-
2
-
-
0033624169
-
GTPase mechanisms and functions of translation factors on the ribosome
-
Rodnina,M.V., Stark,H., Savelsbergh,A., Wieden,H.J., Mohr,D., Matassova,N.B., Peske,F., Daviter,T., Gualerzi,C.O. and Wintermeyer,W. (2000) GTPase mechanisms and functions of translation factors on the ribosome. Biol. Chem., 381, 377-387.
-
(2000)
Biol. Chem.
, vol.381
, pp. 377-387
-
-
Rodnina, M.V.1
Stark, H.2
Savelsbergh, A.3
Wieden, H.J.4
Mohr, D.5
Matassova, N.B.6
Peske, F.7
Daviter, T.8
Gualerzi, C.O.9
Wintermeyer, W.10
-
3
-
-
0037184536
-
Selection of tRNA by the ribosome requires a transition from an open to a closed form
-
Ogle,J.M., Murphy,F.V.,IV, Tarry,M.J. and Ramakrishnan,V. (2002) Selection of tRNA by the ribosome requires a transition from an open to a closed form. Cell, 111, 721-732.
-
(2002)
Cell
, vol.111
, pp. 721-732
-
-
Ogle, J.M.1
Murphy IV, F.V.2
Tarry, M.J.3
Ramakrishnan, V.4
-
4
-
-
0032982866
-
EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome
-
Agrawal,R.K., Heagle,A.B., Penczek,P., Grassucci,R.A. and Frank,J. (1999) EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome. Nature Struct. Biol., 6, 643-647.
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 643-647
-
-
Agrawal, R.K.1
Heagle, A.B.2
Penczek, P.3
Grassucci, R.A.4
Frank, J.5
-
5
-
-
0034603196
-
Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation
-
Stark,H., Rodnina,M.V., Wieden,H.J., van Heel,M. and Wintermeyer,W. (2000) Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation. Cell, 100, 301-309.
-
(2000)
Cell
, vol.100
, pp. 301-309
-
-
Stark, H.1
Rodnina, M.V.2
Wieden, H.J.3
van Heel, M.4
Wintermeyer, W.5
-
6
-
-
0034691576
-
A ratchet-like intersubunit reorganization of the ribosome during translocation
-
Frank,J. and Agrawal,R.K. (2000) A ratchet-like intersubunit reorganization of the ribosome during translocation. Nature, 406 318-322.
-
(2000)
Nature
, vol.406
, pp. 318-322
-
-
Frank, J.1
Agrawal, R.K.2
-
7
-
-
0033548686
-
Fluorescence spectroscopy of single biomolecules
-
Weiss,S. (1999) Fluorescence spectroscopy of single biomolecules. Science, 283, 1676-1683.
-
(1999)
Science
, vol.283
, pp. 1676-1683
-
-
Weiss, S.1
-
8
-
-
4444313551
-
tRNA dynamics on the ribosome during translation
-
Blanchard,S.C., Kim,H.D., Gonzalez,R.L.Jr, Puglisi,J.D. and Chu,S. (2004) tRNA dynamics on the ribosome during translation. Proc. Natl Acad. Sci. USA, 101, 12893-12898.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12893-12898
-
-
Blanchard, S.C.1
Kim, H.D.2
Gonzalez Jr., R.L.3
Puglisi, J.D.4
Chu, S.5
-
9
-
-
4744365694
-
tRNA selection and kinetic proofreading in translation
-
Blanchard,S.C., Gonzalez,R.L.,Jr, Kim,H.D., Chu,S. and Puglisi,J.D. (2004) tRNA selection and kinetic proofreading in translation. Nature Struct. Mol. Biol., 11, 1008-1014.
-
(2004)
Nature Struct. Mol. Biol.
, vol.11
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez Jr., R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
10
-
-
0028883219
-
Directed hydroxyl radical probing of 16S rRNA using Fe(II) tethered to ribosomal protein S4
-
Heilek,G.M., Marusak,R., Meares,C.F. and Noller,H.F. (1995) Directed hydroxyl radical probing of 16S rRNA using Fe(II) tethered to ribosomal protein S4. Proc. Natl Acad. Sci. USA, 92, 1113-1116.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 1113-1116
-
-
Heilek, G.M.1
Marusak, R.2
Meares, C.F.3
Noller, H.F.4
-
11
-
-
0019274775
-
Distances between 3′ ends of ribosomal ribormcleic acids reassembled into Escherichia coli ribosomes
-
Odom,O.W.,Jr, Robbins,D.J., Lynch,J., Dottavio-Martin,D., Kramer,G. and Hardesty,B. (1980) Distances between 3′ ends of ribosomal ribormcleic acids reassembled into Escherichia coli ribosomes. Biochemistry, 19, 5947-5954.
