-
1
-
-
54949144372
-
Bacteriophages reduce experimental contamination of hard surfaces, tomato, spinach, broccoli, and ground beef by Escherichia coli O157:H7
-
Abuladze, T., et al. 2008. Bacteriophages reduce experimental contamination of hard surfaces, tomato, spinach, broccoli, and ground beef by Escherichia coli O157:H7. Appl. Environ. Microbiol. 74:6230-6238.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 6230-6238
-
-
Abuladze, T.1
-
2
-
-
33846408740
-
5500 phages examined in the electron microscope
-
Ackermann, H. W. 2007. 5500 phages examined in the electron microscope. Arch. Virol. 152:227-243.
-
(2007)
Arch. Virol.
, vol.152
, pp. 227-243
-
-
Ackermann, H.W.1
-
4
-
-
0031445609
-
A catalogue of T4-type bacteriophages
-
Ackermann, H. W., and H. M. Krisch. 1997. A catalogue of T4-type bacteriophages. Arch. Virol. 142:2329-2345.
-
(1997)
Arch. Virol.
, vol.142
, pp. 2329-2345
-
-
Ackermann, H.W.1
Krisch, H.M.2
-
5
-
-
77958484635
-
Mobile regulatory cassettes mediate modular shuffling in T4-type phage genomes
-
Arbiol, C., A. M. Comeau, M. Kutateladze, R. Adamia, and H. M. Krisch. 2010. Mobile regulatory cassettes mediate modular shuffling in T4-type phage genomes. Genome Biol. Evol. 2010:140-152.
-
(2010)
Genome Biol. Evol.
, vol.2010
, pp. 140-152
-
-
Arbiol, C.1
Comeau, A.M.2
Kutateladze, M.3
Adamia, R.4
Krisch, H.M.5
-
6
-
-
12744271922
-
BlastAlign: a program that uses Blast to align problematic nucleotide sequences
-
Belshaw, R., and A. Katzourakis. 2005. BlastAlign: a program that uses Blast to align problematic nucleotide sequences. Bioinformatics 21:122-123.
-
(2005)
Bioinformatics
, vol.21
, pp. 122-123
-
-
Belshaw, R.1
Katzourakis, A.2
-
7
-
-
10044253266
-
Comparative genomics of the T4-like Escherichia coli phage JS98: implications for the evolution of T4 phages
-
Chibani-Chennoufi, S., C. Canchaya, A. Bruttin, and H. Brussow. 2004. Comparative genomics of the T4-like Escherichia coli phage JS98: implications for the evolution of T4 phages. J. Bacteriol. 186:8276-8286.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 8276-8286
-
-
Chibani-Chennoufi, S.1
Canchaya, C.2
Bruttin, A.3
Brussow, H.4
-
8
-
-
34247602006
-
Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery
-
Comeau, A. M., C. Bertrand, A. Letarov, F. Tetart, and H. M. Krisch. 2007. Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 362:384-396.
-
(2007)
Virology
, vol.362
, pp. 384-396
-
-
Comeau, A.M.1
Bertrand, C.2
Letarov, A.3
Tetart, F.4
Krisch, H.M.5
-
9
-
-
22544470014
-
War is peace-dispatches from the bacterial and phage killing fields
-
Comeau, A. M., and H. M. Krisch. 2005. War is peace-dispatches from the bacterial and phage killing fields. Curr. Opin. Microbiol. 8:488-494.
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 488-494
-
-
Comeau, A.M.1
Krisch, H.M.2
-
10
-
-
67349224692
-
T4 phages against Escherichia coli diarrhea: potential and problems
-
Denou, E., et al. 2009. T4 phages against Escherichia coli diarrhea: potential and problems. Virology 388:21-30.
-
(2009)
Virology
, vol.388
, pp. 21-30
-
-
Denou, E.1
-
11
-
-
0036241904
-
Snapshot of the genome of the pseudo-T-even bacteriophage RB49
-
Desplats, C., C. Dez, F. Tetart, H. Eleaume, and H. M. Krisch. 2002. Snapshot of the genome of the pseudo-T-even bacteriophage RB49. J. Bacteriol. 184:2789-2804.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 2789-2804
-
-
Desplats, C.1
Dez, C.2
Tetart, F.3
Eleaume, H.4
Krisch, H.M.5
-
12
-
-
0038730764
-
The diversity and evolution of the T4-type bacteriophages
-
Desplats, C., and H. M. Krisch. 2003. The diversity and evolution of the T4-type bacteriophages. Res. Microbiol. 154:259-267.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 259-267
-
-
Desplats, C.1
Krisch, H.M.2
-
13
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E., and S. P. Gygi. 2007. Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4:207-214.
