-
1
-
-
34548133728
-
Predicting functionally important residues from sequence conservation
-
10.1093/bioinformatics/btm270 17519246
-
Capra JA Singh M Predicting functionally important residues from sequence conservation Bioinformatics 2007, 23(15):1875-1882. 10.1093/ bioinformatics/btm270 17519246
-
(2007)
Bioinformatics
, vol.23
, Issue.15
, pp. 1875-1882
-
-
Capra, J.A.1
Singh, M.2
-
2
-
-
33748505263
-
Incorporating background frequency improves entropy-based residue conservation measures
-
1562451 16916457 10.1186/1471-2105-7-385
-
Wang K Samudrala R Incorporating background frequency improves entropy-based residue conservation measures BMC Bioinformatics 2006, 7:385. 1562451 16916457 10.1186/1471-2105-7-385
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 385
-
-
Wang, K.1
Samudrala, R.2
-
3
-
-
0037470597
-
Automatic methods for predicting functionally important residues
-
10.1016/S0022-2836(02)01451-1 12589769
-
del Sol Mesa A Pazos F Valencia A Automatic methods for predicting functionally important residues J Mol Biol 2003, 326(4):1289-1302. 10.1016/S0022-2836(02)01451-1 12589769
-
(2003)
J Mol Biol
, vol.326
, Issue.4
, pp. 1289-1302
-
-
del Sol Mesa, A.1
Pazos, F.2
Valencia, A.3
-
4
-
-
0023660022
-
Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus
-
10.1016/0022-2836(87)90352-4 3612789
-
Altschuh D Lesk AM Bloomer AC Klug A Correlation of co-ordinated amino acid substitutions with function in viruses related to tobacco mosaic virus J Mol Biol 1987, 193(4):693-707. 10.1016/0022-2836(87)90352-4 3612789
-
(1987)
J Mol Biol
, vol.193
, Issue.4
, pp. 693-707
-
-
Altschuh, D.1
Lesk, A.M.2
Bloomer, A.C.3
Klug, A.4
-
5
-
-
0028125904
-
How frequent are correlated changes in families of protein sequences?
-
42893 8278414 10.1073/pnas.91.1.98
-
Neher E How frequent are correlated changes in families of protein sequences? Proc Natl Acad Sci U S A 1994, 91(1):98-102. 42893 8278414 10.1073/pnas.91.1.98
-
(1994)
Proc Natl Acad Sci U S A
, vol.91
, Issue.1
, pp. 98-102
-
-
Neher, E.1
-
6
-
-
0028295169
-
Correlated mutations and residue contacts in proteins
-
10.1002/prot.340180402 82087230
-
Göbel U Sander C Schneider R Valencia A Correlated mutations and residue contacts in proteins Proteins 1994, 18(4):309-317. 10.1002/ prot.340180402 82087230
-
(1994)
Proteins
, vol.18
, Issue.4
, pp. 309-317
-
-
Göbel, U.1
Sander, C.2
Schneider, R.3
Valencia, A.4
-
7
-
-
0033977832
-
Correlations among amino acid sites in bHLH protein domains: An information theoretic analysis
-
10666716
-
Atchley WR Wollenberg KR Fitch WM Terhalle W Dress AW Correlations among amino acid sites in bHLH protein domains: An information theoretic analysis Mol Biol Evol 2000, 17(1):164-178. 10666716
-
(2000)
Mol Biol Evol
, vol.17
, Issue.1
, pp. 164-178
-
-
Atchley, W.R.1
Wollenberg, K.R.2
Fitch, W.M.3
Terhalle, W.4
Dress, A.W.5
-
8
-
-
27944458910
-
Using information theory to search for co-evolving residues in proteins
-
10.1093/bioinformatics/bti671 16159918
-
Martin LC Gloor GB Dunn SD Wahl LM Using information theory to search for co-evolving residues in proteins Bioinformatics 2005, 21(22):4116-4124. 10.1093/bioinformatics/bti671 16159918
-
(2005)
Bioinformatics
, vol.21
, Issue.22
, pp. 4116-4124
-
-
Martin, L.C.1
Gloor, G.B.2
Dunn, S.D.3
Wahl, L.M.4
-
9
-
-
0034721944
-
Analysis of covariation in an SH3 domain sequence alignment: Applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions
-
10.1006/jmbi.2000.4146 11031119
-
