-
1
-
-
77950516144
-
Conformational dynamics of single pre-mRNA molecules during in vitro splicing
-
Abelson J, Blanco M, Ditzler MA, Fuller F, Aravamudhan P, Wood M, Villa T, Ryan DE, Pleiss JA, Maeder C, et al 2010. Conformational dynamics of single pre-mRNA molecules during in vitro splicing. Nat Struct Mol Biol 17: 504-512.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 504-512
-
-
Abelson, J.1
Blanco, M.2
Ditzler, M.A.3
Fuller, F.4
Aravamudhan, P.5
Wood, M.6
Villa, T.7
Ryan, D.E.8
Pleiss, J.A.9
Maeder, C.10
-
2
-
-
77954383845
-
Following the inter subunit conformation of the ribosome during translation in real time
-
Aitken CE, Puglisi JD. 2010. Following the inter subunit conformation of the ribosome during translation in real time. Nat Struct Mol Biol 17: 793-800.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 793-800
-
-
Aitken, C.E.1
Puglisi, J.D.2
-
3
-
-
41449108157
-
An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments
-
Aitken CE, Marshall RA, Puglisi JD. 2008. An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. Biophys J 94: 1826-1835.
-
(2008)
Biophys J
, vol.94
, pp. 1826-1835
-
-
Aitken, C.E.1
Marshall, R.A.2
Puglisi, J.D.3
-
4
-
-
77952693978
-
Single ribosome dynamics and the mechanism of translation
-
Aitken CE, Petrov A, Puglisi JD. 2010. Single ribosome dynamics and the mechanism of translation. Annu Rev Biophys 39: 491-513.
-
(2010)
Annu Rev Biophys
, vol.39
, pp. 491-513
-
-
Aitken, C.E.1
Petrov, A.2
Puglisi, J.D.3
-
5
-
-
4243504131
-
Acceleration and trapping of particles by radiation pressure
-
Ashkin A. 1970. Acceleration and trapping of particles by radiation pressure. Phys Rev Lett 24: 156-159.
-
(1970)
Phys Rev Lett
, vol.24
, pp. 156-159
-
-
Ashkin, A.1
-
6
-
-
0030924943
-
Optical trapping and manipulation of neutral particles using lasers
-
Ashkin A. 1997. Optical trapping and manipulation of neutral particles using lasers. Proc Natl Acad Sci 94: 4853-4860.
-
(1997)
Proc Natl Acad Sci
, vol.94
, pp. 4853-4860
-
-
Ashkin, A.1
-
7
-
-
0025036111
-
Ribosome gymnastics-degree of difficulty 9.5, style 10.0
-
Atkins JF, Weiss RB, Gesteland RF. 1990. Ribosome gymnastics-degree of difficulty 9.5, style 10.0. Cell 62: 413-423.
-
(1990)
Cell
, vol.62
, pp. 413-423
-
-
Atkins, J.F.1
Weiss, R.B.2
Gesteland, R.F.3
-
8
-
-
0019494948
-
Cell-substrate contacts illuminated by total internal-reflection fluorescence
-
Axelrod D. 1981. Cell-substrate contacts illuminated by total internal-reflection fluorescence. J Cell Biol 89: 141-145.
-
(1981)
J Cell Biol
, vol.89
, pp. 141-145
-
-
Axelrod, D.1
-
9
-
-
0034760118
-
Total internal reflection fluorescence microscopy in cell biology
-
Axelrod D. 2001. Total internal reflection fluorescence microscopy in cell biology. Traffic 2: 764-774.
-
(2001)
Traffic
, vol.2
, pp. 764-774
-
-
Axelrod, D.1
-
10
-
-
0037284103
-
Total internal reflection fluorescence microscopy in cell biology
-
ed. G Marriott and I Parker, Academic Press Inc., San Diego, CA
-
Axelrod D. 2003. Total internal reflection fluorescence microscopy in cell biology. In Biophotonics, Pt B, (ed. G Marriott and I Parker). pp. 1-33. Academic Press Inc., San Diego, CA.
-
(2003)
Biophotonics, Pt B
, pp. 1-33
-
-
Axelrod, D.1
-
12
-
-
0029764358
-
Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: Fluorescent-labeled protein kinase C β I
-
Bastiaens PI, Jovin TM. 1996. Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: fluorescent-labeled protein kinase C β I. Proc Natl Acad Sci 93: 8407-8412.
-
(1996)
Proc Natl Acad Sci
, vol.93
, pp. 8407-8412
-
-
Bastiaens, P.I.1
Jovin, T.M.2
-
13
-
-
0000771006
-
Enzymatic removal of oxygen for polarography and related methods
-
Benesch RE, Benesch R. 1953. Enzymatic removal of oxygen for polarography and related methods. Science 118: 447-448.
-
(1953)
Science
, vol.118
, pp. 447-448
-
-
Benesch, R.E.1
Benesch, R.2
-
15
-
-
0021112855
-
Spontaneous, elongation factor G independent translocation of escherichia coli ribosomes
-
Bergemann K, Nierhaus KH. 1983. Spontaneous, elongation factor G independent translocation of Escherichia coli ribosomes. J Biol Chem 258: 15105-15113.
-
(1983)
J Biol Chem
, vol.258
, pp. 15105-15113
-
-
Bergemann, K.1
Nierhaus, K.H.2
-
16
-
-
0027768732
-
Single molecules observed by near-field scanning optical microscopy
-
Betzig E, Chichester RJ. 1993. Single molecules observed by near-field scanning optical microscopy. Science 262: 1422-1425.
-
(1993)
Science
, vol.262
, pp. 1422-1425
-
-
Betzig, E.1
Chichester, R.J.2
-
17
-
-
79955121973
-
Enhancement of single-molecule fluorescence signals by colloidal silver nanoparticles in studies of protein translation
-
Bharill S, Chen C, Stevens B, Kaur J, Smilansky Z, Mandecki W, Gryczynski I, Gryczynski Z, Cooperman BS, Goldman YE. 2011. Enhancement of single-molecule fluorescence signals by colloidal silver nanoparticles in studies of protein translation. ACS Nano 5: 399-407.
-
(2011)
ACS Nano
, vol.5
, pp. 399-407
-
-
Bharill, S.1
Chen, C.2
Stevens, B.3
Kaur, J.4
Smilansky, Z.5
Mandecki, W.6
Gryczynski, I.7
Gryczynski, Z.8
Cooperman, B.S.9
Goldman, Y.E.10
-
18
-
-
0000318119
-
Single molecule emission characteristics in near-field microscopy
-
Bian RX, Dunn RC, Xie XS. 1995. Single molecule emission characteristics in near-field microscopy. Phys Rev Lett 75: 4772-4775.
-
(1995)
Phys Rev Lett
, vol.75
, pp. 4772-4775
-
-
Bian, R.X.1
Dunn, R.C.2
Xie, X.S.3
-
20
-
-
60349097663
-
Single-molecule observations of ribosome function
-
Blanchard SC. 2009. Single-molecule observations of ribosome function. Curr Opin Struct Biol 19: 103-109.
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 103-109
-
-
Blanchard, S.C.1
-
21
-
-
4744365694
-
TRNA selection and kinetic proofreading in translation
-
Blanchard SC, Gonzalez RL, Kim HD, Chu S, Puglisi JD. 2004a. tRNA selection and kinetic proofreading in translation. Nat Struct Mol Biol 11: 1008-1014.
-
(2004)
Nat Struct Mol Biol
, vol.11
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez, R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
22
-
-
4444313551
-
TRNA dynamics on the ribosome during translation
-
Blanchard SC, Kim HD, Gonzalez RL Jr, Puglisi JD, Chu S. 2004b. tRNA dynamics on the ribosome during translation. Proc Natl Acad Sci 101: 12893-12898.
-
(2004)
Proc Natl Acad Sci
, vol.101
, pp. 12893-12898
-
-
Blanchard, S.C.1
Kim, H.D.2
Gonzalez Jr., R.L.3
Puglisi, J.D.4
Chu, S.5
-
23
-
-
0035819204
-
Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy
-
Boukobza E, Sonnenfeld A, Haran G. 2001. Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy. J Phys Chem B 105: 12165-12170.