-
(2007)
Nat. Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
14
-
-
0030775588
-
Strategies for whole microbial genome sequencing and analysis
-
Fraser, C. M., and R. D. Fleischmann. 1997. Strategies for whole microbial genome sequencing and analysis. Electrophoresis 18:1207-1216.
-
(1997)
Electrophoresis
, vol.18
, pp. 1207-1216
-
-
Fraser, C.M.1
Fleischmann, R.D.2
-
15
-
-
0020264478
-
Roles of cell surface components of Escherichia coli K-12 in bacteriophage T4 infection: interaction of tail core with phospholipids
-
Furukawa, H., and S. Mizushima. 1982. Roles of cell surface components of Escherichia coli K-12 in bacteriophage T4 infection: interaction of tail core with phospholipids. J. Bacteriol. 150:916-924.
-
(1982)
J. Bacteriol.
, vol.150
, pp. 916-924
-
-
Furukawa, H.1
Mizushima, S.2
-
16
-
-
33745589744
-
Proteome analysis of Halobacterium sp NRC-1 facilitated by the biomodule analysis tool BMSorter
-
Gan, R. R., et al. 2006. Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter. Mol. Cell. Proteomics 5:987-997.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 987-997
-
-
Gan, R.R.1
-
17
-
-
0141705427
-
Morphological, host range, and genetic characterization of two coliphages
-
Goodridge, L., A. Gallaccio, and M. W. Griffiths. 2003. Morphological, host range, and genetic characterization of two coliphages. Appl. Environ. Microbiol. 69:5364-5371.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5364-5371
-
-
Goodridge, L.1
Gallaccio, A.2
Griffiths, M.W.3
-
18
-
-
13444252847
-
Rfam: annotating non-coding RNAs in complete genomes
-
Griffiths-Jones, S., et al. 2005. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res. 33:D121-D124.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Griffiths-Jones, S.1
-
19
-
-
30844454225
-
ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes
-
Guo, F. B., and C. T. Zhang. 2006. ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes. BMC Bioinformatics 7:9.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 9
-
-
Guo, F.B.1
Zhang, C.T.2
-
20
-
-
34248680659
-
Shiga toxin-producing Escherichia coli: an overview
-
Gyles, C. L. 2007. Shiga toxin-producing Escherichia coli: an overview. J. Anim. Sci. 85:E45-E62.
-
(2007)
J. Anim. Sci.
, vol.85
-
-
Gyles, C.L.1
-
21
-
-
37349114483
-
Comparative genomics of Bacillus thuringiensis phage 0305phi8-36: defining patterns of descent in a novel ancient phage lineage
-
Hardies, S. C., J. A. Thomas, and P. Serwer. 2007. Comparative genomics of Bacillus thuringiensis phage 0305phi8-36: defining patterns of descent in a novel ancient phage lineage. Virol. J. 4:97.
-
(2007)
Virol. J.
, vol.4
, pp. 97
-
-
Hardies, S.C.1
Thomas, J.A.2
Serwer, P.3
-
22
-
-
0027984799
-
Determinants of receptor specificity of coliphages of the T4 family A chaperone alters the host range
-
Hashemolhosseini, S., D. Montag, L. Kramer, and U. Henning. 1994. Determinants of receptor specificity of coliphages of the T4 family. A chaperone alters the host range. J. Mol. Biol. 241:524-533.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 524-533
-
-
Hashemolhosseini, S.1
Montag, D.2
Kramer, L.3
Henning, U.4
-
23
-
-
0030993170
-
Molecular typing of enterohemorrhagic Escherichia coli O157:H7 isolates in Japan by using pulsed-field gel electrophoresis
-
Izumiya, H., et al. 1997. Molecular typing of enterohemorrhagic Escherichia coli O157:H7 isolates in Japan by using pulsed-field gel electrophoresis. J. Clin. Microbiol. 35:1675-1680.
-
(1997)
J. Clin. Microbiol.
, vol.35
, pp. 1675-1680
-
-
Izumiya, H.1
-
24
-
-
73949159257
-
Verocytotoxin-producing Escherichia coli (VTEC)
-
Karmali, M. A., V. Gannon, and J. M. Sargeant. 2010. Verocytotoxin-producing Escherichia coli (VTEC). Vet. Microbiol. 140:360-370.
-
(2010)
Vet. Microbiol.