Larson SM Di Nardo AA Davidson AR Analysis of covariation in an SH3 domain sequence alignment: Applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions J Mol Biol 2000, 303(3):433-446. 10.1006/jmbi.2000.4146 11031119
-
(2000)
J Mol Biol
, vol.303
, Issue.3
, pp. 433-446
-
-
Larson, S.M.1
Di Nardo, A.A.2
Davidson, A.R.3
-
10
-
-
0036721218
-
Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations
-
10.1002/prot.10180 12211028
-
Kass I Horovitz A Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations Proteins 2002, 48(4):611-617. 10.1002/prot.10180 12211028
-
(2002)
Proteins
, vol.48
, Issue.4
, pp. 611-617
-
-
Kass, I.1
Horovitz, A.2
-
11
-
-
0030627941
-
Improving contact predictions by the combination of correlated mutations and other sources of sequence information
-
10.1016/S1359-0278(97)00060-6 9218963
-
Olmea O Valencia A Improving contact predictions by the combination of correlated mutations and other sources of sequence information Fold Des 1997, 2(3):S25-32. 10.1016/S1359-0278(97)00060-6 9218963
-
(1997)
Fold Des
, vol.2
, Issue.3
-
-
Olmea, O.1
Valencia, A.2
-
12
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
10.1126/science.286.5438.295 10514373
-
Lockless SW Ranganathan R Evolutionarily conserved pathways of energetic connectivity in protein families Science 1999, 286(5438):295-299. 10.1126/science.286.5438.295 10514373
-
(1999)
Science
, vol.286
, Issue.5438
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
13
-
-
3543089710
-
A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments
-
10.1093/bioinformatics/bth128 14962924
-
Dekker JP Fodor A Aldrich RW Yellen G A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments Bioinformatics 2004, 20(10):1565-1572. 10.1093/ bioinformatics/bth128 14962924
-
(2004)
Bioinformatics
, vol.20
, Issue.10
, pp. 1565-1572
-
-
Dekker, J.P.1
Fodor, A.2
Aldrich, R.W.3
Yellen, G.4
-
14
-
-
0037219686
-
Evolutionarily conserved networks of residues mediate allosteric communication in proteins
-
10.1038/nsb881 12483203
-
Süel GM Lockless SW Wall MA Ranganathan R Evolutionarily conserved networks of residues mediate allosteric communication in proteins Nat Struct Biol 2003, 10(1):59-69. 10.1038/nsb881 12483203
-
(2003)
Nat Struct Biol
, vol.10
, Issue.1
, pp. 59-69
-
-
Süel, G.M.1
Lockless, S.W.2
Wall, M.A.3
Ranganathan, R.4
-
15
-
-
31344432159
-
Determination of network of residues that regulate allostery in protein families using sequence analysis
-
2242462 16434743 10.1110/ps.051767306
-
Dima RI Thirumalai D Determination of network of residues that regulate allostery in protein families using sequence analysis Protein Sci 2006, 15(2):258-268. 2242462 16434743 10.1110/ps.051767306
-
(2006)
Protein Sci
, vol.15
, Issue.2
, pp. 258-268
-
-
Dima, R.I.1
Thirumalai, D.2
-
16
-
-
12844268072
-
Statistical coevolution analysis and molecular dynamics: Identification of amino acid pairs essential for catalysis
-
545822 15657135 10.1073/pnas.0409128102
-
Estabrook RA Luo J Purdy MM Sharma V Weakliem P Bruice TC Reich NO Statistical coevolution analysis and molecular dynamics: Identification of amino acid pairs essential for catalysis Proc Natl Acad Sci U S A 2005, 102(4):994-999. 545822 15657135 10.1073/pnas.0409128102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, Issue.4
, pp. 994-999
-
-
Estabrook, R.A.1
Luo, J.2
Purdy, M.M.3
Sharma, V.4
Weakliem, P.5
Bruice, T.C.6
Reich, N.O.7
-
17
-
-
84856043672
-
A mathematical theory of communication
-
Shannon CE A mathematical theory of communication Bell Sys Tech J 1948, 27:379-423.
