Nonfluorescent quenchers to correlate single-molecule conformational and compositional dynamics

Journal of the American Chemical Society

Volumn 134, Issue 13, 2012, Pages 5734-5737

  Chen, Jin ^a,b   Tsai, Albert ^a,b   Petrov, Alexey ^b   Puglisi, Joseph D ^b  

^a STANFORD UNIVERSITY   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BLACK HOLES; CONFORMATIONAL CHANGE; CONFORMATIONAL DYNAMICS; CORRELATION STUDIES; FLUORESCENT DYES; NON-FLUORESCENT QUENCHER; REAL TIME; RESONANCE ENERGY TRANSFER; SINGLE-MOLECULE; SPECTRAL OVERLAP;

BIOMOLECULES; DYNAMICS; ENERGY TRANSFER; MACROMOLECULES; QUANTUM YIELD;

CONFORMATIONS;

FLUORESCENT DYE; TRANSFER RNA;

ARTICLE; CONFORMATIONAL TRANSITION; FLUORESCENCE RESONANCE ENERGY TRANSFER; NONPHOTOCHEMICAL QUENCHING; QUANTUM YIELD; RIBOSOME;

BASE SEQUENCE; CARBOCYANINES; ESCHERICHIA COLI; FLUORESCENCE RESONANCE ENERGY TRANSFER; MOLECULAR CONFORMATION; RIBOSOME SUBUNITS, LARGE, BACTERIAL; RNA, TRANSFER;

EID: 84859334880     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja2119964     Document Type: Article

References (23)

1. Joo, C.; Balci, H.; Ishitsuka, Y.; Buranachai, C.; Ha, T. Annu. Rev. Biochem. 2008, 77, 51
2. Weiss, S. Science 1999, 283, 1676
3. Weiss, S. Nat. Struct. Biol. 2000, 7, 724
4. Tinoco, I., Jr.; Gonzalez, R. L., Jr. Genes Dev. 2011, 25, 1205
5. Aitken, C. E.; Puglisi, J. D. Nat. Struct. Mol. Biol. 2010, 17, 793
6. Blanchard, S. C.; Gonzalez, R. L.; Kim, H. D.; Chu, S.; Puglisi, J. D. Nat. Struct. Mol. Biol. 2004, 11, 1008
7. Blanchard, S. C.; Kim, H. D.; Gonzalez, R. L., Jr.; Puglisi, J. D.; Chu, S. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 12893
8. Cornish, P. V.; Ermolenko, D. N.; Noller, H. F.; Ha, T. Mol. Cell 2008, 30, 578
9. Fei, J.; Bronson, J. E.; Hofman, J. M.; Srinivas, R. L.; Wiggins, C. H.; Gonzalez, R. L., Jr. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 15702
10. Fei, J.; Kosuri, P.; MacDougall, D. D.; Gonzalez, R. L., Jr. Mol. Cell 2008, 30, 348
11. Marshall, R. A.; Dorywalska, M.; Puglisi, J. D. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 15364
12. Uemura, S.; Aitken, C. E.; Korlach, J.; Flusberg, B. A.; Turner, S. W.; Puglisi, J. D. Nature 2010, 464, 1012
13. Wen, J. D.; Lancaster, L.; Hodges, C.; Zeri, A. C.; Yoshimura, S. H.; Noller, H. F.; Bustamante, C.; Tinoco, I. Nature 2008, 452, 598
14. Roy, R.; Hohng, S.; Ha, T. Nat. Methods 2008, 5, 507
15. Lakowicz, J. R. Principles of Fluorescence Spectroscopy, 3 rd ed.; Springer: New York, 2006.
16. Marras, S. A.; Kramer, F. R.; Tyagi, S. Nucleic Acids Res. 2002, 30, e122
17. Schwartz, J. J.; Quake, S. R. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 20294
18. Takada, T.; Takeda, Y.; Fujitsuka, M.; Majima, T. J. Am. Chem. Soc. 2009, 131, 6656
19. Orte, A.; Clarke, R. W.; Klenerman, D. Anal. Chem. 2008, 80, 8389
20. Youn, H. J.; Terpetschnig, E.; Szmacinski, H.; Lakowicz, J. R. Anal. Biochem. 1995, 232, 24
21. Tahmassebi, D. C.; Millar, D. P. Biochem. Biophys. Res. Commun. 2009, 380, 277
22. Ganesan, S.; Ameer-Beg, S. M.; Ng, T. T.; Vojnovic, B.; Wouters, F. S. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 4089
23. Dorywalska, M.; Blanchard, S. C.; Gonzalez, R. L.; Kim, H. D.; Chu, S.; Puglisi, J. D. Nucleic Acids Res. 2005, 33, 182