, vol.140
, pp. 360-370
-
-
Karmali, M.A.1
Gannon, V.2
Sargeant, J.M.3
-
25
-
-
0009716537
-
Functions and properties related to the tail fibers of bacteriophage T4
-
. 1965. Functions and properties related to the tail fibers of bacteriophage T4. Virology 26:419-440.
-
(1965)
Virology
, vol.26
, pp. 419-440
-
-
Kellenberger, E.1
-
27
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A., A. I. Nesvizhskii, E. Kolker, and R. Aebersold. 2002. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem. 74:5383-5392.
-
(2002)
Anal. Chem.
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
28
-
-
0032851940
-
Biocontrol of Escherichia coli O157 with O157-specific bacteriophages
-
Kudva, I. T., S. Jelacic, P. I. Tarr, P. Youderian, and C. J. Hovde. 1999. Biocontrol of Escherichia coli O157 with O157-specific bacteriophages. Appl. Environ. Microbiol. 65:3767-3773.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3767-3773
-
-
Kudva, I.T.1
Jelacic, S.2
Tarr, P.I.3
Youderian, P.4
Hovde, C.J.5
-
29
-
-
0027056781
-
Synonymous codon preferences in bacteriophage T4: a distinctive use of transfer RNAs from T4 and from its host Escherichia coli
-
Kunisawa, T. 1992. Synonymous codon preferences in bacteriophage T4: a distinctive use of transfer RNAs from T4 and from its host Escherichia coli. J. Theor. Biol. 159:287-298.
-
(1992)
J. Theor. Biol.
, vol.159
, pp. 287-298
-
-
Kunisawa, T.1
-
30
-
-
17044437752
-
The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages
-
Kwan, T., J. Liu, M. DuBow, P. Gros, and J. Pelletier. 2005. The complete genomes and proteomes of 27 Staphylococcus aureus bacteriophages. Proc. Natl. Acad. Sci. U. S. A. 102:5174-5179.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 5174-5179
-
-
Kwan, T.1
Liu, J.2
DuBow, M.3
Gros, P.4
Pelletier, J.5
-
31
-
-
33646080359
-
I-BasI and I-HmuI: two phage intron-encoded endonucleases with homologous DNA recognition sequences but distinct DNA specificities
-
Landthaler, M., B. W. Shen, B. L. Stoddard, and D. A. Shub. 2006. I-BasI and I-HmuI: two phage intron-encoded endonucleases with homologous DNA recognition sequences but distinct DNA specificities. J. Mol. Biol. 358:1137-1151.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 1137-1151
-
-
Landthaler, M.1
Shen, B.W.2
Stoddard, B.L.3
Shub, D.A.4
-
32
-
-
0033536050
-
Unexpected abundance of selfsplicing introns in the genome of bacteriophage Twort: introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes
-
Landthaler, M., and D. A. Shub. 1999. Unexpected abundance of selfsplicing introns in the genome of bacteriophage Twort: introns in multiple genes, a single gene with three introns, and exon skipping by group I ribozymes. Proc. Natl. Acad. Sci. U. S. A. 96:7005-7010.
-
(1999)
Proc. Natl. Acad. Sci. U. S. A.
, vol.96
, pp. 7005-7010
-
-
Landthaler, M.1
Shub, D.A.2
-
33
-
-
1242297827
-
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
-
Laslett, D., and B. Canback. 2004. ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res. 32: 11-16.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 11-16
-
-
Laslett, D.1
Canback, B.2
-
34
-
-
70449380104
-
Classification of Myoviridae bacteriophages using protein sequence similarity
-
Lavigne, R., et al. 2009. Classification of Myoviridae bacteriophages using protein sequence similarity. BMC Microbiol. 9:224.
-
(2009)
BMC Microbiol
, vol.9
, pp. 224
-
-
Lavigne, R.1
-
35
-
-
0345256391
-
Structure and morphogenesis of bacteriophage T4
-
Leiman, P. G., S. Kanamaru, V. V. Mesyanzhinov, F. Arisaka, and M. G. Rossmann. 2003. Structure and morphogenesis of bacteriophage T4. Cell. Mol. Life Sci. 60:2356-2370.
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 2356-2370
-
-
Leiman, P.G.1
Kanamaru, S.2
Mesyanzhinov, V.V.3
Arisaka, F.4
Rossmann, M.G.5
-
36
-
-
65849358990
-
Construction of a stx2 deletion mutant of Shiga toxin 2 phage phiMin27 and its infectious properties
-
Liangke, S., Y. Yaxian, and L. Chengping. 2008. Construction of a stx2 deletion mutant of Shiga toxin 2 phage phiMin27 and its infectious properties. Wei Sheng Wu Xue Bao 48:1227-1233.
