Role of plasmid in diesel oil degradation by yeast species isolated from petroleum hydrocarbon-contaminated soil

Environmental Technology

Volumn 33, Issue 6, 2012, Pages 645-652

  Chandran, Preethy ^a   Das, Nilanjana ^a  

^a VIT UNIVERSITY   (India)

Author keywords

biodegradation; diesel oil; enzymes; plasmid

Indexed keywords

ALDEHYDES; BIODEGRADATION; CANDIDA; DEGRADATION; DNA; ENZYMES; MACHINERY; MICROBIOLOGY; NAPHTHALENE; PETROLEUM CHEMISTRY; YEAST;

ALCOHOL DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; CANDIDA RUGOSA; CANDIDA TROPICALIS; CYTOCHROME C; CYTOCHROME P450; DEMETHYLASE; DIESEL OIL; GLUTATHIONE S-TRANSFERASES; MONOOXYGENASE ENZYMES; NAPHTHALENE DIOXYGENASE; PLASMID; RHODOTORULA MUCILAGINOSA; SOLE SOURCE OF CARBON; TRICHOSPORON;

DIESEL FUELS;

ALCOHOL DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; AMINOPYRINE N DEMETHYLASE; CATALASE; CYTOCHROME P450; DIESEL FUEL; GLUTATHIONE TRANSFERASE; NAPHTHALENE DERIVATIVE; PETROLEUM DERIVATIVE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE;

BIODEGRADATION; CARBON; DIESEL; ENZYME ACTIVITY; INHIBITION; METABOLISM; PETROLEUM HYDROCARBON; PLASMID; SOIL POLLUTION; YEAST;

ARTICLE; BIOMASS; CANDIDA RUGOSA; CANDIDA TROPICALIS; CARBON SOURCE; CONTROLLED STUDY; CRYPTOCOCCUS LAURENTII; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME KINETICS; NONHUMAN; PLASMID; RHODOTORULA MUCILAGINOSA; SOIL POLLUTION; TRICHOSPORON ASAHII;

CANDIDA RUGOSA; CANDIDA TROPICALIS; CRYPTOCOCCUS LAURENTII; RHODOTORULA MUCILAGINOSA; TRICHOSPORON ASAHII;

EID: 84859183068     PISSN: 09593330     EISSN: 1479487X     Source Type: Journal    
DOI: 10.1080/09593330.2011.587024     Document Type: Article

References (34)