-
(1948)
Bell Sys Tech J
, vol.27
, pp. 379-423
-
-
Shannon, C.E.1
-
18
-
-
0025008168
-
Sequence logos: A new way to display consensus sequences
-
332411 2172928 10.1093/nar/18.20.6097
-
Schneider TD Stephens RM Sequence logos: A new way to display consensus sequences Nucleic Acids Res 1990, 18(20):6097-6100. 332411 2172928 10.1093/nar/18.20.6097
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.20
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
20
-
-
18544362952
-
Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions
-
10.1021/bi050293e 15882054
-
Gloor GB Martin LC Wahl LM Dunn SD Mutual information in protein multiple sequence alignments reveals two classes of coevolving positions Biochemistry 2005, 44(19):7156-7165. 10.1021/bi050293e 15882054
-
(2005)
Biochemistry
, vol.44
, Issue.19
, pp. 7156-7165
-
-
Gloor, G.B.1
Martin, L.C.2
Wahl, L.M.3
Dunn, S.D.4
-
21
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
10.1038/nrg1272 10.1038/nrg1272 14735121
-
Barabási AL Oltvai ZN Network biology: Understanding the cell's functional organization Nat Rev Genet 2004, 5(2):101-113. 10.1038/ nrg1272 14735121
-
(2004)
Nat Rev Genet
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabási, A.L.1
Oltvai, Z.N.2
-
22
-
-
33644876020
-
Pfam: Clans, web tools and services
-
Database issue 1347511 16381856 10.1093/nar/gkj149
-
Finn RD Mistry J Schuster-Böckler B Griffiths-Jones S Hollich V Lassmann T Moxon S Marshall M Khanna A Durbin R Eddy SR Sonnhammer EL Bateman A Pfam: Clans, web tools and services Nucleic Acids Res 2006, 34(Database issue):D247-51. 1347511 16381856 10.1093/nar/gkj149
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Böckler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
23
-
-
0027245080
-
Crystal structure of the SH3 domain in human Fyn; comparison of the three-dimensional structures of SH3 domains in tyrosine kinases and spectrin
-
413508 7687536
-
Noble ME Musacchio A Saraste M Courtneidge SA Wierenga RK Crystal structure of the SH3 domain in human Fyn; comparison of the three-dimensional structures of SH3 domains in tyrosine kinases and spectrin EMBO J 1993, 12(7):2617-2624. 413508 7687536
-
(1993)
EMBO J
, vol.12
, Issue.7
, pp. 2617-2624
-
-
Noble, M.E.1
Musacchio, A.2
Saraste, M.3
Courtneidge, S.A.4
Wierenga, R.K.5
-
24
-
-
20844452182
-
Detection and reduction of evolutionary noise in correlated mutation analysis
-
10.1093/protein/gzi029 15911538
-
Noivirt O Eisenstein M Horovitz A Detection and reduction of evolutionary noise in correlated mutation analysis Protein Eng Des Sel 2005, 18(5):247-253. 10.1093/protein/gzi029 15911538
-
(2005)
Protein Eng Des Sel
, vol.18
, Issue.5
, pp. 247-253
-
-
Noivirt, O.1
Eisenstein, M.2
Horovitz, A.3
-
25
-
-
33847356936
-
A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction
-
10.1002/prot.21223 17243158
-
Eyal E Frenkel-Morgenstern M Sobolev V Pietrokovski S A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction Proteins 2007, 67(1):142-153. 10.1002/prot.21223 17243158
-
(2007)
Proteins
, vol.67
, Issue.1
, pp. 142-153
-
-
Eyal, E.1
Frenkel-Morgenstern, M.2
Sobolev, V.3