-
(2008)
Wei Sheng Wu Xue Bao
, vol.48
, pp. 1227-1233
-
-
Liangke, S.1
Yaxian, Y.2
Chengping, L.3
-
37
-
-
0036938279
-
Analysis of the baseplate region of phage AR1 that specifically infects Escherichia coli O157:H7
-
Liao, C. P., and W. Syu, Jr. 2002. Analysis of the baseplate region of phage AR1 that specifically infects Escherichia coli O157:H7. J. Microbiol. Immunol. Infect. 35:269-271.
-
(2002)
J. Microbiol. Immunol. Infect.
, vol.35
, pp. 269-271
-
-
Liao, C.P.1
Syu Jr., W.2
-
38
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
39
-
-
0032519353
-
GeneMark.hmm: new solutions for gene finding
-
Lukashin, A. V., and M. Borodovsky. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res. 26:1107-1115.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
40
-
-
0033387903
-
Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak
-
Makino, K., et al. 1999. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Genes Genet. Syst. 74:227-239.
-
(1999)
Genes Genet. Syst.
, vol.74
, pp. 227-239
-
-
Makino, K.1
-
41
-
-
17644410730
-
The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains
-
Mann, N. H., et al. 2005. The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains. J. Bacteriol. 187: 3188-3200.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3188-3200
-
-
Mann, N.H.1
-
42
-
-
24044455869
-
Genome sequencing in microfabricated highdensity picolitre reactors
-
Margulies, M., et al. 2005. Genome sequencing in microfabricated highdensity picolitre reactors. Nature 437:376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
-
43
-
-
0028863868
-
A group I intron in the terminase gene of Lactobacillus delbrueckii subsp. lactis phage LL-H
-
Mikkonen, M., and T. Alatossava. 1995. A group I intron in the terminase gene of Lactobacillus delbrueckii subsp. lactis phage LL-H. Microbiology 141:2183-2190.
-
(1995)
Microbiology
, vol.141
, pp. 2183-2190
-
-
Mikkonen, M.1
Alatossava, T.2
-
44
-
-
0041386480
-
Complete genome sequence of the broad-hostrange vibriophage KVP40: comparative genomics of a T4-related bacteriophage
-
Miller, E. S., et al. 2003. Complete genome sequence of the broad-hostrange vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J. Bacteriol. 185:5220-5233.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5220-5233
-
-
Miller, E.S.1
-
45
-
-
0037335488
-
Bacteriophage T4 genome
-
Miller, E. S., et al. 2003. Bacteriophage T4 genome. Microbiol. Mol. Biol. Rev. 67:86-156.
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 86-156
-
-
Miller, E.S.1
-
46
-
-
0023677064
-
Genetic identification of the pore domain of the OmpC porin of Escherichia coli K-12
-
Misra, R., and S. A. Benson. 1988. Genetic identification of the pore domain of the OmpC porin of Escherichia coli K-12. J. Bacteriol. 170:3611-3617.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 3611-3617
-
-
Misra, R.1
Benson, S.A.2
-
47
-
-
0033620983
-
Sequence analysis of Stx2-converting phage VT2-Sa shows a great divergence in early regulation and replication regions
-
Miyamoto, H., et al. 1999. Sequence analysis of Stx2-converting phage VT2-Sa shows a great divergence in early regulation and replication regions. DNA Res. 6:235-240.
-
(1999)
DNA Res
, vol.6
, pp. 235-240
-
-
Miyamoto, H.1
-
48
-
-
0025641363
-
Receptor-recognizing proteins of T-even type bacteriophages The receptor-recognizing area of proteins 37 of phages T4 TuIa and TuIb
-
Montag, D., S. Hashemolhosseini, and U. Henning. 1990. Receptor-recognizing proteins of T-even type bacteriophages. The receptor-recognizing area of proteins 37 of phages T4 TuIa and TuIb. J. Mol. Biol. 216:327-334.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 327-334
-
-
Montag, D.1
Hashemolhosseini, S.2
Henning, U.3
-
49
-
-
0037150036
-
Characterization of a virulent bacteriophage specific for Escherichia coli O157:H7 and analysis of its cellular receptor and two tail fiber genes
-
Morita, M., et al. 2002. Characterization of a virulent bacteriophage specific for Escherichia coli O157:H7 and analysis of its cellular receptor and two tail fiber genes. FEMS Microbiol. Lett. 211:77-83.
-
(2002)
FEMS Microbiol. Lett.