-
(1980)
Biochemistry
, vol.19
, pp. 5947-5954
-
-
Odom Jr., O.W.1
Robbins, D.J.2
Lynch, J.3
Dottavio-Martin, D.4
Kramer, G.5
Hardesty, B.6
-
12
-
-
0033956506
-
Genetic and biochemical manipulations of the small ribosomal subunit from Thermus thermophilus HB8
-
Auerbach,T., Pioletti,M., Avila,H., Anagnostopoulos,K., Weinstein,S., Franceschi,F. and Yonath,A. (2000) Genetic and biochemical manipulations of the small ribosomal subunit from Thermus thermophilus HB8. J. Biomol. Struct. Dyn., 17, 617-628.
-
(2000)
J. Biomol. Struct. Dyn.
, vol.17
, pp. 617-628
-
-
Auerbach, T.1
Pioletti, M.2
Avila, H.3
Anagnostopoulos, K.4
Weinstein, S.5
Franceschi, F.6
Yonath, A.7
-
13
-
-
0342881009
-
DNA hybridization electron microscopy: Ribosomal RNA nucleotides 1392-1407 are exposed in the cleft of the small subunit
-
Oakes,M.I., Clark,M.W., Henderson,E. and Lake,J.A. (1986) DNA hybridization electron microscopy: ribosomal RNA nucleotides 1392-1407 are exposed in the cleft of the small subunit. Proc. Natl Acad. Sci. USA, 83, 275-279.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 275-279
-
-
Oakes, M.I.1
Clark, M.W.2
Henderson, E.3
Lake, J.A.4
-
14
-
-
0345590989
-
Involvement of bases 787-795 of Escherichia coli 16S ribosomal RNA in ribosomal subunit association
-
Tapprich,W.E. and Hill,W.E. (1986) Involvement of bases 787-795 of Escherichia coli 16S ribosomal RNA in ribosomal subunit association. Proc. Natl Acad. Sci. USA, 83, 556-560.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 556-560
-
-
Tapprich, W.E.1
Hill, W.E.2
-
15
-
-
0026602705
-
Probing dynamic changes in rRNA conformation in the 30S subunit of the Escherichia coli ribosome
-
Weller,J.W. and Hill,W.E. (1992) Probing dynamic changes in rRNA conformation in the 30S subunit of the Escherichia coli ribosome. Biochemistry, 31, 2748-2757.
-
(1992)
Biochemistry
, vol.31
, pp. 2748-2757
-
-
Weller, J.W.1
Hill, W.E.2
-
16
-
-
0028079886
-
Ribosomal components neighboring the conserved 518-533 loop of 16S rRNA in 30S subunits
-
Alexander,R.W., Muralikrishna,P. and Cooperman,B.S. (1994) Ribosomal components neighboring the conserved 518-533 loop of 16S rRNA in 30S subunits. Biochemistry, 33, 12109-12118.
-
(1994)
Biochemistry
, vol.33
, pp. 12109-12118
-
-
Alexander, R.W.1
Muralikrishna, P.2
Cooperman, B.S.3
-
17
-
-
0031789907
-
Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
-
Fuchs,B.M., Wallner,G., Beisker,W., Schwippl,I., Ludwig,W. and Amann,R. (1998) Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol., 64 4973-4982.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4973-4982
-
-
Fuchs, B.M.1
Wallner, G.2
Beisker, W.3
Schwippl, I.4
Ludwig, W.5
Amann, R.6
-
18
-
-
0035145060
-
In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes
-
Fuchs,B.M., Syutsubo,K., Ludwig,W. and Amann,R. (2001) In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol., 67 961-968.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 961-968
-
-
Fuchs, B.M.1
Syutsubo, K.2
Ludwig, W.3
Amann, R.4
-
19
-
-
0019358924
-
Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E.coli
-
Brosius,J., Ullrich,A., Raker,M.A., Gray,A., Dull,T.J., Gutell,R.R. and Noller,H.F. (1981) Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E.coli. Plasmid, 6, 112-118.
