Genome shuffling: A method to improve biotechnological processes

Biotechnologia

Volumn 92, Issue 4, 2011, Pages 345-351

  Leja, Katarzyna ^a   Myszka, Kamila ^a   Czaczyk, Katarzyna ^a  

^a POZNA UNIVERSITY OF LIFE SCIENCES   (Poland)

Author keywords

Bacteria strains; Genome shuffling; Mutagenesis; Protoplast fusion; Strain improvement technology

Indexed keywords

BACTERIA (MICROORGANISMS); STREPTOMYCES FRADIAE;

EID: 84859553544     PISSN: 08607796     EISSN: None     Source Type: Journal    
DOI: 10.5114/bta.2011.46551     Document Type: Review

References (43)

1. Ahmed F.E. (2003) Genetically modiWed probiotics in foods. Trends Biotechnol. 21: 491-497.
2. Bode H.B., Muller R. (2006) Analysis of myxobacterial secondary metabolism goes molecular. J. Ind. Microbiol. Biotechnol. 33: 577-588.
3. Chen T., Wang J.Y., Zhou S.Q., Chen X., Ban R., Zhao X.M. (2004) Trait improvement of riboflavin producing Bacillus subtilis by genome shuffling and metabolic flux analysis. J. Chem. Ind. Eng. 55: 1842-1848.
4. Cheng Y., Song X., Qin Y., Qu Y. (2009) Genome shuffling improves production of cellulose by Penicillium decumbens JU-A10. J. Appl. Microbiol. 107: 1837-1846.
5. Dai M.H., Copley S.D. (2004) Improved production of ethanol by novel genome shuffling in Saccharomyces cerevisiae. Appl. Environm. Microbiol. 70: 2391-2397.
6. del Cardayré S.B., Powell K. (2003) DNA shuffling for whole cell engineering. In: Handbook of Industrial Cell Culture Mammalian, Microbial, and Plant Cells, ed. Vinci V.A., Parekh S.R., Humana Press, New Jersey, p. 476-480.
7. del Cardayré S.B. (2005) Developments in strain improvement technology evolutionary engineering of industrial microorganisms through gene, pathway, and genome shuffling. In: Natural Products Drug Discovery and Therapeutic Medicine, ed. Zhang L., Demain A.L., Humana Press, New York, p. 117-119.
8. Drozdzyńska A., Leja K., Czaczyk K. (2011) Biotechnological production of 1,3-propanediol from crude glycerol. BioTechnologia 92(1): 92-100.
9. Gong G.L., Sun X., Liu X.L., Hu W., Cao W.R., Liu H., Liu W.F., Li Y.Z. (2007) Mutation and a high-throughput screening method for improving the production of Epothilones of Sorangium. J. Ind. Microbiol. Biotechnol. 34: 615-623.
10. Gong J., Zheng H., Wu Z., Chen T., Zhao X. (2009) Genome shuffling: Progress and applications for phenotype improvement. Biot. Adv. 27: 996-1005.
11. Graves T., Narendranath N.V., Dawson K., Power R. (2007) Interaction effects of lactic acid and acetic acid at different temperatures on ethanol production by Saccharomyces cerevisiae in corn mash. Appl. Microbiol. Biotechnol. 73: 1190-1196.
12. Hida H., Yamada T., Yamada Y. (2007) Genome shufXing of Streptomyces sp. U121 for improved production of hydroxycitric acid. Appl. Microbiol. Biotechnol. 73: 1387-1393.
13. Hopwood D.A., Wright H.M., Bibb M.J., Cohen S.N. (1977) Genetic recombination through protoplast fusion in Streptomyces. Nature 268: 171-174.
14. Hopwood D.A., Wright H.M. (1979) Factors affecting recombinant frequency in protoplast fusions of Streptomyces coelicolor. J. Gen. Microbiol. 111: 137-143
15. Iwata M., Mada M., Ishiwa H. (1986) Protoplast fusion of Lactobacillus fermentum. Appl. Environ. Microbiol. 52: 392-393.
16. Jin Z.H., Xu B., Lin S.Z., Jin Q.C., Cen P.L. (2009) Enhanced production of spinosad in Saccharomyces spinosa by genome shuffling. Appl. Biochem. Biotechnol. 159: 655-663.
17. John R.P., Gangadharan D., Nampoothiri K.M. (2008) Genome shuffling of Lactobacillus delbueckii mutant and Baccillus amyloliquefaciens through protoplasmic fusion for L-lactic production from starchy wastes. Biores. Technol. 99: 8008-8015.
18. Kawahata M., Masaki K., Fujii T., Iefuji H. (2006) Yeast genes involved in response to lactic acid and acetic acid: acidic conditions caused by the organic acids in Saccharomyces cerevisiae cultures induce expression of intracellular metal metabolism genes regulated by Aft1p. FEMS Yeast Res. 6: 924-936.
19. Kumar M. (2007) Improving polycyclic aromatic hydrocarbons degradation by genome shuffling. Asian J. Microbiol. Biotechnol. Environ. Sci. 9: 145-149.