, vol.211
, pp. 77-83
-
-
Morita, M.1
-
50
-
-
0030598926
-
Capsid targeting sequence targets foreign proteins into bacteriophage T4 and permits proteolytic processing
-
Mullaney, J. M., and L. W. Black. 1996. Capsid targeting sequence targets foreign proteins into bacteriophage T4 and permits proteolytic processing. J. Mol. Biol. 261:372-385.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 372-385
-
-
Mullaney, J.M.1
Black, L.W.2
-
51
-
-
0018188664
-
Role of lipopolysaccharide and outer membrane protein of Escherichia coli K-12 in the receptor activity for bacteriophage T4
-
Mutoh, N., H. Furukawa, and S. Mizushima. 1978. Role of lipopolysaccharide and outer membrane protein of Escherichia coli K-12 in the receptor activity for bacteriophage T4. J. Bacteriol. 136:693-699.
-
(1978)
J. Bacteriol.
, vol.136
, pp. 693-699
-
-
Mutoh, N.1
Furukawa, H.2
Mizushima, S.3
-
52
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A. I., A. Keller, E. Kolker, and R. Aebersold. 2003. A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 75:4646-4658.
-
(2003)
Anal. Chem.
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
53
-
-
68049146037
-
Host range and lytic capability of four bacteriophages against bovine and clinical human isolates of Shiga toxin-producing Escherichia coli O157:H7
-
Niu, Y. D., et al. 2009. Host range and lytic capability of four bacteriophages against bovine and clinical human isolates of Shiga toxin-producing Escherichia coli O157:H7. J. Appl. Microbiol. 107:646-656.
-
(2009)
J. Appl. Microbiol.
, vol.107
, pp. 646-656
-
-
Niu, Y.D.1
-
54
-
-
41849136527
-
Comparison of fecal versus rectoanal mucosal swab sampling for detecting Escherichia coli O157:H7 in experimentally inoculated cattle used in assessing bacteriophage as a mitigation strategy
-
Niu, Y. D., et al. 2008. Comparison of fecal versus rectoanal mucosal swab sampling for detecting Escherichia coli O157:H7 in experimentally inoculated cattle used in assessing bacteriophage as a mitigation strategy. J. Food Prot. 71:691-698.
-
(2008)
J. Food Prot.
, vol.71
, pp. 691-698
-
-
Niu, Y.D.1
-
55
-
-
33745913143
-
Genetic diversity among five T4-like bacteriophages
-
Nolan, J. M., V. Petrov, C. Bertrand, H. M. Krisch, and J. D. Karam. 2006. Genetic diversity among five T4-like bacteriophages. Virol. J. 3:30.
-
(2006)
Virol. J.
, vol.3
, pp. 30
-
-
Nolan, J.M.1
Petrov, V.2
Bertrand, C.3
Krisch, H.M.4
Karam, J.D.5
-
56
-
-
2942526906
-
Evaluation of a cocktail of three bacteriophages for biocontrol of Escherichia coli O157:H7
-
O'Flynn, G., R. P. Ross, G. F. Fitzgerald, and A. Coffey. 2004. Evaluation of a cocktail of three bacteriophages for biocontrol of Escherichia coli O157:H7. Appl. Environ. Microbiol. 70:3417-3424.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3417-3424
-
-
O'Flynn, G.1
Ross, R.P.2
Fitzgerald, G.F.3
Coffey, A.4
-
57
-
-
0019812432
-
DNA sequence of the tail fibre genes 36 and 37 of bacteriophage T4
-
Oliver, D. B., and R. A. Crowther. 1981. DNA sequence of the tail fibre genes 36 and 37 of bacteriophage T4. J. Mol. Biol. 153:545-568.
-
(1981)
J. Mol. Biol.
, vol.153
, pp. 545-568
-
-
Oliver, D.B.1
Crowther, R.A.2
-
58
-
-
33747343667
-
Systematic review: are antibiotics detrimental or beneficial for the treatment of patients with Escherichia coli O157:H7 infection? Aliment
-
Panos, G. Z., G. I. Betsi, and M. E. Falagas. 2006. Systematic review: are antibiotics detrimental or beneficial for the treatment of patients with Escherichia coli O157:H7 infection? Aliment. Pharmacol. Ther. 24:731-742.
-
(2006)
Pharmacol. Ther.
, vol.24
, pp. 731-742
-
-
Panos, G.Z.1
Betsi, G.I.2
Falagas, M.E.3
-
59
-
-
8344284323
-
A common open representation of mass spectrometry data and its application to proteomics research
-
Pedrioli, P. G., et al. 2004. A common open representation of mass spectrometry data and its application to proteomics research. Nat. Biotechnol. 22:1459-1466.
