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Volumn 7, Issue 4, 2012, Pages

Genomic, proteomic and physiological characterization of a T5-like bacteriophage for control of shiga toxin-producing escherichia coli O157:H7

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; PROTEIN PB2; RNA POLYMERASE; TRANSFER RNA; UNCLASSIFIED DRUG; VIRUS FIBER PROTEIN; VIRUS PROTEIN; SHIGA TOXIN;

EID: 84859703341     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0034585     Document Type: Article
Times cited : (57)

References (72)
  • 1
    • 77955878047 scopus 로고    scopus 로고
    • Foodborne illness: is it on the rise?
    • Nyachuba DG, (2010) Foodborne illness: is it on the rise? Nutr Rev 68: 257-269.
    • (2010) Nutr Rev , vol.68 , pp. 257-269
    • Nyachuba, D.G.1
  • 2
    • 84859333074 scopus 로고    scopus 로고
    • National enteric surveillance program (NESP) annual summary 2009
    • Public Health Agency of Canada. Available at (accessed 25 November 2011)
    • National enteric surveillance program (NESP) annual summary 2009. Public Health Agency of Canada. Available at http://www.nml-lnm.gc.ca/NESP-PNSME/surveillance-2009-eng.html (accessed 25 November 2011).
  • 3
    • 79952214271 scopus 로고    scopus 로고
    • Mouse models of Escherichia coli O157:H7 infection and Shiga toxin injection
    • art.no.258185
    • Mohawk KL, O'Brien AD, (2011) Mouse models of Escherichia coli O157:H7 infection and Shiga toxin injection. J Biomed Biotechnol 2011: art.no.258185.
    • (2011) J Biomed Biotechnol , vol.2011
    • Mohawk, K.L.1    O'Brien, A.D.2
  • 5
    • 70450206402 scopus 로고    scopus 로고
    • Perineal swabs reveal effect of super shedders on the transmission of Escherichia coli O157:H7 in commercial feedlots
    • Stephens TP, McAllister TA, Stanford K, (2009) Perineal swabs reveal effect of super shedders on the transmission of Escherichia coli O157:H7 in commercial feedlots. J Anim Sci 87: 4151-4160.
    • (2009) J Anim Sci , vol.87 , pp. 4151-4160
    • Stephens, T.P.1    McAllister, T.A.2    Stanford, K.3
  • 6
    • 73949159257 scopus 로고    scopus 로고
    • Verocytotoxin-producing Escherichia coli (VTEC)
    • Karmali MA, Gannon V, Sargeant JM, (2010) Verocytotoxin-producing Escherichia coli (VTEC). Vet Microbiol 140: 360-370.
    • (2010) Vet Microbiol , vol.140 , pp. 360-370
    • Karmali, M.A.1    Gannon, V.2    Sargeant, J.M.3
  • 7
    • 79954671431 scopus 로고    scopus 로고
    • Bacteriophages as twenty-first century antibacterial tools for food and medicine
    • Maura D, Debarbieux L, (2011) Bacteriophages as twenty-first century antibacterial tools for food and medicine. Appl Microbiol Biotechnol 90: 851-859.
    • (2011) Appl Microbiol Biotechnol , vol.90 , pp. 851-859
    • Maura, D.1    Debarbieux, L.2
  • 9
    • 70349213687 scopus 로고    scopus 로고
    • Bacteriophage biocontrol in animals and meat products
    • Atterbury RJ, (2009) Bacteriophage biocontrol in animals and meat products. Microb Biotechnol 2: 601-612.
    • (2009) Microb Biotechnol , vol.2 , pp. 601-612
    • Atterbury, R.J.1
  • 11
    • 78149423745 scopus 로고    scopus 로고
    • In vivo and Ex vivo evaluations of bacteriophages e11/2 and e4/1c for use in the control of Escherichia coli O157:H7
    • Rivas L, Coffey B, McAuliffe O, McDonnell MJ, Burgess CM, et al. (2010) In vivo and Ex vivo evaluations of bacteriophages e11/2 and e4/1c for use in the control of Escherichia coli O157:H7. Appl Environ Microbiol 76: 7210-7216.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7210-7216
    • Rivas, L.1    Coffey, B.2    McAuliffe, O.3    McDonnell, M.J.4    Burgess, C.M.5
  • 12
    • 68049146037 scopus 로고    scopus 로고
    • Host range and lytic capability of four bacteriophages against bovine and clinical human isolates of Shiga toxin-producing Escherichia coli O157:H7
    • Niu YD, Johnson RP, Xu Y, McAllister TA, Sharma R, et al. (2009) Host range and lytic capability of four bacteriophages against bovine and clinical human isolates of Shiga toxin-producing Escherichia coli O157:H7. J Appl Microbiol 107: 646-656.