-
(2001)
J Phys Chem B
, vol.105
, pp. 12165-12170
-
-
Boukobza, E.1
Sonnenfeld, A.2
Haran, G.3
-
24
-
-
79952213179
-
Forcing a connection: Impacts of single-molecule force spectroscopy on in vivo tension sensing
-
doi: 10.1002/bip.21587
-
Brenner MD, Zhou R, Ha T. 2011. Forcing a connection: impacts of single-molecule force spectroscopy on in vivo tension sensing. Biopolymers 2011: 21587. doi: 10.1002/bip.21587.
-
(2011)
Biopolymers
, vol.2011
, pp. 21587
-
-
Brenner, M.D.1
Zhou, R.2
Ha, T.3
-
25
-
-
34147138772
-
Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy
-
Brujic J, Hermans RI, Garcia-Manyes S, Walther KA, Fernandez JM. 2007. Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy. Biophys J 92: 2896-2903.
-
(2007)
Biophys J
, vol.92
, pp. 2896-2903
-
-
Brujic, J.1
Hermans, R.I.2
Garcia-Manyes, S.3
Walther, K.A.4
Fernandez, J.M.5
-
26
-
-
58849110330
-
A general and efficient method for the site-specific dual-labeling of proteins for single molecule fluorescence resonance energy transfer
-
Brustad EM, Lemke EA, Schultz PG, Deniz AA. 2008. A general and efficient method for the site-specific dual-labeling of proteins for single molecule fluorescence resonance energy transfer. J Am Chem Soc 130: 17664-17665.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 17664-17665
-
-
Brustad, E.M.1
Lemke, E.A.2
Schultz, P.G.3
Deniz, A.A.4
-
27
-
-
0041305824
-
Structural transitions and elasticity from torque measurements on DNA
-
Bryant Z, Stone MD, Gore J, Smith SB, Cozzarelli NR, Bustamante C. 2003. Structural transitions and elasticity from torque measurements on DNA. Nature 424: 338-341.
-
(2003)
Nature
, vol.424
, pp. 338-341
-
-
Bryant, Z.1
Stone, M.D.2
Gore, J.3
Smith, S.B.4
Cozzarelli, N.R.5
Bustamante, C.6
-
28
-
-
50649105347
-
In singulo biochemistry: When less is more
-
Bustamante C. 2008. In singulo biochemistry: when less is more. Annu Rev Biochem 77: 45-50.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 45-50
-
-
Bustamante, C.1
-
30
-
-
33645027986
-
Stochastic protein expression in individual cells at the single molecule level
-
Cai L, Friedman N, Xie XS. 2006. Stochastic protein expression in individual cells at the single molecule level. Nature 440: 358-362.
-
(2006)
Nature
, vol.440
, pp. 358-362
-
-
Cai, L.1
Friedman, N.2
Xie, X.S.3
-
31
-
-
63049121363
-
X-ray imaging beyond the limits
-
Chapman HN. 2009. X-ray imaging beyond the limits. Nat Mater 8: 299-301.
-
(2009)
Nat Mater
, vol.8
, pp. 299-301
-
-
Chapman, H.N.1
-
32
-
-
78649917178
-
Ground-state depletion microscopy: Detection sensitivity of single-molecule optical absorption at room temperature
-
Chong S, Min W, Xie XS. 2010. Ground-state depletion microscopy: detection sensitivity of single-molecule optical absorption at room temperature. Phys Chem Lett 1: 3316-3322.
-
(2010)
Phys Chem Lett
, vol.1
, pp. 3316-3322
-
-
Chong, S.1
Min, W.2
Xie, X.S.3
-
33
-
-
24644450199
-
Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies
-
Collin D, Ritort F, Jarzynski C, Smith SB, Tinoco I Jr, Bustamante C. 2005. Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies. Nature 437: 231-234.
-
(2005)
Nature
, vol.437
, pp. 231-234
-
-
Collin, D.1
Ritort, F.2
Jarzynski, C.3
Smith, S.B.4
Tinoco Jr., I.5
Bustamante, C.6
-
35
-
-
62449216538
-
Following movement of the L1 stalk between three functional states in single ribosomes
-
Cornish PV, Ermolenko DN, Staple DW, Hoang L, Hickerson RP, Noller HF, Ha T. 2009. Following movement of the L1 stalk between three functional states in single ribosomes. Proc Natl Acad Sci 106: 2571-2576.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 2571-2576
-
-
Cornish, P.V.1
Ermolenko, D.N.2
Staple, D.W.3
Hoang, L.4
Hickerson, R.P.5
Noller, H.F.6
Ha, T.7
-
36
-
-
38049077956
-
Visualizing the splicing of single pre-mRNA molecules in whole cell extract
-
Crawford DJ, Hoskins AA, Friedman LJ, Gelles J, Moore MJ. 2008. Visualizing the splicing of single pre-mRNA molecules in whole cell extract. RNA 14: 170-179.
-
(2008)
RNA
, vol.14
, pp. 170-179
-
-
Crawford, D.J.1
Hoskins, A.A.2
Friedman, L.J.3
Gelles, J.4
Moore, M.J.5
-
37
-
-
66149152243
-
Mitigating unwanted photophysical processes for improved single-molecule fluorescence imaging
-
Dave R, Terry DS, Munro JB, Blanchard SC. 2009. Mitigating unwanted photophysical processes for improved single-molecule fluorescence imaging. Biophys J 96: 2371-2381.
-
(2009)
Biophys J
, vol.96
, pp. 2371-2381
-
-
Dave, R.1
Terry, D.S.2
Munro, J.B.3
Blanchard, S.C.4
-
38
-
-
33747886005
-
The ribosome's response to codon-anticodon mismatches
-
Daviter T, Gromadski KB, Rodnina MV. 2006. The ribosome's response to codon-anticodon mismatches. Biochimie 88: 1001-1011.
-
(2006)
Biochimie
, vol.88
, pp. 1001-1011
-
-
Daviter, T.1
Gromadski, K.B.2
Rodnina, M.V.3
-
39
-
-
33644798018
-
The hybrid state of tRNA binding is an authentic translation elongation intermediate
-
Dorner S, Brunelle JL, Sharma D, Green R. 2006. The hybrid state of tRNA binding is an authentic translation elongation intermediate. Nat Struct Mol Biol 13: 234-241.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 234-241
-
-
Dorner, S.1
Brunelle, J.L.2
Sharma, D.3
Green, R.4
-
40
-
-
79956044918
-
Electronic spin detection in molecules using scanning-tunneling-microscopy-assisted electron-spin resonance
-
Durkin C, Welland ME. 2002. Electronic spin detection in molecules using scanning-tunneling-microscopy-assisted electron-spin resonance. Appl Phys Lett 80: 458-460.
-
(2002)
Appl Phys Lett
, vol.80
, pp. 458-460
-
-
Durkin, C.1
Welland, M.E.2
-
41
-
-
73549106134
-
Natural amino acids do not require their native tRNAs for efficient selection by the ribosome
-
Effraim PR, Wang J, Englander MT, Avins J, Leyh TS, Gonzalez RL Jr, Cornish VW. 2009. Natural amino acids do not require their native tRNAs for efficient selection by the ribosome. Nat Chem Biol 5: 947-953.
-
(2009)
Nat Chem Biol
, vol.5
, pp. 947-953
-
-
Effraim, P.R.1
Wang, J.2
Englander, M.T.3
Avins, J.4
Leyh, T.S.5
Gonzalez Jr., R.L.6
Cornish, V.W.7
-
42
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, et al 2009. Real-time DNA sequencing from single polymerase molecules. Science 323: 133-138.
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
Peluso, P.7
Rank, D.8
Baybayan, P.9
Bettman, B.10
-
44
-
-
42949126723
-
Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation
-
Fei J, Kosuri P, MacDougall DD, Gonzalez RL Jr. 2008. Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation. Mol Cell 30: 348-359.