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1459-1466
-
-
Pedrioli, P.G.1
-
60
-
-
0037453742
-
Origins of highly mosaic mycobacteriophage genomes
-
Pedulla, M. L., et al. 2003. Origins of highly mosaic mycobacteriophage genomes. Cell 113:171-182.
-
(2003)
Cell
, vol.113
, pp. 171-182
-
-
Pedulla, M.L.1
-
61
-
-
60349118910
-
Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen
-
Perry, L. L., et al. 2009. Sequence analysis of Escherichia coli O157:H7 bacteriophage PhiV10 and identification of a phage-encoded immunity protein that modifies the O157 antigen. FEMS Microbiol. Lett. 292:182-186.
-
(2009)
FEMS Microbiol. Lett.
, vol.292
, pp. 182-186
-
-
Perry, L.L.1
-
62
-
-
33745905622
-
Plasticity of the gene functions for DNA replication in the T4-like phages
-
Petrov, V. M., et al. 2006. Plasticity of the gene functions for DNA replication in the T4-like phages. J. Mol. Biol. 361:46-68.
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 46-68
-
-
Petrov, V.M.1
-
63
-
-
77958592580
-
Genomes of the T4-related bacteriophages as windows on microbial genome evolution
-
Petrov, V. M., S. Ratnayaka, J. M. Nolan, E. S. Miller, and J. D. Karam. 2010. Genomes of the T4-related bacteriophages as windows on microbial genome evolution. Virol. J. 7:292.
-
(2010)
Virol. J.
, vol.7
, pp. 292
-
-
Petrov, V.M.1
Ratnayaka, S.2
Nolan, J.M.3
Miller, E.S.4
Karam, J.D.5
-
64
-
-
0033056680
-
Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product
-
Plunkett, G., III, D. J. Rose, T. J. Durfee, and F. R. Blattner. 1999. Sequence of Shiga toxin 2 phage 933W from Escherichia coli O157:H7: Shiga toxin as a phage late-gene product. J. Bacteriol. 181:1767-1778.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 1767-1778
-
-
Plunkett III, G.1
Rose, D.J.2
Durfee, T.J.3
Blattner, F.R.4
-
65
-
-
16244395474
-
Epidemiology of Escherichia coli O157:H7 outbreaks, United States 1982-2002
-
Rangel, J. M., P. H. Sparling, C. Crowe, P. M. Griffin, and D. L. Swerdlow. 2005. Epidemiology of Escherichia coli O157:H7 outbreaks, United States, 1982-2002. Emerg. Infect. Dis. 11:603-609.
-
(2005)
Emerg. Infect. Dis.
, vol.11
, pp. 603-609
-
-
Rangel, J.M.1
Sparling, P.H.2
Crowe, C.3
Griffin, P.M.4
Swerdlow, D.L.5
-
66
-
-
33748788784
-
Isolation and characterization of a new T-even bacteriophage, CEV1, and determination of its potential to reduce Escherichia coli O157:H7 levels in sheep
-
Raya, R. R., et al. 2006. Isolation and characterization of a new T-even bacteriophage, CEV1, and determination of its potential to reduce Escherichia coli O157:H7 levels in sheep. Appl. Environ. Microbiol. 72:6405-6410.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 6405-6410
-
-
Raya, R.R.1
-
67
-
-
0027965517
-
Genomic polymorphism in the T-even bacteriophages
-
Repoila, F., F. Tetart, J. Y. Bouet, and H. M. Krisch. 1994. Genomic polymorphism in the T-even bacteriophages. EMBO J. 13:4181-4192.
-
(1994)
EMBO J
, vol.13
, pp. 4181-4192
-
-
Repoila, F.1
Tetart, F.2
Bouet, J.Y.3
Krisch, H.M.4
-
68
-
-
0034201441
-
EMBOSS: the European molecular biology open software suite
-
Rice, P., I. Longden, and A. Bleasby. 2000. EMBOSS: the European molecular biology open software suite. Trends Genet. 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
69
-
-
0016817176
-
ADP-ribosylation of DNAdependent RNA polymerase of Escherichia coli by an NAD(:protein ADPribosyltransferase from bacteriophage T4
-
Rohrer, H., W. Zillig, and R. Mailhammer. 1975. ADP-ribosylation of DNAdependent RNA polymerase of Escherichia coli by an NAD(:protein ADPribosyltransferase from bacteriophage T4. Eur. J. Biochem. 60:227-238.