-
(1981)
Plasmid
, vol.6
, pp. 112-118
-
-
Brosius, J.1
Ullrich, A.2
Raker, M.A.3
Gray, A.4
Dull, T.J.5
Gutell, R.R.6
Noller, H.F.7
-
20
-
-
0033515041
-
An Escherichia coli strain with all chromosomal rRNA operons inactivated: Complete exchange of rRNA genes between bacteria
-
Asai,T., Zaporojets,D., Squires,C. and Squires,C.L. (1999) An Escherichia coli strain with all chromosomal rRNA operons inactivated: complete exchange of rRNA genes between bacteria. Proc. Natl Acad. Sci. USA, 96, 1971-1976.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 1971-1976
-
-
Asai, T.1
Zaporojets, D.2
Squires, C.3
Squires, C.L.4
-
21
-
-
0025737972
-
A functional pseudoknot in 16S ribosomal RNA
-
Powers,T. and Noller,H.F. (1991) A functional pseudoknot in 16S ribosomal RNA. EMBO J., 10, 2203-2214.
-
(1991)
EMBO J.
, vol.10
, pp. 2203-2214
-
-
Powers, T.1
Noller, H.F.2
-
23
-
-
0034716948
-
Interaction of translation initiation factor IF1 with the E.coli ribosomal A site
-
Dahlquist,K.D. and Puglisi,J.D. (2000) Interaction of translation initiation factor IF1 with the E.coli ribosomal A site. J. Mol. Biol., 299, 1-15.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 1-15
-
-
Dahlquist, K.D.1
Puglisi, J.D.2
-
24
-
-
0028408538
-
Purification procedure for bacterial translational initiation factors IF2 and IF3
-
Soffientini,A., Lorenzetti,R., Gastaldo,L., Parlett,J.H., Spurio,R., La Teana,A. and Islam,K. (1994) Purification procedure for bacterial translational initiation factors IF2 and IF3. Protein Expr. Purif., 5, 118-124.
-
(1994)
Protein Expr. Purif.
, vol.5
, pp. 118-124
-
-
Soffientini, A.1
Lorenzetti, R.2
Gastaldo, L.3
Parlett, J.H.4
Spurio, R.5
La Teana, A.6
Islam, K.7
-
26
-
-
0242399529
-
Isolation and properties of protein factors involved in polypeptide chain initiation in Escherichia coli
-
Dubnoff,J.S. and Maitra,U. (1971) Isolation and properties of protein factors involved in polypeptide chain initiation in Escherichia coli. Meth. Enzymol., 20, 248-261.
-
(1971)
Meth. Enzymol.
, vol.20
, pp. 248-261
-
-
Dubnoff, J.S.1
Maitra, U.2
-
28
-
-
0014353212
-
Studies on the thionucleotides in transfer ribonucleic acid. Addition of N-ethylmaleimide and formation of mixed disulfides with thiol compounds
-
Carbon,J. and David,H. (1968) Studies on the thionucleotides in transfer ribonucleic acid. Addition of N-ethylmaleimide and formation of mixed disulfides with thiol compounds. Biochemistry, 7, 3851-3858.
-
(1968)
Biochemistry
, vol.7
, pp. 3851-3858
-
-
Carbon, J.1
David, H.2
-
29
-
-
0019814934
-
Gel electrophoretic studies on ribosomal protein L7/L12 and the Escherichia coli 50S subunit
-
Tokimatsu,H., Strycharz,W.A. and Dahlberg,A.E. (1981) Gel electrophoretic studies on ribosomal protein L7/L12 and the Escherichia coli 50S subunit. J. Mol. Biol., 152, 397-412.
-
(1981)
J. Mol. Biol.
, vol.152
, pp. 397-412
-
-
Tokimatsu, H.1
Strycharz, W.A.2
Dahlberg, A.E.3
-
30
-
-
0020645076
-
Bacterial in vitro protein-synthesizing systems
-
Chambliss,G.H., Henkin,T.M. and Leventhal,J.M. (1983) Bacterial in vitro protein-synthesizing systems. Meth. Enzymol. 101, 598-605.
-
(1983)
Meth. Enzymol.
, vol.101
, pp. 598-605
-
-
Chambliss, G.H.1
Henkin, T.M.2
Leventhal, J.M.3
-
31
-
-
0029873397
-
Rate of translation of natural mRNAs in an optimized in vitro system
-
Pavlov,M.Y. and Ehrenberg,M. (1996) Rate of translation of natural mRNAs in an optimized in vitro system. Arch. Biochem. Biophys., 328, 9-16.
-
(1996)
Arch. Biochem. Biophys.