-
(2008)
Mol Cell
, vol.30
, pp. 348-359
-
-
Fei, J.1
Kosuri, P.2
Macdougall, D.D.3
Gonzalez Jr., R.L.4
-
45
-
-
70349470607
-
Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation
-
Fei J, Bronson JE, Hofman JM, Srinivas RL, Wiggins CH, Gonzalez RL Jr. 2009. Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation. Proc Natl Acad Sci 106: 15702-15707.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 15702-15707
-
-
Fei, J.1
Bronson, J.E.2
Hofman, J.M.3
Srinivas, R.L.4
Wiggins, C.H.5
Gonzalez Jr., R.L.6
-
47
-
-
77950391683
-
Aminoglycoside activity observed on single pre-translocation ribosome complexes
-
Feldman MB, Terry DS, Altman RB, Blanchard SC. 2010. Aminoglycoside activity observed on single pre-translocation ribosome complexes. Nat Chem Biol 6: 54-62.
-
(2010)
Nat Chem Biol
, vol.6
, pp. 54-62
-
-
Feldman, M.B.1
Terry, D.S.2
Altman, R.B.3
Blanchard, S.C.4
-
48
-
-
0037015022
-
Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase
-
Forde NR, Izhaky D, Woodcock GR, Wuite GJ, Bustamante C. 2002. Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase. Proc Natl Acad Sci 99: 11682-11687.
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 11682-11687
-
-
Forde, N.R.1
Izhaky, D.2
Woodcock, G.R.3
Wuite, G.J.4
Bustamante, C.5
-
49
-
-
84981779372
-
Zwischenmolekulare energiewanderung und fluoreszenz
-
Förster T. 1948. Zwischenmolekulare energiewanderung und fluoreszenz. Annalen Der Physik 2: 55-75.
-
(1948)
Annalen Der Physik
, vol.2
, pp. 55-75
-
-
Förster, T.1
-
50
-
-
0034691576
-
A ratchet-like inter-subunit reorganization of the ribosome during translocation
-
Frank J, Agrawal RK. 2000. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature 406: 318-322.
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
51
-
-
77953625418
-
Structure and dynamics of a processive Brownian motor: The translating ribosome
-
Frank J, Gonzalez RL Jr. 2010. Structure and dynamics of a processive Brownian motor: the translating ribosome. Annu Rev Biochem 79: 381-412.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 381-412
-
-
Frank, J.1
Gonzalez Jr., R.L.2
-
52
-
-
38049178477
-
The process of mRNA-tRNA translocation
-
Frank J, Gao H, Sengupta J, Gao N, Taylor DJ. 2007. The process of mRNA-tRNA translocation. Proc Natl Acad Sci 104: 19671-19678.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 19671-19678
-
-
Frank, J.1
Gao, H.2
Sengupta, J.3
Gao, N.4
Taylor, D.J.5
-
53
-
-
37149010437
-
Quantitative studies of ribosome conformational dynamics
-
Fraser CS, Doudna JA. 2007. Quantitative studies of ribosome conformational dynamics. Q Rev Biophys 40: 163-189.
-
(2007)
Q Rev Biophys
, vol.40
, pp. 163-189
-
-
Fraser, C.S.1
Doudna, J.A.2
-
54
-
-
0028945654
-
Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution
-
Funatsu T, Harada Y, Tokunaga M, Saito K, Yanagida T. 1995. Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution. Nature 374: 555-559.
-
(1995)
Nature
, vol.374
, pp. 555-559
-
-
Funatsu, T.1
Harada, Y.2
Tokunaga, M.3
Saito, K.4
Yanagida, T.5
-
55
-
-
0031431079
-
Imaging and nano-manipulation of single biomolecules
-
Funatsu T, Harada Y, Higuchi H, Tokunaga M, Saito K, Ishii Y, Vale RD, Yanagida T. 1997. Imaging and nano-manipulation of single biomolecules. Biophys Chem 68: 63-72.
-
(1997)
Biophys Chem
, vol.68
, pp. 63-72
-
-
Funatsu, T.1
Harada, Y.2
Higuchi, H.3
Tokunaga, M.4
Saito, K.5
Ishii, Y.6
Vale, R.D.7
Yanagida, T.8
-
56
-
-
77957952605
-
Roomtemperature detection of a single molecule's absorption by photothermal contrast
-
Gaiduk A, Yorulmaz M, Ruijgrok PV, Orrit M. 2010. Roomtemperature detection of a single molecule's absorption by photothermal contrast. Science 330: 353-356.
-
(2010)
Science
, vol.330
, pp. 353-356
-
-
Gaiduk, A.1
Yorulmaz, M.2
Ruijgrok, P.V.3
Orrit, M.4
-
57
-
-
34147206187
-
Backtracking determines the force sensitivity of RNAP II in a factordependent manner
-
Galburt EA, Grill SW, Wiedmann A, Lubkowska L, Choy J, Nogales E, Kashlev M, Bustamante C. 2007. Backtracking determines the force sensitivity of RNAP II in a factordependent manner. Nature 446: 820-823.
-
(2007)
Nature
, vol.446
, pp. 820-823
-
-
Galburt, E.A.1
Grill, S.W.2
Wiedmann, A.3
Lubkowska, L.4
Choy, J.5
Nogales, E.6
Kashlev, M.7
Bustamante, C.8
-
58
-
-
84886634813
-
Factor-free ('non-enzymic') and factordependent systems of translation of polyuridylic acid by Escherichia coli ribosomes
-
Gavrilova LP, Kostiashkina OE, Koteliansky VE, Rutkevitch NM, Spirin AS. 1976. Factor-free ('non-enzymic') and factordependent systems of translation of polyuridylic acid by Escherichia coli ribosomes. J Mol Biol 101: 537-552.
-
(1976)
J Mol Biol
, vol.101
, pp. 537-552
-
-
Gavrilova, L.P.1
Kostiashkina, O.E.2
Koteliansky, V.E.3
Rutkevitch, N.M.4
Spirin, A.S.5
-
59
-
-
77954814800
-
Conformational sampling of aminoacyl- tRNA during selection on the bacterial ribosome
-
Geggier P, Dave R, Feldman MB, Terry DS, Altman RB, Munro JB, Blanchard SC. 2010. Conformational sampling of aminoacyl- tRNA during selection on the bacterial ribosome. J Mol Biol 399: 576-595.
-
(2010)
J Mol Biol
, vol.399
, pp. 576-595
-
-
Geggier, P.1
Dave, R.2
Feldman, M.B.3
Terry, D.S.4
Altman, R.B.5
Munro, J.B.6
Blanchard, S.C.7
-
60
-
-
36248958685
-
Thiostrepton inhibition of tRNA delivery to the ribosome
-
Gonzalez RL Jr, Chu S, Puglisi JD. 2007. Thiostrepton inhibition of tRNA delivery to the ribosome. RNA 13: 2091-2097.
-
(2007)
RNA
, vol.13
, pp. 2091-2097
-
-
Gonzalez Jr., R.L.1
Chu, S.2
Puglisi, J.D.3
-
62
-
-
0034807927
-
Single-molecule fluorescence resonance energy transfer
-
Ha T. 2001. Single-molecule fluorescence resonance energy transfer. Methods 25: 78-86.
-
(2001)
Methods
, vol.25
, pp. 78-86
-
-
Ha, T.1
-
63
-
-
0029987587
-
Probing the interaction between two single molecules: Fluorescence resonance energy transfer between a single donor and a single acceptor
-
Ha T, Enderle T, Ogletree DF, Chemla DS, Selvin PR, Weiss S. 1996. Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor. Proc Natl Acad Sci 93: 6264-6268.