-
(1975)
Eur. J. Biochem.
, vol.60
, pp. 227-238
-
-
Rohrer, H.1
Zillig, W.2
Mailhammer, R.3
-
70
-
-
84964336771
-
Isolation and characterization of a coliphage specific for Escherichia coli O157:H7
-
Ronner, A. B., and D. O. Cliver. 1990. Isolation and characterization of a coliphage specific for Escherichia coli O157:H7. J. Food Prot. 53:944-947.
-
(1990)
J. Food Prot.
, vol.53
, pp. 944-947
-
-
Ronner, A.B.1
Cliver, D.O.2
-
71
-
-
0037464552
-
Distinctiveness of the genomic sequence of Shiga toxin 2-converting phage isolated from Escherichia coli O157:H7 Okayama strain as compared to other Shiga toxin 2-converting phages
-
Sato, T., et al. 2003. Distinctiveness of the genomic sequence of Shiga toxin 2-converting phage isolated from Escherichia coli O157:H7 Okayama strain as compared to other Shiga toxin 2-converting phages. Gene 309:35-48.
-
(2003)
Gene
, vol.309
, pp. 35-48
-
-
Sato, T.1
-
72
-
-
0037701438
-
Genome analysis of a novel Shiga toxin 1 (Stx1)-converting phage which is closely related to Stx2-converting phages but not to other Stx1-converting phages
-
Sato, T., et al. 2003. Genome analysis of a novel Shiga toxin 1 (Stx1)-converting phage which is closely related to Stx2-converting phages but not to other Stx1-converting phages. J. Bacteriol. 185:3966-3971.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3966-3971
-
-
Sato, T.1
-
73
-
-
28844498371
-
The genome of bacteriophage K1F, a T7-like phage that has acquired the ability to replicate on K1 strains of Escherichia coli
-
Scholl, D., and C. Merril. 2005. The genome of bacteriophage K1F, a T7-like phage that has acquired the ability to replicate on K1 strains of Escherichia coli. J. Bacteriol. 187:8499-8503.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 8499-8503
-
-
Scholl, D.1
Merril, C.2
-
74
-
-
0037608958
-
Escherichia coli O157:H7 Shiga toxinencoding bacteriophages: integrations, excisions, truncations, and evolutionary implications
-
Shaikh, N., and P. I. Tarr. 2003. Escherichia coli O157:H7 Shiga toxinencoding bacteriophages: integrations, excisions, truncations, and evolutionary implications. J. Bacteriol. 185:3596-3605.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 3596-3605
-
-
Shaikh, N.1
Tarr, P.I.2
-
75
-
-
0028151655
-
Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns
-
Shub, D. A., H. Goodrich-Blair, and S. R. Eddy. 1994. Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns. Trends Biochem. Sci. 19:402-404.
-
(1994)
Trends Biochem. Sci.
, vol.19
, pp. 402-404
-
-
Shub, D.A.1
Goodrich-Blair, H.2
Eddy, S.R.3
-
76
-
-
0029654258
-
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis
-
Sonnhammer, E. L., and R. Durbin. 1995. A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis. Gene 167:GC1-GC10.
-
(1995)
Gene
, vol.167
-
-
Sonnhammer, E.L.1
Durbin, R.2
-
77
-
-
77949288995
-
Lysogenic infection of a Shiga toxin 2-converting bacteriophage changes host gene expression, enhances host acid resistance and motility
-
Su, L. K., et al. 2010. Lysogenic infection of a Shiga toxin 2-converting bacteriophage changes host gene expression, enhances host acid resistance and motility. Mol. Biol. (Moscow) 44:60-73.
-
(2010)
Mol. Biol. (Moscow)
, vol.44
, pp. 60-73
-
-
Su, L.K.1
-
78
-
-
21344461027
-
Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations
-
Sullivan, M. B., M. L. Coleman, P. Weigele, F. Rohwer, and S. W. Chisholm. 2005. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3:e144.