    • (2009) J Appl Microbiol , vol.107 , pp. 646-656
    • Niu, Y.D.1    Johnson, R.P.2    Xu, Y.3    McAllister, T.A.4    Sharma, R.5
  • 13
    • 80052819257 scopus 로고    scopus 로고
    • Biocontrol of Listeria monocytogenes and E. coli O157:H7 in meat using phage immobilized on modified cellulose membranes
    • Anany H, Chen W, Pelton R, Griffiths MW, (2011) Biocontrol of Listeria monocytogenes and E. coli O157:H7 in meat using phage immobilized on modified cellulose membranes. Appl Environ Microbiol 77: 6379-6387.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 6379-6387
    • Anany, H.1    Chen, W.2    Pelton, R.3    Griffiths, M.W.4
  • 14
    • 54949144372 scopus 로고    scopus 로고
    • Bacteriophages reduce experimental contamination of hard surfaces, tomato, spinach, broccoli, and ground beef by Escherichia coli O157:H7
    • Abuladze T, Li M, Menetrez MY, Dean T, Senecal A, et al. (2008) Bacteriophages reduce experimental contamination of hard surfaces, tomato, spinach, broccoli, and ground beef by Escherichia coli O157:H7. Appl Environ Microbiol 74: 6230-6238.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 6230-6238
    • Abuladze, T.1    Li, M.2    Menetrez, M.Y.3    Dean, T.4    Senecal, A.5
  • 15
    • 77955933633 scopus 로고    scopus 로고
    • Oral delivery systems for encapsulated bacteriophages targeted Escherichia coli O157: H7 in feedlot cattle
    • Stanford K, McAllister TA, Niu YD, Stephens TP, Mazzocco A, et al. (2010) Oral delivery systems for encapsulated bacteriophages targeted Escherichia coli O157: H7 in feedlot cattle. J Food Prot 73: 1304-1312.
    • (2010) J Food Prot , vol.73 , pp. 1304-1312
    • Stanford, K.1    McAllister, T.A.2    Niu, Y.D.3    Stephens, T.P.4    Mazzocco, A.5
  • 16
    • 61649114491 scopus 로고    scopus 로고
    • Prevalence and impact of bacteriophages on the presence of Escherichia coli O157:H7 in feedlot cattle and their environment
    • Niu YD, McAllister TA, Xu Y, Johnson RP, Stephens TP, et al. (2009) Prevalence and impact of bacteriophages on the presence of Escherichia coli O157:H7 in feedlot cattle and their environment. Appl Environ Microbiol 75: 1271-1278.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 1271-1278
    • Niu, Y.D.1    McAllister, T.A.2    Xu, Y.3    Johnson, R.P.4    Stephens, T.P.5
  • 17
    • 0033768655 scopus 로고    scopus 로고
    • Holins: the protein clocks of bacteriophage infections
    • Wang I-N, Smith DL, Young R, (2000) Holins: the protein clocks of bacteriophage infections. Annu Rev Microbiol 54: 799-825.
    • (2000) Annu Rev Microbiol , vol.54 , pp. 799-825
    • Wang, I.-N.1    Smith, D.L.2    Young, R.3
  • 18
    • 0015579461 scopus 로고
    • Structural proteins of bacteriophage T5
    • Zweig M, Cummings DJ, (1973) Structural proteins of bacteriophage T5. Virology 51: 443-453.
    • (1973) Virology , vol.51 , pp. 443-453
    • Zweig, M.1    Cummings, D.J.2
  • 19
    • 0015851092 scopus 로고
    • Cleavage of head and tail proteins during bacteriophage T5 assembly: selective host involvement in the cleavage of a tail protein
    • Zweig M, Cummings DJ, (1973) Cleavage of head and tail proteins during bacteriophage T5 assembly: selective host involvement in the cleavage of a tail protein. J Mol Biol 80: 505-518.
    • (1973) J Mol Biol , vol.80 , pp. 505-518
    • Zweig, M.1    Cummings, D.J.2
  • 20
    • 46649087608 scopus 로고    scopus 로고
    • Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities
    • Boulanger P, Jacquot P, Plancon L, Chami M, Engel A, et al. (2008) Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities. J Biol Chem 283: 13556-13564.