-
(1996)
Proc Natl Acad Sci
, vol.93
, pp. 6264-6268
-
-
Ha, T.1
Enderle, T.2
Ogletree, D.F.3
Chemla, D.S.4
Selvin, P.R.5
Weiss, S.6
-
64
-
-
0033529972
-
Ligand-induced conformational changes observed in single RNA molecules
-
Ha T, Zhuang X, Kim HD, Orr JW, Williamson JR, Chu S. 1999. Ligand-induced conformational changes observed in single RNA molecules. Proc Natl Acad Sci 96: 9077-9082.
-
(1999)
Proc Natl Acad Sci
, vol.96
, pp. 9077-9082
-
-
Ha, T.1
Zhuang, X.2
Kim, H.D.3
Orr, J.W.4
Williamson, J.R.5
Chu, S.6
-
65
-
-
0037057630
-
Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase
-
Ha T, Rasnik I, Cheng W, Babcock HP, Gauss GH, Lohman TM, Chu S. 2002. Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. Nature 419: 638-641.
-
(2002)
Nature
, vol.419
, pp. 638-641
-
-
Ha, T.1
Rasnik, I.2
Cheng, W.3
Babcock, H.P.4
Gauss, G.H.5
Lohman, T.M.6
Chu, S.7
-
66
-
-
34249945258
-
Far-field optical nanoscopy
-
Hell SW. 2007. Far-field optical nanoscopy. Science 316: 1153-1158.
-
(2007)
Science
, vol.316
, pp. 1153-1158
-
-
Hell, S.W.1
-
67
-
-
50149109300
-
Single-molecule studies of RNA polymerase: Motoring along
-
Herbert KM, Greenleaf WJ, Block SM. 2008. Single-molecule studies of RNA polymerase: motoring along. Annu Rev Biochem 77: 149-176.
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 149-176
-
-
Herbert, K.M.1
Greenleaf, W.J.2
Block, S.M.3
-
69
-
-
84975568363
-
Optical microscopic observation of single small molecules
-
Hirschfeld T. 1976. Optical microscopic observation of single small molecules. Appl Opt 15: 2965-2966.
-
(1976)
Appl Opt
, vol.15
, pp. 2965-2966
-
-
Hirschfeld, T.1
-
70
-
-
4143071283
-
Single-molecule three-color FRET
-
Hohng S, Joo C, Ha T. 2004. Single-molecule three-color FRET. Biophys J 87: 1328-1337.
-
(2004)
Biophys J
, vol.87
, pp. 1328-1337
-
-
Hohng, S.1
Joo, C.2
Ha, T.3
-
71
-
-
34247584538
-
Inter subunit movement is required for ribosomal translocation
-
Horan LH, Noller HF. 2007. Inter subunit movement is required for ribosomal translocation. Proc Natl Acad Sci 104: 4881-4885.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 4881-4885
-
-
Horan, L.H.1
Noller, H.F.2
-
72
-
-
78650512639
-
Breaking the diffraction barrier: Super-resolution imaging of cells
-
Huang B, Babcock H, Zhuang X. 2010. Breaking the diffraction barrier: super-resolution imaging of cells. Cell 143: 1047-1058.
-
(2010)
Cell
, vol.143
, pp. 1047-1058
-
-
Huang, B.1
Babcock, H.2
Zhuang, X.3
-
73
-
-
0035652115
-
Direct observation of the triplet lifetime quenching of single dye molecules by molecular oxygen
-
Hubner CG, Renn A, Renge I, Wild UP. 2001. Direct observation of the triplet lifetime quenching of single dye molecules by molecular oxygen. J Chem Phys 115: 9619-9622.
-
(2001)
J Chem Phys
, vol.115
, pp. 9619-9622
-
-
Hubner, C.G.1
Renn, A.2
Renge, I.3
Wild, U.P.4
-
74
-
-
44449166776
-
Single-molecule FRET with total internal reflection microscopy
-
(ed. PR Selvin, T Ha, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Joo C, Ha T. 2007. Single-molecule FRET with total internal reflection microscopy. In Single molecule techniques: a laboratory manual (ed. PR Selvin, T Ha), pp. 3-36. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2007)
Single Molecule Techniques: A Laboratory Manual
, pp. 3-36
-
-
Joo, C.1
Ha, T.2
-
75
-
-
0032526979
-
EF-G-catalyzed translocation of anticodon stem-loop analogs of transfer RNA in the ribosome
-
Joseph S, Noller HF. 1998. EF-G-catalyzed translocation of anticodon stem-loop analogs of transfer RNA in the ribosome. EMBO J 17: 3478-3483.
-
(1998)
EMBO J
, vol.17
, pp. 3478-3483
-
-
Joseph, S.1
Noller, H.F.2
-
76
-
-
23744455796
-
Alternating-laser excitation of single molecules
-
Kapanidis AN, Laurence TA, Lee NK, Margeat E, Kong X, Weiss S. 2005. Alternating-laser excitation of single molecules. Acc Chem Res 38: 523-533.
-
(2005)
Acc Chem Res
, vol.38
, pp. 523-533
-
-
Kapanidis, A.N.1
Laurence, T.A.2
Lee, N.K.3
Margeat, E.4
Kong, X.5
Weiss, S.6
-
77
-
-
36549020733
-
Fluctuations of transfer RNAs between classical and hybrid states
-
Kim HD, Puglisi J, Chu S. 2007. Fluctuations of transfer RNAs between classical and hybrid states. Biophys J 93: 3575-3582.
-
(2007)
Biophys J
, vol.93
, pp. 3575-3582
-
-
Kim, H.D.1
Puglisi, J.2
Chu, S.3
-
78
-
-
0001549693
-
Magnetic resonance of a single molecular spin
-
Köhler J, Disselhorst JAJM, Donckers MCJM, Groenen EJJ, Schmidt J, Moerner WE. 1993. Magnetic resonance of a single molecular spin. Nature 363: 242-244.
-
(1993)
Nature
, vol.363
, pp. 242-244
-
-
Köhler, J.1
Disselhorst, J.A.J.M.2
Donckers, M.C.J.M.3
Groenen, E.J.J.4
Schmidt, J.5
Moerner, W.E.6
-
79
-
-
78649980415
-
Single molecule sensitivity in optical absorption at room temperature
-
Kukura P, Celebrano M, Renn A, Sandoghdar V. 2010. Single molecule sensitivity in optical absorption at room temperature. Phys Chem Lett 1: 3323-3327.
-
(2010)
Phys Chem Lett
, vol.1
, pp. 3323-3327
-
-
Kukura, P.1
Celebrano, M.2
Renn, A.3
Sandoghdar, V.4
-
80
-
-
17444366080
-
Simultaneous, coincident optical trapping and single-molecule fluorescence
-
Lang MJ, Fordyce PM, Engh AM, Neuman KC, Block SM. 2004. Simultaneous, coincident optical trapping and single-molecule fluorescence. Nat Methods 1: 133-139.
-
(2004)
Nat Methods
, vol.1
, pp. 133-139
-
-
Lang, M.J.1
Fordyce, P.M.2
Engh, A.M.3
Neuman, K.C.4
Block, S.M.5
-
81
-
-
35348852506
-
The role of fluctuations in tRNA selection by the ribosome
-
Lee TH, Blanchard SC, Kim HD, Puglisi JD, Chu S. 2007. The role of fluctuations in tRNA selection by the ribosome. Proc Natl Acad Sci 104: 13661-13665.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 13661-13665
-
-
Lee, T.H.1
Blanchard, S.C.2
Kim, H.D.3
Puglisi, J.D.4
Chu, S.5
-
82
-
-
78650272919
-
Single molecule four-color FRET
-
Lee J, Lee S, Ragunathan K, Joo C, Ha T, Hohng S. 2010. Single molecule four-color FRET. Angew Chem Int Ed Engl 49: 9922-9925.
-
(2010)
Angew Chem Int Ed Engl
, vol.49
, pp. 9922-9925
-
-
Lee, J.1
Lee, S.2
Ragunathan, K.3
Joo, C.4
Ha, T.5
Hohng, S.6
-
83
-
-
0037474152
-
Zero-mode waveguides for single-molecule analysis at high concentrations
-
Levene MJ, Korlach J, Turner SW, Foquet M, Craighead HG, Webb WW. 2003. Zero-mode waveguides for single-molecule analysis at high concentrations. Science 299: 682-686.