-
(2005)
PLoS Biol
, vol.3
-
-
Sullivan, M.B.1
Coleman, M.L.2
Weigele, P.3
Rohwer, F.4
Chisholm, S.W.5
-
79
-
-
78249280297
-
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
-
Sullivan, M. B., et al. 2010. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ. Microbiol. 12:3035-3056.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 3035-3056
-
-
Sullivan, M.B.1
-
80
-
-
0032566488
-
Genome plasticity in the distal tail fiber locus of the T-even bacteriophage: recombination between conserved motifs swaps adhesin specificity
-
Tetart, F., C. Desplats, and H. M. Krisch. 1998. Genome plasticity in the distal tail fiber locus of the T-even bacteriophage: recombination between conserved motifs swaps adhesin specificity. J. Mol. Biol. 282:543-556.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 543-556
-
-
Tetart, F.1
Desplats, C.2
Krisch, H.M.3
-
81
-
-
0035180718
-
Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages
-
Tetart, F., et al. 2001. Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages. J. Bacteriol. 183:358-366.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 358-366
-
-
Tetart, F.1
-
82
-
-
22544464152
-
The biology of restriction and antirestriction
-
Tock, M. R., and D. T. Dryden. 2005. The biology of restriction and antirestriction. Curr. Opin. Microbiol. 8:466-472.
-
(2005)
Curr. Opin. Microbiol.
, vol.8
, pp. 466-472
-
-
Tock, M.R.1
Dryden, D.T.2
-
83
-
-
0030047972
-
A genetic approach for analysing surfaceexposed regions of the OmpC protein of Escherichia coli K-12
-
Vakharia, H., and R. Misra. 1996. A genetic approach for analysing surfaceexposed regions of the OmpC protein of Escherichia coli K-12. Mol. Microbiol. 19:881-889.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 881-889
-
-
Vakharia, H.1
Misra, R.2
-
84
-
-
0029879482
-
Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t
-
Van Sinderen, D., et al. 1996. Sequence analysis and molecular characterization of the temperate lactococcal bacteriophage r1t. Mol. Microbiol. 19: 1343-1355.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 1343-1355
-
-
Van Sinderen, D.1
-
85
-
-
65449143235
-
The genome and proteome of a virulent Escherichia coli O157:H7 bacteriophage closely resembling Salmonella phage Felix O1
-
Villegas, A., et al. 2009. The genome and proteome of a virulent Escherichia coli O157:H7 bacteriophage closely resembling Salmonella phage Felix O1. Virol. J. 6:41.
-
(2009)
Virol. J.
, vol.6
, pp. 41
-
-
Villegas, A.1
-
86
-
-
0015924702
-
Function of the bacteriophage T4 transfer RNA's
-
Wilson, J. H. 1973. Function of the bacteriophage T4 transfer RNA's. J. Mol. Biol. 74:753-757.
-
(1973)
J. Mol. Biol.
, vol.74
, pp. 753-757
-
-
Wilson, J.H.1
-
87
-
-
0029644596
-
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates, J. R., III, J. K. Eng, A. L. McCormack, and D. Schieltz. 1995. Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal. Chem. 67:1426-1436.
-
(1995)
Anal. Chem.
, vol.67
, pp. 1426-1436
-
-
Yates III, J.R.1
Eng, J.K.2
McCormack, A.L.3
Schieltz, D.4
-
88
-
-
0034162940
-
Phages will out: strategies of host cell lysis
-
Young, I., I. Wang, and W. D. Roof. 2000. Phages will out: strategies of host cell lysis. Trends Microbiol. 8:120-128.
-
(2000)
Trends Microbiol
, vol.8
, pp. 120-128
-
-
Young, I.1
Wang, I.2
Roof, W.D.3
-
89
-
-
0031697119
-
Characterization of a phage specific to hemorrhagic Escherichia coli O157:H7 and disclosure of variations in host outer membrane protein OmpC
-
Yu, S. L., et al. 1998. Characterization of a phage specific to hemorrhagic Escherichia coli O157:H7 and disclosure of variations in host outer membrane protein OmpC. J. Biomed. Sci. 5:370-382.
-
(1998)
J. Biomed. Sci.
, vol.5
, pp. 370-382
-
-
Yu, S.L.1
-
90
-
-
0033759352
-
Characterization of the distal tail fiber locus and determination of the receptor for phage AR1, which specifically infects Escherichia coli O157:H7
-
Yu, S. L., K. L. Ko, C. S. Chen, Y. C. Chang, and W. J. Syu. 2000. Characterization of the distal tail fiber locus and determination of the receptor for phage AR1, which specifically infects Escherichia coli O157:H7. J. Bacteriol. 182:5962-5968.
-
(2000)
J. Bacteriol.
, vol.182
, pp. 5962-5968
-
-
Yu, S.L.1
Ko, K.L.2
Chen, C.S.3
Chang, Y.C.4
Syu, W.J.5
-
91
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov, E. M., and R. Apweiler. 2001. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
92
-
-
36549031282
-
Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli
-
Zuber, S., et al. 2007. Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli. J. Bacteriol. 189:8206-8214.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8206-8214
-
-
Zuber, S.1
|