    • (2008) J Biol Chem , vol.283 , pp. 13556-13564
    • Boulanger, P.1    Jacquot, P.2    Plancon, L.3    Chami, M.4    Engel, A.5
  • 21
    • 80053574877 scopus 로고    scopus 로고
    • Naturally resident and exogenously applied T4-like and T5-like bacteriophages can reduce Escherichia coli O157:H7 levels in sheep guts
    • Raya RR, Oot RA, Moore-Maley B, Wieland S, Callaway TR, et al. (2011) Naturally resident and exogenously applied T4-like and T5-like bacteriophages can reduce Escherichia coli O157:H7 levels in sheep guts. Bacteriophage 1: 15-24.
    • (2011) Bacteriophage , vol.1 , pp. 15-24
    • Raya, R.R.1    Oot, R.A.2    Moore-Maley, B.3    Wieland, S.4    Callaway, T.R.5
  • 22
    • 65449143235 scopus 로고    scopus 로고
    • The genome and proteome of a virulent Escherichia coli O157:H7 bacteriophage closely resembling Salmonella phage Felix O1
    • Villegas A, She YM, Kropinski AM, Lingohr EJ, Mazzocco A, et al. (2009) The genome and proteome of a virulent Escherichia coli O157:H7 bacteriophage closely resembling Salmonella phage Felix O1. Virol J 6: 41.
    • (2009) Virol J , vol.6 , pp. 41
    • Villegas, A.1    She, Y.M.2    Kropinski, A.M.3    Lingohr, E.J.4    Mazzocco, A.5
  • 23
    • 80052057840 scopus 로고    scopus 로고
    • T4-Like genome organization of the Escherichia coli O157:H7 lytic phage AR1
    • Liao WC, Ng WV, Lin IH, Syu WJ, Liu TT, et al. (2011) T4-Like genome organization of the Escherichia coli O157:H7 lytic phage AR1. J Virol 85: 6567-6578.
    • (2011) J Virol , vol.85 , pp. 6567-6578
    • Liao, W.C.1    Ng, W.V.2    Lin, I.H.3    Syu, W.J.4    Liu, T.T.5
  • 25
    • 12344251589 scopus 로고    scopus 로고
    • Complete genome sequence of bacteriophage T5
    • Wang J, Jiang Y, Vincent M, Sun Y, Yu H, et al. (2005) Complete genome sequence of bacteriophage T5. Virology 332: 45-65.
    • (2005) Virology , vol.332 , pp. 45-65
    • Wang, J.1    Jiang, Y.2    Vincent, M.3    Sun, Y.4    Yu, H.5
  • 26
    • 79953192536 scopus 로고    scopus 로고
    • Characterization of a T5-like coliphage, SPC35, and differential development of resistance to SPC35 in Salmonella enterica serovar Typhimurium and Escherichia coli
    • Kim M, Ryu S, (2011) Characterization of a T5-like coliphage, SPC35, and differential development of resistance to SPC35 in Salmonella enterica serovar Typhimurium and Escherichia coli. Appl Environ Microbiol 77: 2042-2050.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 2042-2050
    • Kim, M.1    Ryu, S.2
  • 27
    • 56649094151 scopus 로고    scopus 로고
    • Identification of host receptor and receptor-binding module of a newly sequenced T5-like phage EPS7
    • Hong J, Kim KP, Heu S, Lee SJ, Adhya S, et al. (2008) Identification of host receptor and receptor-binding module of a newly sequenced T5-like phage EPS7. FEMS Microbiol Lett 289: 202-209.
    • (2008) FEMS Microbiol Lett , vol.289 , pp. 202-209
    • Hong, J.1    Kim, K.P.2    Heu, S.3    Lee, S.J.4    Adhya, S.5
  • 29
    • 70350453748 scopus 로고    scopus 로고
    • Group I introns and inteins: Disparate origins but convergent parasitic strategies
    • Raghavan R, Minnick MF, (2009) Group I introns and inteins: Disparate origins but convergent parasitic strategies. J Bacteriol 191: 6193-6202.
    • (2009) J Bacteriol , vol.191 , pp. 6193-6202
    • Raghavan, R.1    Minnick, M.F.2
  • 30
    • 78649479393 scopus 로고    scopus 로고
    • Mobile DNA elements in T4 and related phages
    • Edgell DR, Gibb EA, Belfort M, (2010) Mobile DNA elements in T4 and related phages. Virol J 7: 290.