-
(2003)
Science
, vol.299
, pp. 682-686
-
-
Levene, M.J.1
Korlach, J.2
Turner, S.W.3
Foquet, M.4
Craighead, H.G.5
Webb, W.W.6
-
84
-
-
0034612346
-
Atomic force microscopy reveals the mechanical design of a modular protein
-
Li H, Oberhauser AF, Fowler SB, Clarke J, Fernandez JM. 2000. Atomic force microscopy reveals the mechanical design of a modular protein. Proc Natl Acad Sci 97: 6527-6531.
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 6527-6531
-
-
Li, H.1
Oberhauser, A.F.2
Fowler, S.B.3
Clarke, J.4
Fernandez, J.M.5
-
85
-
-
33646131832
-
Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods
-
Li PT, Collin D, Smith SB, Bustamante C, Tinoco I Jr. 2006. Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods. Biophys J 90: 250-260.
-
(2006)
Biophys J
, vol.90
, pp. 250-260
-
-
Li, P.T.1
Collin, D.2
Smith, S.B.3
Bustamante, C.4
Tinoco Jr., I.5
-
87
-
-
77953493553
-
Single-moleucle studies using magnetic traps
-
(ed. PR Selvin, T Ha). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Lionnet T, Allemand J-F, Revyakin A, Strick TR, Saleh OA, Bensimon D, Croquette V. 2008. Single-moleucle studies using magnetic traps. In Single-molecule techniques, a laboratory manual (ed. PR Selvin, T Ha). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2008)
Single-molecule Techniques, a Laboratory Manual
-
-
Lionnet, T.1
Allemand, J.-F.2
Revyakin, A.3
Strick, T.R.4
Saleh, O.A.5
Bensimon, D.6
Croquette, V.7
-
88
-
-
0035957720
-
Reversible unfolding of single RNA molecules by mechanical force
-
Liphardt J, Onoa B, Smith SB, Tinoco I Jr, Bustamante C. 2001. Reversible unfolding of single RNA molecules by mechanical force. Science 292: 733-737.
-
(2001)
Science
, vol.292
, pp. 733-737
-
-
Liphardt, J.1
Onoa, B.2
Smith, S.B.3
Tinoco Jr., I.4
Bustamante, C.5
-
89
-
-
0037036070
-
Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality
-
Liphardt J, Dumont S, Smith SB, Tinoco I Jr, Bustamante C. 2002. Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality. Science 296: 1832-1835.
-
(2002)
Science
, vol.296
, pp. 1832-1835
-
-
Liphardt, J.1
Dumont, S.2
Smith, S.B.3
Tinoco Jr., I.4
Bustamante, C.5
-
90
-
-
44949200024
-
Parallel confocal detection of single molecules in real time
-
Lundquist PM, Zhong CF, Zhao PQ, Tomaney AB, Peluso PS, Dixon J, Bettman B, Lacroix Y, Kwo DP, McCullough E, et al. 2008. Parallel confocal detection of single molecules in real time. Opt Lett 33: 1026-1028.
-
(2008)
Opt Lett
, vol.33
, pp. 1026-1028
-
-
Lundquist, P.M.1
Zhong, C.F.2
Zhao, P.Q.3
Tomaney, A.B.4
Peluso, P.S.5
Dixon, J.6
Bettman, B.7
Lacroix, Y.8
Kwo, D.P.9
McCullough, E.10
-
91
-
-
78149443288
-
Single-molecule study of viomycin's inhibition mechanism on ribosome translocation
-
Ly CT, Altuntop ME, Wang YH. 2010. Single-molecule study of viomycin's inhibition mechanism on ribosome translocation. Biochemistry 49: 9732-9738.
-
(2010)
Biochemistry
, vol.49
, pp. 9732-9738
-
-
Ly, C.T.1
Altuntop, M.E.2
Wang, Y.H.3
-
92
-
-
0000793711
-
Imaging and time-resolved spectroscopy of single molecules at an interface
-
Macklin JJ, Trautman JK, Harris TD, Brus LE. 1996. Imaging and time-resolved spectroscopy of single molecules at an interface. Science 272: 255-258.
-
(1996)
Science
, vol.272
, pp. 255-258
-
-
Macklin, J.J.1
Trautman, J.K.2
Harris, T.D.3
Brus, L.E.4
-
93
-
-
34247609813
-
Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments
-
Manosas M, Wen JD, Li PT, Smith SB, Bustamante C, Tinoco I Jr, Ritort F. 2007. Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments. Biophys J 92: 3010-3021.
-
(2007)
Biophys J
, vol.92
, pp. 3010-3021
-
-
Manosas, M.1
Wen, J.D.2
Li, P.T.3
Smith, S.B.4
Bustamante, C.5
Tinoco Jr., I.6
Ritort, F.7
-
94
-
-
55749099506
-
Irreversible chemical steps control intersubunit dynamics during translation
-
Marshall RA, Dorywalska M, Puglisi JD. 2008. Irreversible chemical steps control intersubunit dynamics during translation. Proc Natl Acad Sci 105: 15364-15369.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 15364-15369
-
-
Marshall, R.A.1
Dorywalska, M.2
Puglisi, J.D.3
-
95
-
-
67649646602
-
GTP hydrolysis by IF2 guides progression of the ribosome into elongation
-
Marshall RA, Aitken CE, Puglisi JD. 2009. GTP hydrolysis by IF2 guides progression of the ribosome into elongation. Mol Cell 35: 37-47.
-
(2009)
Mol Cell
, vol.35
, pp. 37-47
-
-
Marshall, R.A.1
Aitken, C.E.2
Puglisi, J.D.3
-
96
-
-
0037330690
-
Visualizing single molecules inside living cells using total internal reflection fluorescence microscopy
-
Mashanov GI, Tacon D, Knight AE, Peckham M, Molloy JE. 2003. Visualizing single molecules inside living cells using total internal reflection fluorescence microscopy. Methods 29: 142-152.
-
(2003)
Methods
, vol.29
, pp. 142-152
-
-
Mashanov, G.I.1
Tacon, D.2
Knight, A.E.3
Peckham, M.4
Molloy, J.E.5
-
97
-
-
78649774217
-
Cod on-dependent tRNA fluctuations monitored with fluorescence polarization
-
Mishra PP, Qureshi MT, Ren WR, Lee TH. 2010. Cod on-dependent tRNA fluctuations monitored with fluorescence polarization. Biophys J 99: 3849-3858.
-
(2010)
Biophys J
, vol.99
, pp. 3849-3858
-
-
Mishra, P.P.1
Qureshi, M.T.2
Ren, W.R.3
Lee, T.H.4
-
98
-
-
0024458904
-
Intermediate states in the movement of transfer RNA in the ribosome
-
Moazed D, Noller HF. 1989. Intermediate states in the movement of transfer RNA in the ribosome. Nature 342: 142-148.
-
(1989)
Nature
, vol.342
, pp. 142-148
-
-
Moazed, D.1
Noller, H.F.2
-
99
-
-
4244084400
-
Optical-detection and spectroscopy of single molecules in a solid
-
Moerner WE, Kador L. 1989. Optical-detection and spectroscopy of single molecules in a solid. Phys Rev Lett 62: 2535-2538.
-
(1989)
Phys Rev Lett
, vol.62
, pp. 2535-2538
-
-
Moerner, W.E.1
Kador, L.2
-
101
-
-
53349152992
-
Zero-mode waveguides: Sub-wavelength nanostructures for single molecule studies at high concentrations
-
Moran-Mirabal JM, Craighead HG. 2008. Zero-mode waveguides: sub-wavelength nanostructures for single molecule studies at high concentrations. Methods 46: 11-17.