Pietrokovski, S.4
-
26
-
-
2942580743
-
An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels
-
10.1016/j.jmb.2004.04.064 15201054
-
Fleishman SJ Yifrach O Ben-Tal N An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels J Mol Biol 2004, 340(2):307-318. 10.1016/j.jmb.2004.04.064 15201054
-
(2004)
J Mol Biol
, vol.340
, Issue.2
, pp. 307-318
-
-
Fleishman, S.J.1
Yifrach, O.2
Ben-Tal, N.3
-
27
-
-
0035957229
-
Investigation of allosteric linkages in the regulation of tryptophan synthase: The roles of salt bridges and monovalent cations probed by site-directed mutation, optical spectroscopy, and kinetics
-
10.1021/bi002690p 11297416
-
Weber-Ban E Hur O Bagwell C Banik U Yang LH Miles EW Dunn MF Investigation of allosteric linkages in the regulation of tryptophan synthase: The roles of salt bridges and monovalent cations probed by site-directed mutation, optical spectroscopy, and kinetics. Biochemistry 2001, 40(12):3497-3511. 10.1021/bi002690p 11297416
-
(2001)
Biochemistry
, vol.40
, Issue.12
, pp. 3497-3511
-
-
Weber-Ban, E.1
Hur, O.2
Bagwell, C.3
Banik, U.4
Yang, L.H.5
Miles, E.W.6
Dunn, M.F.7
-
28
-
-
34247380632
-
Modelling the evolution of the archeal tryptophan synthase
-
1854888 17425797 10.1186/1471-2148-7-59
-
Merkl R Modelling the evolution of the archeal tryptophan synthase BMC Evol Biol 2007, 7:59. 1854888 17425797 10.1186/1471-2148-7-59
-
(2007)
BMC Evol Biol
, vol.7
, pp. 59
-
-
Merkl, R.1
-
29
-
-
0036882159
-
On the role of αThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase
-
10.1016/S0022-2836(02)01109-9 12460570
-
Kulik V Weyand M Seidel R Niks D Arac D Dunn MF Schlichting I On the role of αThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase J Mol Biol 2002, 324(4):677-690. 10.1016/S0022-2836(02)01109-9 12460570
-
(2002)
J Mol Biol
, vol.324
, Issue.4
, pp. 677-690
-
-
Kulik, V.1
Weyand, M.2
Seidel, R.3
Niks, D.4
Arac, D.5
Dunn, M.F.6
Schlichting, I.7
-
30
-
-
13444254300
-
PDBsum more: New summaries and analyses of the known 3D structures of proteins and nucleic acids
-
(Database issue) 539955 15608193 10.1093/nar/gki001
-
Laskowski RA Chistyakov VV Thornton JM PDBsum more: New summaries and analyses of the known 3D structures of proteins and nucleic acids Nucleic Acids Res 2005, 33(Database issue):D266-8. 539955 15608193 10.1093/nar/gki001
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Laskowski, R.A.1
Chistyakov, V.V.2
Thornton, J.M.3
-
31
-
-
24044547672
-
On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes
-
10.1016/j.jmb.2005.07.014 16120446
-
Kulik V Hartmann E Weyand M Frey M Gierl A Niks D Dunn MF Schlichting I On the structural basis of the catalytic mechanism and the regulation of the alpha subunit of tryptophan synthase from Salmonella typhimurium and BX1 from maize, two evolutionarily related enzymes J Mol Biol 2005, 352(3):608-620. 10.1016/j.jmb.2005.07.014 16120446
-
(2005)
J Mol Biol
, vol.352
, Issue.3
, pp. 608-620
-
-
Kulik, V.1
Hartmann, E.2
Weyand, M.3
Frey, M.4
Gierl, A.5
Niks, D.6
Dunn, M.F.7
Schlichting, I.8
-
32
-
-
0024297340
-
Three-dimensional structure of the tryptophan synthase α2β2 multienzyme complex from Salmonella typhimurium