    • (2010) Virol J , vol.7 , pp. 290
    • Edgell, D.R.1    Gibb, E.A.2    Belfort, M.3
  • 31
    • 34347377028 scopus 로고    scopus 로고
    • Insertion of a homing endonuclease creates a genes-in-pieces ribonucleotide reductase that retains function
    • Friedrich NC, Torrents E, Gibb EA, Sahlin M, Sjöberg BM, et al. (2007) Insertion of a homing endonuclease creates a genes-in-pieces ribonucleotide reductase that retains function. Proc Natl Acad Sci U S A 104: 6176-6181.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 6176-6181
    • Friedrich, N.C.1    Torrents, E.2    Gibb, E.A.3    Sahlin, M.4    Sjöberg, B.M.5
  • 32
    • 34547622468 scopus 로고    scopus 로고
    • FepA- and TonB-dependent bacteriophage H8: receptor binding and genomic sequence
    • Rabsch W, Ma L, Wiley G, Najar FZ, Kaserer W, et al. (2007) FepA- and TonB-dependent bacteriophage H8: receptor binding and genomic sequence. J Bacteriol 189: 5658-5674.
    • (2007) J Bacteriol , vol.189 , pp. 5658-5674
    • Rabsch, W.1    Ma, L.2    Wiley, G.3    Najar, F.Z.4    Kaserer, W.5
  • 33
    • 1942486000 scopus 로고    scopus 로고
    • Ecology of prokaryotic viruses
    • Weinbauer MG, (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28: 127-181.
    • (2004) FEMS Microbiol Rev , vol.28 , pp. 127-181
    • Weinbauer, M.G.1
  • 34
    • 0020042914 scopus 로고
    • Polymannose O-antigens of Escherichia coli, the binding sites for the reversible adsorption of bacteriophage T5+ via the L-shaped tail fibers
    • Heller K, Braun V, (1982) Polymannose O-antigens of Escherichia coli, the binding sites for the reversible adsorption of bacteriophage T5+ via the L-shaped tail fibers. J Virol 41: 222-227.
    • (1982) J Virol , vol.41 , pp. 222-227
    • Heller, K.1    Braun, V.2
  • 36
    • 1842455969 scopus 로고    scopus 로고
    • Population and evolutionary dynamics of phage therapy
    • Levin BR, Bull JJ, (2004) Population and evolutionary dynamics of phage therapy. Nat Rev Microbiol 2: 166-173.
    • (2004) Nat Rev Microbiol , vol.2 , pp. 166-173
    • Levin, B.R.1    Bull, J.J.2
  • 38
    • 69849094651 scopus 로고    scopus 로고
    • Bacteriophage T5
    • 2nd Ed, In: Calendar R, editors, New York, NY, Oxford University Press
    • Sayers JR, (2006) Bacteriophage T5. In: Calendar R, editors. The bacteriophages. 2nd ed New York, NY Oxford University Press pp. 268-276.
    • (2006) The Bacteriophages , pp. 268-276
    • Sayers, J.R.1
  • 40
    • 48249141201 scopus 로고
    • The origin of phosphorus in the T1, T5, T6, and T7 bacteriophages of Escherichia coli
    • Labaw LW, (1953) The origin of phosphorus in the T1, T5, T6, and T7 bacteriophages of Escherichia coli. J Bacteriol 66: 429-436.
    • (1953) J Bacteriol , vol.66 , pp. 429-436
    • Labaw, L.W.1
  • 41
    • 77954377119 scopus 로고    scopus 로고
    • A novel nucleotide kinase encoded by gene 1.7 of bacteriophage T7
    • Tran NQ, Lee SJ, Richardson CC, Tabor S, (2010) A novel nucleotide kinase encoded by gene 1.7 of bacteriophage T7. Mol Microbiol 77: 492-504.
    • (2010) Mol Microbiol , vol.77 , pp. 492-504
    • Tran, N.Q.1    Lee, S.J.2    Richardson, C.C.3    Tabor, S.4
  • 42
    • 0014488277 scopus 로고
    • Effect of hydroxyurea on replication of bacteriophage T4 in Escherichia coli
    • Warner HR, Hobbs MD, (1969) Effect of hydroxyurea on replication of bacteriophage T4 in Escherichia coli. J Virol 3: 331-336.