-
(2008)
Methods
, vol.46
, pp. 11-17
-
-
Moran-Mirabal, J.M.1
Craighead, H.G.2
-
102
-
-
76249114762
-
Spontaneous formation of the unlocked state of the ribosome is a multistep process
-
Munro JB, Altman RB, Tung CS, Cate JH, Sanbonmatsu KY, Blanchard SC. 2010a. Spontaneous formation of the unlocked state of the ribosome is a multistep process. Proc Natl Acad Sci 107: 709-714.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 709-714
-
-
Munro, J.B.1
Altman, R.B.2
Tung, C.S.3
Cate, J.H.4
Sanbonmatsu, K.Y.5
Blanchard, S.C.6
-
103
-
-
77149151868
-
A fast dynamic mode of the EF-G-bound ribosome
-
Munro JB, Altman RB, Tung CS, Sanbonmatsu KY, Blanchard SC. 2010b. A fast dynamic mode of the EF-G-bound ribosome. EMBO J 29:770-781.
-
(2010)
EMBO J
, vol.29
, pp. 770-781
-
-
Munro, J.B.1
Altman, R.B.2
Tung, C.S.3
Sanbonmatsu, K.Y.4
Blanchard, S.C.5
-
104
-
-
78649830457
-
Correlated conformational events in EF-G and the ribosome regulate translocation
-
Munro JB, Wasserman MR, Altman RB, Wang LY, Blanchard SC. 2010c. Correlated conformational events in EF-G and the ribosome regulate translocation. Nat Struct Mol Biol 17: 1470-1477.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 1470-1477
-
-
Munro, J.B.1
Wasserman, M.R.2
Altman, R.B.3
Wang, L.Y.4
Blanchard, S.C.5
-
105
-
-
84975556458
-
Ultrasensitive laserinduced fluorescence detection in hydrodynamically focused flows
-
Nguyen DC, Keller RA, Trkula M. 1987. Ultrasensitive laserinduced fluorescence detection in hydrodynamically focused flows. J Opt Soc Am B 4: 138-143.
-
(1987)
J Opt Soc Am B
, vol.4
, pp. 138-143
-
-
Nguyen, D.C.1
Keller, R.A.2
Trkula, M.3
-
106
-
-
0040391480
-
Single pentacene molecules detected by fluorescence excitation in a para-terphenyl crystal
-
Orrit M, Bernard J. 1990. Single pentacene molecules detected by fluorescence excitation in a para-terphenyl crystal. Phys Rev Lett 65: 2716-2719.
-
(1990)
Phys Rev Lett
, vol.65
, pp. 2716-2719
-
-
Orrit, M.1
Bernard, J.2
-
107
-
-
0032535207
-
Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome
-
Pape T, Wintermeyer W, Rodnina MV 1998. Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome. EMBO J 17: 7490-7497.
-
(1998)
EMBO J
, vol.17
, pp. 7490-7497
-
-
Pape, T.1
Wintermeyer, W.2
Rodnina, M.V.3
-
108
-
-
0034669323
-
The use of protocatechuate dioxygenase for maintaining anaerobic conditions in biochemical experiments
-
Patil PV, Ballou DP. 2000. The use of protocatechuate dioxygenase for maintaining anaerobic conditions in biochemical experiments. Anal Biochem 286: 187-192.
-
(2000)
Anal Biochem
, vol.286
, pp. 187-192
-
-
Patil, P.V.1
Ballou, D.P.2
-
110
-
-
0024689006
-
Single-molecule fluorescence detection-auto-correlation criterion and experimental realization with phycoerythrin
-
Peck K, Stryer L, Glazer AN, Mathies RA. 1989. Single-molecule fluorescence detection-auto-correlation criterion and experimental realization with phycoerythrin. Proc Natl Acad Sci 86: 4087-4091.
-
(1989)
Proc Natl Acad Sci
, vol.86
, pp. 4087-4091
-
-
Peck, K.1
Stryer, L.2
Glazer, A.N.3
Mathies, R.A.4
-
111
-
-
0028766432
-
Direct observation of tubelike motion of a single polymer-chain
-
Perkins TT, Smite DE, Chu S. 1994. Direct observation of tubelike motion of a single polymer-chain. Science 264: 819-822.
-
(1994)
Science
, vol.264
, pp. 819-822
-
-
Perkins, T.T.1
Smite, D.E.2
Chu, S.3
-
112
-
-
0014690239
-
Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors
-
Pestka S. 1969. Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors. J Biol Chem 244: 1533-1539.
-
(1969)
J Biol Chem
, vol.244
, pp. 1533-1539
-
-
Pestka, S.1
-
113
-
-
15944428132
-
Optimal oxygen concentration for the detection of single indocarbocyanine molecules in a polymeric matrix
-
Piwonski H, Kolos R, Meixner A, Sepiol J. 2005. Optimal oxygen concentration for the detection of single indocarbocyanine molecules in a polymeric matrix. Chem Phys Lett 405: 352-356.
-
(2005)
Chem Phys Lett
, vol.405
, pp. 352-356
-
-
Piwonski, H.1
Kolos, R.2
Meixner, A.3
Sepiol, J.4
-
114
-
-
79959676389
-
The ribosome uses two active mechanisms to unwind mRNA during translation
-
in press
-
Qu X, Wen JD, Lancaster L, Noller HF, Bustamante C, Tinoco I Jr. 2011. The ribosome uses two active mechanisms to unwind mRNA during translation. Nature (in press).
-
(2011)
Nature
-
-
Qu, X.1
Wen, J.D.2
Lancaster, L.3
Noller, H.F.4
Bustamante, C.5
Tinoco Jr., I.6
-
115
-
-
44449103347
-
Probing polysaccharide and protein mechanics by atomic force microscopy
-
ed. PR Selvin, T Ha, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Rabbi M, Marszalek PE. 2008. Probing polysaccharide and protein mechanics by atomic force microscopy. In Single molecule techniques, a laboratory manual (ed. PR Selvin, T Ha). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2008)
Single Molecule Techniques, a Laboratory Manual
-
-
Rabbi, M.1
Marszalek, P.E.2
-
116
-
-
23744433971
-
Surfaces and orientations: Much to FRET about?
-
Rasnik I, McKinney SA, Ha T. 2005. Surfaces and orientations: much to FRET about? Acc Chem Res 38: 542-548.
-
(2005)
Acc Chem Res
, vol.38
, pp. 542-548
-
-
Rasnik, I.1
McKinney, S.A.2
Ha, T.3
-
117
-
-
78649873931
-
Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites
-
Ratje AH, Loerke J, Mikolajka A, Brünner M, Hildebrand PW, Starosta AL, Dönhöfer A, Connell SR, Fucini P, Mielke T, et al. 2010. Head swivel on the ribosome facilitates translocation by means of intra-subunit tRNA hybrid sites. Nature 468: 713-716.
-
(2010)
Nature
, vol.468
, pp. 713-716
-
-
Ratje, A.H.1
Loerke, J.2
Mikolajka, A.3
Brünner, M.4
Hildebrand, P.W.5
Starosta, A.L.6
Dönhöfer, A.7
Connell, S.R.8
Fucini, P.9
Mielke, T.10
-
118
-
-
31844456049
-
Oxygen-dependent photochemistry of fluorescent dyes studied at the single molecule level
-
Renn A, Seelig J, Sandoghdar V. 2006. Oxygen-dependent photochemistry of fluorescent dyes studied at the single molecule level. Mol Phys 104: 409-414.
-
(2006)
Mol Phys
, vol.104
, pp. 409-414
-
-
Renn, A.1
Seelig, J.2
Sandoghdar, V.3
-
119
-
-
85075939638
-
Diffusion of single molecules through a Gaussian laser beam
-
Rigler R, Mets U. 1992. Diffusion of single molecules through a Gaussian laser beam. Laser Spectrosc Biomol 1921: 239-248.
-
(1992)
Laser Spectrosc Biomol
, vol.1921
, pp. 239-248
-
-
Rigler, R.1
Mets, U.2
-
120
-
-
0037109040
-
A two-state kinetic model for the unfolding of single molecules by mechanical force
-
Ritort F, Bustamante C, Tinoco I Jr. 2002. A two-state kinetic model for the unfolding of single molecules by mechanical force. Proc Natl Acad Sci 99: 13544-13548.