-
3053720
-
Hyde CC Ahmed SA Padlan EA Miles EW Davies DR Three-dimensional structure of the tryptophan synthase α2β2 multienzyme complex from Salmonella typhimurium J Biol Chem 1988, 263(33):17857-17871. 3053720
-
(1988)
J Biol Chem
, vol.263
, Issue.33
, pp. 17857-17871
-
-
Hyde, C.C.1
Ahmed, S.A.2
Padlan, E.A.3
Miles, E.W.4
Davies, D.R.5
-
34
-
-
0029889988
-
PHD: Predicting one-dimensional protein structure by profile-based neural networks
-
8743704
-
Rost B PHD: Predicting one-dimensional protein structure by profile-based neural networks Methods Enzymol 1996, 266:525-539. 8743704
-
(1996)
Methods Enzymol
, vol.266
, pp. 525-539
-
-
Rost, B.1
-
35
-
-
0034595501
-
Enhanced genome annotation using structural profiles in the program 3D-PSSM
-
10.1006/jmbi.2000.3741 10860755
-
Kelley LA MacCallum RM Sternberg MJ Enhanced genome annotation using structural profiles in the program 3D-PSSM J Mol Biol 2000, 299(2):499-520. 10.1006/jmbi.2000.3741 10860755
-
(2000)
J Mol Biol
, vol.299
, Issue.2
, pp. 499-520
-
-
Kelley, L.A.1
MacCallum, R.M.2
Sternberg, M.J.3
-
36
-
-
0013776758
-
Molecules as documents of evolutionary history
-
10.1016/0022-5193(65)90083-4 5876245
-
Zuckerkandl E Pauling L Molecules as documents of evolutionary history J Theor Biol 1965, 8(2):357-366. 10.1016/0022-5193(65)90083-4 5876245
-
(1965)
J Theor Biol
, vol.8
, Issue.2
, pp. 357-366
-
-
Zuckerkandl, E.1
Pauling, L.2
-
37
-
-
0028301575
-
Amino acid preferences at protein binding sites
-
10.1016/0014-5793(94)00648-2 8045288
-
Villar HO Kauvar LM Amino acid preferences at protein binding sites FEBS Lett 1994, 349(1):125-130. 10.1016/0014-5793(94)00648-2 8045288
-
(1994)
FEBS Lett
, vol.349
, Issue.1
, pp. 125-130
-
-
Villar, H.O.1
Kauvar, L.M.2
-
39
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
10.1002/prot.340090107 2017436
-
Sander C Schneider R Database of homology-derived protein structures and the structural meaning of sequence alignment Proteins 1991, 9(1):56-68. 10.1002/prot.340090107 2017436
-
(1991)
Proteins
, vol.9
, Issue.1
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
40
-
-
23144448512
-
ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures
-
(Web Server issue) 1160131 15980475 10.1093/nar/gki370
-
Landau M Mayrose I Rosenberg Y Glaser F Martz E Pupko T Ben-Tal N ConSurf 2005: The projection of evolutionary conservation scores of residues on protein structures Nucleic Acids Res 2005, 33(Web Server issue):W299-302. 1160131 15980475 10.1093/nar/gki370
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Landau, M.1
Mayrose, I.2
Rosenberg, Y.3
Glaser, F.4
Martz, E.5
Pupko, T.6
Ben-Tal, N.7
-
41
-
-
0037433701
-
Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments
-
10.1093/bioinformatics/btg072 12691987
-
Tillier ER Lui TW Using multiple interdependency to separate functional from phylogenetic correlations in protein alignments Bioinformatics 2003, 19(6):750-755. 10.1093/bioinformatics/btg072 12691987
-
(2003)
Bioinformatics
, vol.19
, Issue.6
, pp. 750-755
-
-
Tillier, E.R.1
Lui, T.W.2
-
42
-
-
24144476642
-