    • (1969) J Virol , vol.3 , pp. 331-336
    • Warner, H.R.1    Hobbs, M.D.2
  • 44
    • 79957898066 scopus 로고    scopus 로고
    • Evolutionary trends of GC/AT distribution patterns in promoters
    • Calistri E, Livi R, Buiatti M, (2011) Evolutionary trends of GC/AT distribution patterns in promoters. Mol Phylogenet and Evol 60: 228-235.
    • (2011) Mol Phylogenet and Evol , vol.60 , pp. 228-235
    • Calistri, E.1    Livi, R.2    Buiatti, M.3
  • 45
    • 28944439650 scopus 로고    scopus 로고
    • Extended upstream A-T sequence increases T7 promoter strength
    • Tang GQ, Bandwar RP, Patel SS, (2005) Extended upstream A-T sequence increases T7 promoter strength. J Biol Chem 280: 40707-40713.
    • (2005) J Biol Chem , vol.280 , pp. 40707-40713
    • Tang, G.Q.1    Bandwar, R.P.2    Patel, S.S.3
  • 46
    • 34948860729 scopus 로고    scopus 로고
    • Causes for the intriguing presence of tRNAs in phages
    • Bailly-Bechet M, Vergassola M, Rocha E, (2007) Causes for the intriguing presence of tRNAs in phages. Genome Res 17: 1486-1495.
    • (2007) Genome Res , vol.17 , pp. 1486-1495
    • Bailly-Bechet, M.1    Vergassola, M.2    Rocha, E.3
  • 47
    • 0036606915 scopus 로고    scopus 로고
    • Base composition bias might result from competition for metabolic resources
    • Rocha EPC, Danchin A, (2002) Base composition bias might result from competition for metabolic resources. Trends Genet 18: 291-294.
    • (2002) Trends Genet , vol.18 , pp. 291-294
    • Rocha, E.P.C.1    Danchin, A.2
  • 48
    • 42249089510 scopus 로고    scopus 로고
    • Bacteriophage isolated from feedlot cattle can reduce Escherichia coli O157:H7 populations in ruminant gastrointestinal tracts
    • Callaway TR, Edrington TS, Brabban AD, Anderson RC, Rossman ML, et al. (2008) Bacteriophage isolated from feedlot cattle can reduce Escherichia coli O157:H7 populations in ruminant gastrointestinal tracts. Foodborne Pathog Dis 5: 183-191.
    • (2008) Foodborne Pathog Dis , vol.5 , pp. 183-191
    • Callaway, T.R.1    Edrington, T.S.2    Brabban, A.D.3    Anderson, R.C.4    Rossman, M.L.5
  • 49
    • 0035407645 scopus 로고    scopus 로고
    • Antacid increases survival of Vibrio vulnificus and Vibrio vulnificus phage in a gastrointestinal model
    • Koo J, Marshall DL, DePaola A, (2001) Antacid increases survival of Vibrio vulnificus and Vibrio vulnificus phage in a gastrointestinal model. Appl Environ Microbiol 67: 2895-2902.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2895-2902
    • Koo, J.1    Marshall, D.L.2    DePaola, A.3
  • 50
    • 62749126646 scopus 로고    scopus 로고
    • Evaluation of bacteriophages for prevention and treatment of diarrhea due to experimental enterotoxigenic Escherichia coli O149 infection of pigs
    • Jamalludeen N, Johnson RP, Shewen PE, Gyles CL, (2009) Evaluation of bacteriophages for prevention and treatment of diarrhea due to experimental enterotoxigenic Escherichia coli O149 infection of pigs. Vet Microbiol 136: 135-141.
    • (2009) Vet Microbiol , vol.136 , pp. 135-141
    • Jamalludeen, N.1    Johnson, R.P.2    Shewen, P.E.3    Gyles, C.L.4
  • 51
    • 49449086236 scopus 로고    scopus 로고
    • Microencapsulation of bacteriophage Felix O1 into chitosan-alginate microspheres for oral delivery
    • Ma Y, Pacan JC, Wang Q, Xu Y, Huang X, et al. (2008) Microencapsulation of bacteriophage Felix O1 into chitosan-alginate microspheres for oral delivery. Appl Environ Microbiol 74: 4799-4805.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4799-4805
    • Ma, Y.1    Pacan, J.C.2    Wang, Q.3    Xu, Y.4    Huang, X.5
  • 53
    • 0021367325 scopus 로고
    • Standard reference strains of Escherichia coli from natural populations
    • Ochman H, Selander RK, (1984) Standard reference strains of Escherichia coli from natural populations. J Bacteriol 157: 690-693.