, vol.328
, pp. 9-16
-
-
Pavlov, M.Y.1
Ehrenberg, M.2
-
32
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly,B.T., Brodersen,D.E., Clemons,W.M.,Jr, Morgan-Warren,R.J., Carter,A.P., Vonrhein,C., Hartsch,T. and Ramakrishnan,V. (2000) Structure of the 30S ribosomal subunit. Nature 407, 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
33
-
-
0034268836
-
Structure of functionally activated small ribosomal subunit at 3.3 Å resolution
-
Schluenzen,F., Tocilj,A., Zarivach,R., Harms,J., Gluehmann,M., Janell,D., Bashan,A., Bartels,H., Agmon,I., Franceschi,F. and Yonath,A. (2000) Structure of functionally activated small ribosomal subunit at 3.3 Å resolution. Cell, 102, 615-623.
-
(2000)
Cell
, vol.102
, pp. 615-623
-
-
Schluenzen, F.1
Tocilj, A.2
Zarivach, R.3
Harms, J.4
Gluehmann, M.5
Janell, D.6
Bashan, A.7
Bartels, H.8
Agmon, I.9
Franceschi, F.10
Yonath, A.11
-
34
-
-
0035805213
-
Crystal structure of the ribosome at 5.5 Å resolution
-
Yusupov,M.M., Yusupova,G.Zh., Baucom,A., Lieberman,K., Earnest,T.N., Cate,J.H.D. and Noller,H.F. (2001) Crystal structure of the ribosome at 5.5 Å resolution. Science, 292, 883-896.
-
(2001)
Science
, vol.292
, pp. 883-896
-
-
Yusupov, M.M.1
Yusupova, G.Zh.2
Baucom, A.3
Lieberman, K.4
Earnest, T.N.5
Cate, J.H.D.6
Noller, H.F.7
-
35
-
-
0031462334
-
Measuring the thermodynamics of RNA secondary structure formation
-
SantaLucia,J.,Jr and Turner,D.H. (1997) Measuring the thermodynamics of RNA secondary structure formation. Biopolymers, 44, 309-319.
-
(1997)
Biopolymers
, vol.44
, pp. 309-319
-
-
SantaLucia Jr., J.1
Turner, D.H.2
-
36
-
-
0033572714
-
Direct three-dimensional localization and positive identification of RNA helices within the ribosome by means of genetic tagging and cryo-electron microscopy
-
Spahn,C.M.T., Grassucci,R.A., Penczek,P. and Frank,J. (1999) Direct three-dimensional localization and positive identification of RNA helices within the ribosome by means of genetic tagging and cryo-electron microscopy. Structure, 7, 1567-1573.
-
(1999)
Structure
, vol.7
, pp. 1567-1573
-
-
Spahn, C.M.T.1
Grassucci, R.A.2
Penczek, P.3
Frank, J.4
-
37
-
-
0035853278
-
Direct localization by cryo-electron microscopy of secondary structural elements in Escherichia coli 23S rRNA which differ from the corresponding regions in Haloarcula marismortui
-
Matadeen,R., Sergiev,P., Leonov,A., Pape,T., van del Sluis,E., Mueller,F., Osswald,M., von Knoblauch,K., Brimacombe,R., Bogdanov,A., van Heel,M. and Dontsova,O. (2001) Direct localization by cryo-electron microscopy of secondary structural elements in Escherichia coli 23S rRNA which differ from the corresponding regions in Haloarcula marismortui. J. Mol. Biol., 307, 1341-1349.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1341-1349
-
-
Matadeen, R.1
Sergiev, P.2
Leonov, A.3
Pape, T.4
van del Sluis, E.5
Mueller, F.6
Osswald, M.7
von Knoblauch, K.8
Brimacombe, R.9
Bogdanov, A.10
van Heel, M.11
Dontsova, O.12
-
38
-
-
0038152834
-
Affinity purification of ribosomes with a lethal G2655C mutation in 23S rRNA that affects the translocation
-
Leonov,A.A., Sergiev,P.V., Bogdanov,A.A., Brimacombe,R. and Dontsova,O.A. (2003) Affinity purification of ribosomes with a lethal G2655C mutation in 23S rRNA that affects the translocation. J. Biol. Chem., 278, 25664-25670.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 25664-25670
-
-
Leonov, A.A.1
Sergiev, P.V.2
Bogdanov, A.A.3
Brimacombe, R.4
Dontsova, O.A.5
-
39
-
-
2542470615
-
The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release
-
Youngman,E.M., Brunelle,J.L., Kochaniak,A.B. and Green,R. (2004) The active site of the ribosome is composed of two layers of conserved nucleotides with distinct roles in peptide bond formation and peptide release. Cell, 117, 589-599.
-
(2004)
Cell
, vol.117
, pp. 589-599
-
-
Youngman, E.M.1
Brunelle, J.L.2
Kochaniak, A.B.3
Green, R.4
|