rapaport, M.T. Ryan, C. Meisinger, C.K. Kassenbrock, E. Blachly- Dyson, M. Forte, M.G. Douglas, W. Neupert, F.E. Nargang, N. Pfanner, Biogenesis of porin of the outer mitochondrial membrane involves an import pathway via receptors and the general import pore of the TOM complex, J. Cell Biol. 152 (2001) 289-300. (Pubitemid 34285599)
-
(2001)
Journal of Cell Biology
, vol.152
, Issue.2
, pp. 289-300
-
-
Krimmer, T.1
Rapaport, D.2
Ryan, M.T.3
Meisinger, C.4
Kassenbrock, C.K.5
Blachly-Dyson, E.6
Forte, M.7
Douglas, M.G.8
Neupert, W.9
Nargang, F.E.10
Pfanner, N.11
-
77
-
-
23144440940
-
PRALINE: A multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
-
DOI 10.1093/nar/gki390
-
V.A. Simossis, J. Heringa, PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information, Nucleic Acids Res. 33 (2005) W289-W294. (Pubitemid 44529928)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Simossis, V.A.1
Heringa, J.2
-
78
-
-
0036568279
-
Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
-
DOI 10.1002/prot.10082
-
G. Pollastri, D. Przybylski, B. Rost, P. Baldi, Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles, Proteins 47 (2002) 228-235. (Pubitemid 34263335)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.2
, pp. 228-235
-
-
Pollastri, G.1
Przybylski, D.2
Rost, B.3
Baldi, P.4
-
79
-
-
67749122635
-
An ER-mitochondria tethering complex revealed by a synthetic biology screen
-
B. Kornmann, E. Currie, S.R. Collins, M. Schuldiner, J. Nunnari, J.S. Weissman, P. Walter, An ER-mitochondria tethering complex revealed by a synthetic biology screen, Science 325 (2009) 477-481.
-
(2009)
Science
, vol.325
, pp. 477-481
-
-
Kornmann, B.1
Currie, E.2
Collins, S.R.3
Schuldiner, M.4
Nunnari, J.5
Weissman, J.S.6
Walter, P.7
-
80
-
-
0028024592
-
Regulation of mitochondrial morphology and inheritance by Mdm10p, a protein of the mitochondrial outer membrane
-
L.F. Sogo, M.P. Yaffe, Regulation of mitochondrial morphology and inheritance by Mdm10p, a protein of the mitochondrial outer membrane, J. Cell Biol. 126 (1994) 1361-1373. (Pubitemid 24284603)
-
(1994)
Journal of Cell Biology
, vol.126
, Issue.6
, pp. 1361-1373
-
-
Sogo, L.F.1
Yaffe, M.P.2
-
81
-
-
77952395425
-
Roles of the Mdm10, Tom7, Mdm12, and Mmm1 proteins in the assembly of mitochondrial outer membrane proteins in Neurospora crassa
-
J.G. Wideman, N.E. Go, A. Klein, E. Redmond, S.W. Lackey, T. Tao, H. Kalbacher, D. Rapaport, W. Neupert, F.E. Nargang, Roles of the Mdm10, Tom7, Mdm12, and Mmm1 proteins in the assembly of mitochondrial outer membrane proteins in Neurospora crassa, Mol. Biol. Cell 21 (2010) 1725-1736.
-
(2010)
Mol. Biol. Cell
, vol.21
, pp. 1725-1736
-
-
Wideman, J.G.1
Go, N.E.2
Klein, A.3
Redmond, E.4
Lackey, S.W.5
Tao, T.6
Kalbacher, H.7
Rapaport, D.8
Neupert, W.9
Nargang, F.E.10
-
82
-
-
77956634838
-
Porins in prokaryotes and eukaryotes: Common themes and variations
-
K. Zeth, M. Thein, Porins in prokaryotes and eukaryotes: common themes and variations, Biochem. J. 431 (2010) 13-22.
-
(2010)
Biochem. J.
, vol.431
, pp. 13-22
-
-
Zeth, K.1
Thein, M.2
-
83
-
-
84858008525
-
Mitochondrial dysfunction resulting from the absence of mitochondrial porin in Neurospora crassa
-
doi:10.1016/j.mito.2011.09.002
-
W.A.T. Summers, J.A. Wilkins, R.C. Dwivedi, P. Ezzati and D.A. Court, Mitochondrial dysfunction resulting from the absence of mitochondrial porin in Neurospora crassa. Mitochondrion (2011). doi:10.1016/j.mito.2011.09.002.
-
(2011)
Mitochondrion
-
-
Summers, W.A.T.1
Wilkins, J.A.2
Dwivedi, R.C.3
Ezzati, P.4
Court, D.A.5
-
84
-
-
58149193233
-
The SWISS-MODEL Repository and associated resources
-
F. Kiefer, K. Arnold, M. Kunzli, L. Bordoli, T. Schwede, The SWISS-MODEL Repository and associated resources, Nucleic Acids Res. 37 (2009) D387-392.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Kiefer, F.1
Arnold, K.2
Kunzli, M.3
Bordoli, L.4
Schwede, T.5
-
85
-
-
79551613290
-
Toward the estimation of the absolute quality of individual protein structure models
-
P. Benkert, M. Biasini, T. Schwede, Toward the estimation of the absolute quality of individual protein structure models, Bioinformatics 27 (2011) 343-350.
-
(2011)
Bioinformatics
, vol.27
, pp. 343-350
-
-
Benkert, P.1
Biasini, M.2
Schwede, T.3
-
86
-
-
77953811604
-
Structure and evolution of mitochondrial outer membrane proteins of beta-barrel topology
-
K. Zeth, Structure and evolution of mitochondrial outer membrane proteins of beta-barrel topology, Biochim. Biophys. Acta 1797 (2010) 1292-1299.
-
(2010)
Biochim. Biophys. Acta
, vol.1797
, pp. 1292-1299
-
-
Zeth, K.1
|