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships
-
10.1093/bioinformatics/bti564 15994190
-
Sato T Yamanishi Y Kanehisa M Toh H The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships Bioinformatics 2005, 21(17):3482-3489. 10.1093/bioinformatics/bti564 15994190
-
(2005)
Bioinformatics
, vol.21
, Issue.17
, pp. 3482-3489
-
-
Sato, T.1
Yamanishi, Y.2
Kanehisa, M.3
Toh, H.4
-
43
-
-
1642452921
-
Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families
-
10.1110/ps.03191704 14739328 2286703
-
Kalinina OV Mironov AA Gelfand MS Rakhmaninova AB Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families Protein Sci 2004, 13(2):443-456. 10.1110/ps.03191704 14739328 2286703
-
(2004)
Protein Sci
, vol.13
, Issue.2
, pp. 443-456
-
-
Kalinina, O.V.1
Mironov, A.A.2
Gelfand, M.S.3
Rakhmaninova, A.B.4
-
44
-
-
0346733329
-
Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?
-
10.1110/ps.03323604 14691234 2286531
-
Caffrey DR Somaroo S Hughes JD Mintseris J Huang ES Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? Protein Sci 2004, 13(1):190-202. 10.1110/ps.03323604 14691234 2286531
-
(2004)
Protein Sci
, vol.13
, Issue.1
, pp. 190-202
-
-
Caffrey, D.R.1
Somaroo, S.2
Hughes, J.D.3
Mintseris, J.4
Huang, E.S.5
-
45
-
-
0042767572
-
Using multiple sequence correlation analysis to characterize functionally important protein regions
-
10.1093/protein/gzg053 12874372
-
Saraf MC Moore GL Maranas CD Using multiple sequence correlation analysis to characterize functionally important protein regions Protein Eng 2003, 16(6):397-406. 10.1093/protein/gzg053 12874372
-
(2003)
Protein Eng
, vol.16
, Issue.6
, pp. 397-406
-
-
Saraf, M.C.1
Moore, G.L.2
Maranas, C.D.3
-
46
-
-
0033618350
-
The crystal structure of cystathionine γ-synthase from Nicotiana tabacum reveals its substrate and reaction specificity
-
10.1006/jmbi.1999.2935 10438597
-
Steegborn C Messerschmidt A Laber B Streber W Huber R Clausen T The crystal structure of cystathionine γ-synthase from Nicotiana tabacum reveals its substrate and reaction specificity J Mol Biol 1999, 290(5):983-996. 10.1006/jmbi.1999.2935 10438597
-
(1999)
J Mol Biol
, vol.290
, Issue.5
, pp. 983-996
-
-
Steegborn, C.1
Messerschmidt, A.2
Laber, B.3
Streber, W.4
Huber, R.5
Clausen, T.6
-
47
-
-
13444272079
-
The CATH domain structure database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis
-
(Database issue) 539978 15608188 10.1093/nar/gki024
-
Pearl F Todd A Sillitoe I Dibley M Redfern O Lewis T Bennett C Marsden R Grant A Lee D Akpor A Maibaum M Harrison A Dallman T Reeves G Diboun I Addou S Lise S Johnston C Sillero A Thornton J Orengo C The CATH domain structure database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis Nucleic Acids Res 2005, 33(Database issue):D247-51. 539978 15608188 10.1093/nar/ gki024
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pearl, F.1
Todd, A.2
Sillitoe, I.3
Dibley, M.4
Redfern, O.5
Lewis, T.6
Bennett, C.7
Marsden, R.8
Grant, A.9
Lee, D.10
Akpor, A.11
Maibaum, M.12
Harrison, A.13
Dallman, T.14
Reeves, G.15
Diboun, I.16
Addou, S.17
Lise, S.18
Johnston, C.19
Sillero, A.20
Thornton, J.21
Orengo, C.22
more..