20. Leja K., Czaczyk K., Myszka K. (2011) 1,3-Propanediol synthesis by biotechnological way using Clostridium ssp. African J. Biotech. (in press).
21. Liang H.Y., Guo Y. (2007) Whole genome shuffling to enhance activity of fibrinolytic enzyme producing strains. China Biotechnol. 27: 39-43.
22. Lin J., Shi B.H., Shi Q.Q., He Y.X., Wang M.Z. (2007) Rapid improvement in lipase production of Penicillium expansum by genome shuffling. Chin. J. Biotechnol. 23(4): 672-676.
23. Lutz S., Bornscheuer U.T. (2009) Biosynthetic Pathway Engineering Strategies. In: Protein Engineering Handbook, Willey-VCH Verlag GmbH&Co, Weinheim, p. 862-864.
24. Otte B., Grunwaldt E., Mahmoud O., Jennewein S. (2009) Genome shuffling in Clostridium diolis DSM 15410 for improved 1,3-propanediol production. Appl. Environm. Microbiol. 75: 7610-7616.
25. Patnaik R., Louie S., Gavrilovic V., Perry K., Stemmer W.P., Ryan C.M. et al. (2002) Genome shuffling of lactobacillus for improved acid tolerance. Nat. Biotechnol. 20: 707-712.
26. Petri R., Schmidt-Dannert C. (2004) Dealing with complexity: evolutionary engineering and genome shuffling. Curr. Opin. Biotechnol. 15: 298-304.
27. Rai N., Rai M. (2006) Reproduction, Pollen Biology, and Pollen Biotechnology. In: Heterosis breeding in vegetable crops, ed. Kalloo G., New India Publishing Agency, p. 184-185.
28. Rassoulzadegan M., Binetruy B., Cuzin F. (1982) High frequency of gene transfer after fusion between bacteria and eukaryotic cells. Nature 295: 257-259.
29. Rojan P., John G.S., Pandey A.A., Nampoothiri K.M. (2010) Genome shuffling: A new trend in improved bacterial production of lactic acid. Ind. Biotechnol. 6: 164-169.
30. Scheinbach S. (1983) Protoplast fusion as a means of producing new industrial yeast strains. Biotechnol. Adv. 1: 289-300.
31. Shi D.J., Wang C.L., Wang K.M. (2009) Genome shuffling to improve thermotolerance, ethanol tolerance and ethanol productivity of Saccharomyces cerevisiae. J. Ind. Microbiol. Biotechnol. 36: 139-147.
32. Stephanopoulos G. (2002) Metabolic engineering by genome shuffling. Nat Biotechnol. 20: 666-668.
33. Verma V., Qazi G.N., Parshad R. (1992) Intergeneric protoplast fusion between Gluconobacter oxydans and Corynebacterium species. J. Biotechnol. 26: 327-330.
34. Wang Y., Li Y., Pei X., Yu L., Feng Y. (2007) Genome-shuffling improved acid tolerance and L-lactic acid volumetric productivity in Lactobacillus rhamnosus. J. Biotechnol. 129: 510-515.
35. Wei P.Y., Li Z.L., He P., Lin Y., Jiang N. (2008) Genome shuffling in the ethanologenic yeast Candida krusei to improve acetic acid tolerance. Biotechnol. Appl. Biochem. 49: 113-120.
36. Xu B., Jin Z.H., Wang H.Z., Jin Q.C., Jin X., Cen P.L. (2008) Evolution of Streptomyces pristinaespiralis for resistance and production of pristinamycin by genome shuffling. Appl. Microbiol. Biotechnol. 80: 261-267.
37. Xu B., Wang M.R., Xia Y., Yang K., Zhang C.Y. (2006) Improvement of the output of teicoplanin by genome shuffling. Chin. J. Antibiot. 31: 237-242.
38. Xu F., Jin H., Li H., Tao L., Wang J., Lv J., Chen S. (2011) Genome shuffling of Trichoderma viride for enhanced cellulase production. Ann. Microbiol. 5: 176-191.
39. Yu L., Lei T., Pei X.L., Liu J.S. (2007) Application of genome shuffling in enhancing L-lactic acid production by improving glucose tolerance of Lactobacillus rhamnosus. Food Sci. 28: 369-373.
40. Yu L., Pei X.L., Lei T., Wang Y., Feng Y. (2008) Genome shuffling enhanced L-lactic acid production by improving glucose tolerance of Lactobacillus rhamnosus. J. Biotechnol. 134: 154-159.
41. Zhang Y., Liu J.Z., Huang J.S., Mao Z.W. (2010) Genome shuffling of Propionibacterium shermanii for improving vitamin B12 production and comparative proteome analysis. J. Biotechnol. 148: 139-143.
42. Zhang Y.X., Perry K., Vinci V.A., Powell K., Stemmer W.P., del Cardayré S.B. (2002) Genome shufXing leads to rapid phenotypic improvement in bacteria. Nature 415: 644-646.
43. Zirkle R., Ligon J.M., Molnar I. (2004) Heterologous production of the antifungal polyketide antibiotic soraphen A of Sorangium cellulosum So ce26 in Streptomyces lividans. Microbiology-Sgm. 150: 2761-2774.