    • (1984) J Bacteriol , vol.157 , pp. 690-693
    • Ochman, H.1    Selander, R.K.2
  • 54
    • 62449149827 scopus 로고    scopus 로고
    • Measurement of the rate of attachment of bacteriophage to cells
    • Kropinski AM, (2009) Measurement of the rate of attachment of bacteriophage to cells. Methods Mol Biol 501: 151-155.
    • (2009) Methods Mol Biol , vol.501 , pp. 151-155
    • Kropinski, A.M.1
  • 55
    • 62449315046 scopus 로고    scopus 로고
    • Determination of bacteriophage genome size by pulsed-field gel electrophoresis
    • Lingohr E, Frost S, Johnson RP, (2009) Determination of bacteriophage genome size by pulsed-field gel electrophoresis. Methods Mol Biol 502: 19-25.
    • (2009) Methods Mol Biol , vol.502 , pp. 19-25
    • Lingohr, E.1    Frost, S.2    Johnson, R.P.3
  • 56
    • 25444458848 scopus 로고    scopus 로고
    • AutoFACT: an automatic functional annotation and classification tool
    • Koski LB, Gray MW, Lang BF, Burger G, (2005) AutoFACT: an automatic functional annotation and classification tool. BMC Bioinformatics 6: 151.
    • (2005) BMC Bioinformatics , vol.6 , pp. 151
    • Koski, L.B.1    Gray, M.W.2    Lang, B.F.3    Burger, G.4
  • 57
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 59
    • 1242297827 scopus 로고    scopus 로고
    • ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
    • Laslett D, Canback B, (2004) ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res 32: 11-16.
    • (2004) Nucleic Acids Res , vol.32 , pp. 11-16
    • Laslett, D.1    Canback, B.2
  • 60
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR, (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 61
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M, (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 64
    • 0031614678 scopus 로고    scopus 로고
    • A hidden Markov model for predicting transmembrane helices in protein sequences
    • Sonnhammer EL, von Heijne G, Krogh A, (1998) A hidden Markov model for predicting transmembrane helices in protein sequences. Proc Int Conf Intell Syst Mol Biol 6: 175-182.
    • (1998) Proc Int Conf Intell Syst Mol Biol , vol.6 , pp. 175-182
    • Sonnhammer, E.L.1    von Heijne, G.2    Krogh, A.3
  • 65
    • 2142657817 scopus 로고    scopus 로고
    • A combined transmembrane topology and signal peptide prediction method
    • Kall L, Krogh A, Sonnhammer EL, (2004) A combined transmembrane topology and signal peptide prediction method. J Mol Biol 338: 1027-1036.
    • (2004) J Mol Biol , vol.338 , pp. 1027-1036
    • Kall, L.1    Krogh, A.2    Sonnhammer, E.L.3
  • 66
    • 0036557845 scopus 로고    scopus 로고
    • Basic charge clusters and predictions of membrane protein topology
    • Juretic D, Zoranic L, Zucic D, (2002) Basic charge clusters and predictions of membrane protein topology. J Chem Inf Comput Sci 42: 620-632.
    • (2002) J Chem Inf Comput Sci , vol.42 , pp. 620-632
    • Juretic, D.1    Zoranic, L.2    Zucic, D.3
  • 67
    • 0031826040 scopus 로고    scopus 로고
    • SOSUI: classification and secondary structure prediction system for membrane proteins
    • Hirokawa T, Boon-Chieng S, Mitaku S, (1998) SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14: 378-379.
    • (1998) Bioinformatics , vol.14 , pp. 378-379
    • Hirokawa, T.1    Boon-Chieng, S.2    Mitaku, S.3
  • 68
    • 0026356891 scopus 로고
    • Predicting coiled coils from protein sequences
    • Lupas A, van Dyke M, Stock J, (1991) Predicting coiled coils from protein sequences. Science 252: 1162-1164.
    • (1991) Science , vol.252 , pp. 1162-1164
    • Lupas, A.1    van Dyke, M.2    Stock, J.3
  • 70
    • 77956193448 scopus 로고    scopus 로고
    • progressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement
    • art.no.e11147
    • Darling AE, Mau B, Perna NT, (2010) progressiveMauve: Multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5: art.no.e11147.
    • (2010) PLoS One , vol.5
    • Darling, A.E.1    Mau, B.2    Perna, N.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.