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 13544-13548
-
-
Ritort, F.1
Bustamante, C.2
Tinoco Jr., I.3
-
121
-
-
66049161006
-
Recent mechanistic insights into eukaryotic ribosomes
-
Rodnina MV, Wintermeyer W. 2009. Recent mechanistic insights into eukaryotic ribosomes. Curr Opin Cell Biol 21: 435-443.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 435-443
-
-
Rodnina, M.V.1
Wintermeyer, W.2
-
122
-
-
0028109919
-
Transient conformational states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu
-
Rodnina MV, Fricke R, Wintermeyer W. 1994. Transient conformational states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu. Biochemistry 33: 12267-12275.
-
(1994)
Biochemistry
, vol.33
, pp. 12267-12275
-
-
Rodnina, M.V.1
Fricke, R.2
Wintermeyer, W.3
-
125
-
-
78651119908
-
Measurement of activity of single molecules of b-d-galactosidase
-
Rotman B. 1961. Measurement of activity of single molecules of b-d-galactosidase. Proc Natl Acad Sci 47: 1981.
-
(1961)
Proc Natl Acad Sci
, vol.47
, pp. 1981
-
-
Rotman, B.1
-
126
-
-
44449134820
-
A practical guide to singlemolecule FRET
-
Roy R, Hohng S, Ha T. 2008. A practical guide to singlemolecule FRET. Nat Methods 5: 507-516.
-
(2008)
Nat Methods
, vol.5
, pp. 507-516
-
-
Roy, R.1
Hohng, S.2
Ha, T.3
-
127
-
-
70350588648
-
The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA
-
Schmeing TM, Voorhees RM, Kelley AC, Gao YG, Murphy FVt, Weir JR, Ramakrishnan V. 2009. The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA. Science 326: 688-694.
-
(2009)
Science
, vol.326
, pp. 688-694
-
-
Schmeing, T.M.1
Voorhees, R.M.2
Kelley, A.C.3
Gao, Y.G.4
Fvt, M.5
Weir, J.R.6
Ramakrishnan, V.7
-
128
-
-
62649162306
-
GTPase activation of elongation factor EF-Tu by the ribosome during decoding
-
Schuette JC, Murphy FVt, Kelley AC, Weir JR, Giesebrecht J, Connell SR, Loerke J, Mielke T, Zhang W, Penczek PA, et al. 2009. GTPase activation of elongation factor EF-Tu by the ribosome during decoding. EMBO J 28: 755-765.
-
(2009)
EMBO J
, vol.28
, pp. 755-765
-
-
Schuette, J.C.1
Fvt, M.2
Kelley, A.C.3
Weir, J.R.4
Giesebrecht, J.5
Connell, S.R.6
Loerke, J.7
Mielke, T.8
Zhang, W.9
Penczek, P.A.10
-
129
-
-
27644491082
-
Structures of the bacterial ribosome at 3.5 A ° resolution
-
Schuwirth BS, Borovinskaya MA, Hau CW, Zhang W, Vila-Sanjurjo A, Holton JM, Cate JH. 2005. Structures of the bacterial ribosome at 3.5 A ° resolution. Science 310: 827-834.
-
(2005)
Science
, vol.310
, pp. 827-834
-
-
Schuwirth, B.S.1
Borovinskaya, M.A.2
Hau, C.W.3
Zhang, W.4
Vila-Sanjurjo, A.5
Holton, J.M.6
Cate, J.H.7
-
131
-
-
77953231020
-
The folding cooperativity of a protein is controlled by its chain topology
-
Shank EA, Cecconi C, Dill JW, Marqusee S, Bustamante C. 2010. The folding cooperativity of a protein is controlled by its chain topology. Nature 465: 637-640.
-
(2010)
Nature
, vol.465
, pp. 637-640
-
-
Shank, E.A.1
Cecconi, C.2
Dill, J.W.3
Marqusee, S.4
Bustamante, C.5
-
132
-
-
65249132345
-
Ribosomal translocation: One step closer to the molecular mechanism
-
Shoji S, Walker SE, Fredrick K. 2009. Ribosomal translocation: one step closer to the molecular mechanism. ACS Chem Biol 27: 27.
-
(2009)
ACS Chem Biol
, vol.27
, pp. 27
-
-
Shoji, S.1
Walker, S.E.2
Fredrick, K.3
-
133
-
-
0037286741
-
Optical-trap force transducer that operates by direct measurement of light momentum
-
Smith S, Cui Y, Bustamante C. 2003. Optical-trap force transducer that operates by direct measurement of light momentum. Methods Enzymol 361: 134-162.
-
(2003)
Methods Enzymol
, vol.361
, pp. 134-162
-
-
Smith, S.1
Cui, Y.2
Bustamante, C.3
-
134
-
-
0030770467
-
Visualization of elongation factor Tu on the Escherichia coli ribosome
-
Stark H, Rodnina MV, Rinke-Appel J, Brimacombe R, Wintermeyer W, van Heel M. 1997. Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 389: 403-406.
-
(1997)
Nature
, vol.389
, pp. 403-406
-
-
Stark, H.1
Rodnina, M.V.2
Rinke-Appel, J.3
Brimacombe, R.4
Wintermeyer, W.5
van Heel, M.6
-
135
-
-
0036829080
-
Ribosome interactions of aminoacyltRNA and elongation factor Tu in the codon-recognition complex
-
Stark H, Rodnina MV, Wieden HJ, Zemlin F, Wintermeyer W, van Heel M. 2002. Ribosome interactions of aminoacyltRNA and elongation factor Tu in the codon-recognition complex. Nat Struct Biol 9: 849-854.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 849-854
-
-
Stark, H.1
Rodnina, M.V.2
Wieden, H.J.3
Zemlin, F.4
Wintermeyer, W.5
van Heel, M.6
-
136
-
-
0041306000
-
Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases
-
Stone MD, Bryant Z, Crisona NJ, Smith SB, Vologodskii A, Bustamante C, Cozzarelli NR. 2003. Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases. Proc Natl Acad Sci 100: 8654-8659.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 8654-8659
-
-
Stone, M.D.1
Bryant, Z.2
Crisona, N.J.3
Smith, S.B.4
Vologodskii, A.5
Bustamante, C.6
Cozzarelli, N.R.7
-
137
-
-
77955102352
-
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells
-
Taniguchi Y, Choi PJ, Li GW, Chen H, Babu M, Hearn J, Emili A, Xie XS. 2010. Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells. Science 329: 533-538.
-
(2010)
Science
, vol.329
, pp. 533-538
-
-
Taniguchi, Y.1
Choi, P.J.2
Li, G.W.3
Chen, H.4
Babu, M.5
Hearn, J.6
Emili, A.7
Xie, X.S.8
-
138
-
-
77954575187
-
Visualizing DNA replication at the single-molecule level
-
Tanner NA, van Oijen AM. 2010. Visualizing DNA replication at the single-molecule level. Methods Enzymol 474: 259-278.
-
(2010)
Methods Enzymol
, vol.474
, pp. 259-278
-
-
Tanner, N.A.1
van Oijen, A.M.2
-
139
-
-
53849087812
-
Fluorescent probes for bioimaging applications
-
Terai T, Nagano T. 2008. Fluorescent probes for bioimaging applications. Curr Opin Chem Biol 12: 515-521.
-
(2008)
Curr Opin Chem Biol
, vol.12
, pp. 515-521
-
-
Terai, T.1
Nagano, T.2
-
140
-
-
2942592663
-
Force as a useful variable in reactions: Unfolding RNA
-
Tinoco I Jr. 2004. Force as a useful variable in reactions: unfolding RNA. Annu Rev Biophys Biomol Struct 33: 363-385.