-
48
-
-
13744252890
-
MAFFT version 5: Improvement in accuracy of multiple sequence alignment
-
548345 15661851 10.1093/nar/gki198
-
Katoh K Kuma K Toh H Miyata T MAFFT version 5: Improvement in accuracy of multiple sequence alignment Nucleic Acids Res 2005, 33(2):511-518. 548345 15661851 10.1093/nar/gki198
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.2
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
49
-
-
33645507429
-
M-Coffee: Combining multiple sequence alignment methods with T-Coffee
-
1410914 16556910 10.1093/nar/gkl091
-
Wallace IM O'Sullivan O Higgins DG Notredame C M-Coffee: Combining multiple sequence alignment methods with T-Coffee Nucleic Acids Res 2006, 34(6):1692-1699. 1410914 16556910 10.1093/nar/gkl091
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.6
, pp. 1692-1699
-
-
Wallace, I.M.1
O'Sullivan, O.2
Higgins, D.G.3
Notredame, C.4
-
50
-
-
34547756442
-
Automatic extraction of reliable regions from multiple sequence alignments
-
1892097 17570868 10.1186/1471-2105-8-S5-S9
-
Lassmann T Sonnhammer EL Automatic extraction of reliable regions from multiple sequence alignments BMC Bioinformatics 2007, 8(Suppl 5):S9. 1892097 17570868 10.1186/1471-2105-8-S5-S9
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.SUPPL. 5
-
-
Lassmann, T.1
Sonnhammer, E.L.2
-
51
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
10.1006/jmbi.2000.4042 10964570
-
Notredame C Higgins DG Heringa J T-Coffee: A novel method for fast and accurate multiple sequence alignment J Mol Biol 2000, 302(1):205-217. 10.1006/jmbi.2000.4042 10964570
-
(2000)
J Mol Biol
, vol.302
, Issue.1
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
52
-
-
3242891674
-
SDPpred: A tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins
-
(Web Server issue) 441529 15215423 10.1093/nar/gkh391
-
Kalinina OV Novichkov PS Mironov AA Gelfand MS Rakhmaninova AB SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins Nucleic Acids Res 2004, 32(Web Server issue):W424-8. 441529 15215423 10.1093/nar/gkh391
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kalinina, O.V.1
Novichkov, P.S.2
Mironov, A.A.3
Gelfand, M.S.4
Rakhmaninova, A.B.5
-
53
-
-
0027317580
-
Performance evaluation of amino acid substitution matrices
-
10.1002/prot.340170108 8234244
-
Henikoff S Henikoff JG Performance evaluation of amino acid substitution matrices Proteins 1993, 17(1):49-61. 10.1002/prot.340170108 8234244
-
(1993)
Proteins
, vol.17
, Issue.1
, pp. 49-61
-
-
Henikoff, S.1
Henikoff, J.G.2
-
54
-
-
0033516705
-
The packing density in proteins: Standard radii and volumes
-
10.1006/jmbi.1999.2829 10388571
-
Tsai J Taylor R Chothia C Gerstein M The packing density in proteins: standard radii and volumes J Mol Biol 1999, 290(1):253-266. 10.1006/ jmbi.1999.2829 10388571
-
(1999)
J Mol Biol
, vol.290
, Issue.1
, pp. 253-266
-
-
Tsai, J.1
Taylor, R.2
Chothia, C.3
Gerstein, M.4
|