-
(2004)
Annu Rev Biophys Biomol Struct
, vol.33
, pp. 363-385
-
-
Tinoco Jr., I.1
-
141
-
-
0037058902
-
The effect of force on thermodynamics and kinetics of single molecule reactions
-
Tinoco I Jr, Bustamante C. 2002. The effect of force on thermodynamics and kinetics of single molecule reactions. Biophys Chem 101-102: 513-533.
-
(2002)
Biophys Chem
, vol.101-102
, pp. 513-533
-
-
Tinoco Jr., I.1
Bustamante, C.2
-
142
-
-
68349152494
-
Simulation and analysis of singleribosome translation
-
doi: 10.1088/1478-3975/6/2/025006
-
Tinoco I Jr, Wen J-D. 2009. Simulation and analysis of singleribosome translation. Phys Biol 6: 025006. doi: 10.1088/1478-3975/6/2/025006.
-
(2009)
Phys Biol
, vol.6
, pp. 025006
-
-
Tinoco Jr., I.1
Wen, J.-D.2
-
143
-
-
33845681159
-
Determination of thermodynamics and kinetics of RNA reactions by force
-
Tinoco I Jr, Li PTX, Bustamante C. 2006. Determination of thermodynamics and kinetics of RNA reactions by force. Q Rev Biophys 39: 325-360.
-
(2006)
Q Rev Biophys
, vol.39
, pp. 325-360
-
-
Tinoco Jr., I.1
Li, P.T.X.2
Bustamante, C.3
-
144
-
-
77951107295
-
Real-time tRNA transit on single translating ribosomes at codon resolution
-
Uemura S, Aitken CE, Korlach J, Flusberg BA, Turner SW, Puglisi JD. 2010. Real-time tRNA transit on single translating ribosomes at codon resolution. Nature 464: 1012-1017.
-
(2010)
Nature
, vol.464
, pp. 1012-1017
-
-
Uemura, S.1
Aitken, C.E.2
Korlach, J.3
Flusberg, B.A.4
Turner, S.W.5
Puglisi, J.D.6
-
145
-
-
0036646535
-
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process
-
Valle M, Sengupta J, Swami NK, Grassucci RA, Burkhardt N, Nierhaus KH, Agrawal RK, Frank J. 2002. Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. EMBO J 21: 3557-3567.
-
(2002)
EMBO J
, vol.21
, pp. 3557-3567
-
-
Valle, M.1
Sengupta, J.2
Swami, N.K.3
Grassucci, R.A.4
Burkhardt, N.5
Nierhaus, K.H.6
Agrawal, R.K.7
Frank, J.8
-
146
-
-
0242407184
-
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryoelectron microscopy
-
Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J. 2003. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryoelectron microscopy. Nat Struct Biol 10: 899-906.
-
(2003)
Nat Struct Biol
, vol.10
, pp. 899-906
-
-
Valle, M.1
Zavialov, A.2
Li, W.3
Stagg, S.M.4
Sengupta, J.5
Nielsen, R.C.6
Nissen, P.7
Harvey, S.C.8
Ehrenberg, M.9
Frank, J.10
-
147
-
-
59049096394
-
Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis
-
Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, et al. 2009. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proc Natl Acad Sci 106: 1063-1068.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 1063-1068
-
-
Villa, E.1
Sengupta, J.2
Trabuco, L.G.3
Lebarron, J.4
Baxter, W.T.5
Shaikh, T.R.6
Grassucci, R.A.7
Nissen, P.8
Ehrenberg, M.9
Schulten, K.10
-
149
-
-
44449097780
-
Do-ityourself guide: How to use the modern single-molecule toolkit
-
Walter NG, Huang C-Y, Manzo AJ, Sobhy MA. 2008. Do-ityourself guide: how to use the modern single-molecule toolkit. Nat Methods 5: 475-489.
-
(2008)
Nat Methods
, vol.5
, pp. 475-489
-
-
Walter, N.G.1
Huang, C.-Y.2
Manzo, A.J.3
Sobhy, M.A.4
-
150
-
-
78650409178
-
A microfluidic approach for investigating the temperature dependence of biomolecular activity with single-molecule resolution
-
Wang B, Ho J, Fei J, Gonzalez RL Jr, Lin Q. 2011. A microfluidic approach for investigating the temperature dependence of biomolecular activity with single-molecule resolution. Lab Chip 11: 274-281.
-
(2011)
Lab Chip
, vol.11
, pp. 274-281
-
-
Wang, B.1
Ho, J.2
Fei, J.3
Gonzalez Jr., R.L.4
Lin, Q.5
-
151
-
-
0033548686
-
Fluorescence spectroscopy of single biomolecules
-
Weiss S. 1999. Fluorescence spectroscopy of single biomolecules. Science 283: 1676-1683.
-
(1999)
Science
, vol.283
, pp. 1676-1683
-
-
Weiss, S.1
-
152
-
-
34247640029
-
Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results
-
Wen JD, Manosas M, Li PTX, Smith SB, Bustamante C, Ritort F, Tinoco I Jr. 2007. Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results. Biophys J 92: 2996-3009.
-
(2007)
Biophys J
, vol.92
, pp. 2996-3009
-
-
Wen, J.D.1
Manosas, M.2
Li, P.T.X.3
Smith, S.B.4
Bustamante, C.5
Ritort, F.6
Tinoco Jr., I.7
-
153
-
-
41149155366
-
Following translation by single ribosomes one codon at a time
-
Wen JD, Lancaster L, Hodges C, Zeri AC, Yoshimura SH, Noller HF, Bustamante C, Tinoco I Jr. 2008. Following translation by single ribosomes one codon at a time. Nature 452: 598-603.
-
(2008)
Nature
, vol.452
, pp. 598-603
-
-
Wen, J.D.1
Lancaster, L.2
Hodges, C.3
Zeri, A.C.4
Yoshimura, S.H.5
Noller, H.F.6
Bustamante, C.7
Tinoco Jr., I.8
-
154
-
-
33646547262
-
Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques
-
Wiita AP, Ainavarapu SR, Huang HH, Fernandez JM. 2006. Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques. Proc Natl Acad Sci 103: 7222-7227.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 7222-7227
-
-
Wiita, A.P.1
Ainavarapu, S.R.2
Huang, H.H.3
Fernandez, J.M.4
-
155
-
-
25844527373
-
Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements
-
Wozniak AK, Nottrott S, Kuhn-Holsken E, Schroder GF, Grubmuller H, Luhrmann R, Seidel CAM, Oesterhelt F. 2005. Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements. RNA 11: 1545-1554.
-
(2005)
RNA
, vol.11
, pp. 1545-1554
-
-
Wozniak, A.K.1
Nottrott, S.2
Kuhn-Holsken, E.3
Schroder, G.F.4
Grubmuller, H.5
Luhrmann, R.6
Seidel, C.A.M.7
Oesterhelt, F.8
-
156
-
-
33645033645
-
Probing gene expression in live cells, one protein molecule at a time
-
Yu J, Xiao J, Ren X, Lao K, Xie XS. 2006. Probing gene expression in live cells, one protein molecule at a time. Science 311: 1600-1603.
-
(2006)
Science
, vol.311
, pp. 1600-1603
-
-
Yu, J.1
Xiao, J.2
Ren, X.3
Lao, K.4
Xie, X.S.5
-
157
-
-
69249112231
-
Structures of the ribosome in intermediate states of ratcheting
-
Zhang W, Dunkle JA, Cate JH. 2009. Structures of the ribosome in intermediate states of ratcheting. Science 325: 1014-1017.
-
(2009)
Science
, vol.325
, pp. 1014-1017
-
-
Zhang, W.1
Dunkle, J.A.2
Cate, J.H.3
-
158
-
-
77954580825
-
Force-fluorescence spectroscopy at the single-molecule level
-
Zhou R, Schlierf M, Ha T. 2010. Force-fluorescence spectroscopy at the single-molecule level. Methods Enzymol 475: 405-426.
-
(2010)
Methods Enzymol
, vol.475
, pp. 405-426
-
-
Zhou, R.1
Schlierf, M.2
Ha, T.3
|