1. L.A. Dillard, H.I. Essaid, and W.N. Herkelrath, Multiple flow modeling of a crude oil spill site with a bimodal permeability distribution, Water. Resour. Res. 33 (1997), pp. 1617-1632.
2. G. Gold-Bouchot, M. Zavala-Coral, O. Zapata-Perez, and V. Ceja-Morena, Hydrocarbon concentration in oysters (Crassostrea virginica) and recent sediments from three coastal lagoons in Tabasco, Mexico, Bull. Environ. Contam. Toxicol. 59 (1997), pp. 430-437.
3. P.A. Vieira, R.B. Vieira, F.P. De França, and V.L. Cardoso, Biodegradation of effluent contaminated with diesel fuel and gasoline, J. Hazard. Mater. 140 (2007), pp. 52-59.
4. J.I. Medina-Belver, P. Marin, A. Delgado, A. Rodriguez-Sanchez, E. Reyes, J.L. Ramos, and S. Marques, Evidence for in situ crude oil biodegradation after the Prestige oil spill, Environ. Microbiol. 7 (2005), pp. 773-779.
5. T.M. April, J.M. Foght, and R.S. Currah, Hydrocarbon degrading filamentous fungi isolated from flare pit soils in northern and western Canada, Can. J. Microbiol. 46 (2000), pp. 38-49.
6. M.D. Salokhe and S.P. Govindar, Effect of carbon source on the biotransformation enzymes in Serratia marcescens, World J. Microbiol. Biotechnol. 15 (1999), pp. 259-263.
7. O. Kappeli, M. Sauer, and A. Fiechter, Convenient procedure for the isolation of highly enriched cytochrome P450 containing microsomal fraction from Candida tropicalis, Anal. Biochem. 126 (1982), pp. 179-182.
8. K.M. Dus, Camphor hydroxylase of Pseudomonas putida, vestiges of sequence homology in cytochrome P-450cam, putidaredoxin and related proteins, Proc. Natl. Acad. Sci. U. S. A. 181 (1984), pp. 1664-1668.
9. H. Fukuda, T. Fujii, H. Daimon, M. Iwata, T. Ogawa, S. Tanase, and Y. Morino, Purification and characterization of cytochrome P-450 from an isobutene forming microorganism, Rhodotorula minuta, Biosci. Biotechnol. Biochem. 57 (1993), pp. 1599-1601.
10. T. Matsuoka, S. Miyakoshi, K. Tanzawa, K. Nakahara, M. Hosobuchi, and N. Serizawa, Purification and characterization of cytochrome P-450sca from Streptomyces carbophilus, Eur. J. Biochem. 184 (1989), pp. 707-713.
11. S.D. Black, M.H. Linger, L.C. Freck, S. Kazemi, and J.A. Galbraith, Affinity isolation and characterization of cytochrome P-450 102 BM-3 from barbiturate-induced Bacillus megaterium, Arch. Biochem. Biophys. 310 (1994), pp. 126-133.
12. J.F. Greene, J. Zheng, D.F. Grant, and B.D. Hammock, Cyto-toxicity of 1,2-epoxynaphthalene is correlated with protein binding and in situ glutathione depletion in cytochrome P4501A1 expressing Sf-21 cells, Toxicol. Sci. 53 (2000), pp. 352-360.
13. C.T.D. Price, I.R. Lee, and J.E. Gustafson, The effects of salicylate on bacteria, Int. J. Biochem. Cell. Biol. 32 (2000), pp. 1029-1043.
14. G.M. Pumphrey and E.L. Madsen, Naphthalene metabolism and growth inhibition by naphthalene in Polaromonas naph-thalenivorans strain CJ2, Microbiology 153 (2007), pp. 3730-3738.
15. S.J. Stohs, S. Ohia, and D. Bagchi, Naphthalene toxicity and antioxidant nutrients, Toxicology 180 (2002), pp. 97-105.
16. W. Park, C.O. Jeon, H. Cadillo, C. DeRito, and E.L. Madsen, Survival of naphthalene-degrading Pseudomonas putida NCIB 9816-4 in naphthalene-amended soils: Toxi-city of naphthalene and its metabolites, Appl. Microbiol. Biotechnol. 64 (2004), pp. 429-435.
17. Y.S. Kang, Y.J. Kim, C.O. Jeon, and W. Park, Characterization of naphthalene-degrading Pseudomonas species isolated from pollutant-contaminated sites: Oxidative stress during their growth on naphthalene, J. Microbiol. Biotechnol. 16 (2006), pp. 1819-1825.
18. J.R. Leahy and R.R. Colwell, Microbial degradation of hydrocarbons in the environment, Microbiol. Rev. 54 (1990), pp. 305-315.
19. A.M. Chakrabarty, Plasmids in Pseudomonas, Annu. Rev. Genet. 10 (1976), pp. 30-40.
20. O.S. Obayori, M.O. Ilori, S.A. Adebusoye, G.O. Oyetibo, and O.O. Amund, Degradation of hydrocarbons and biosur-factant production by Pseudomonas sp strain LP1, World J. Microbiol. Biotechnol. 25 (2009), pp. 1615-1623.
21. L. Michaud, A. Lo Giudice, M. Saitta, and M. De Domenico Vivia, The biodegradation efficiency on diesel oil by two psychotropic Antarctic marine bacteria during a two-month-long experiment, Mar. Res. Bull. 49 (2004), pp. 405-409.
22. O.H. Lowry, N.J. Rosebrough, A.L. Farr, and R.J. Randall, Protein measurement with the folin phenol reagent, J. Biol. Chem. 193 (1951), pp. 265-275.
23. R.A. Kanaly and H.G. Hur, Growth of Phanerochaete chrysosporium on diesel fuel hydrocarbons at neutral pH, Chemosphere 63 (2006), pp. 202-211.
24. S.J. Choi, M. Kim, S.I. Kim, and J.K. Jeon, Microplate assay measurement of cytochrome P450-carbon monoxide complexes, J. Biochem. Mol. Biol. 36 (2003), pp. 332-335.
25. J.A. Garcia-Agundez, A. Luengo, and J. Benitez, Aminopy-rine N-demethylase activity in human liver microsomes, Clin. Pharmacol. Ther. 48 (1990), pp. 490-495.
26. H.U. Bergmeyer, K. Gawehn, and M. Grassl, Enzymes as biochemical reagents, in Methods of Enzymatic Analysis, Academic Press, London, 1974.
27. B.D. Ensley, B.J. Ratzkin, T.D. Osslund, M.J. Simon, L.P. Wackett, and D.T. Gibson, Expression of naphthalene oxidation genes in Escherichia coli results in the biosynthesis of indigo, Science 222 (1983), pp. 167-169.
28. V. Riis, D. Miethe, and W. Babel, A sensitive method for naphthalene oxygenase assay in whole cells, J. Microbiol. Methods 26 (1996), pp. 27-33.
29. Y.S. Kang, Y. Lee, H. Jung, C.O. Jeon, E.L. Madsen, and W. Park, Over expressing antioxidant enzymes enhances naphthalene biodegradation in Pseudomonas sp. strain As1, Microbiology 153 (2007), pp. 3246-3254.
30. W.H. Habig, M.J. Pabst, and W.B. Jakoby, Glutathione S transferases, J. Biol. Chem. 25 (1974), pp. 885-895.
31. A. Lorincz, Quick preparation of plasmid DNA from yeast, Focus 6 (1984), pp. 11.
32. B.T. Ashok, S. Saxena, and J. Musarrat, Isolation and characterization of four polycyclic aromatic hydrocarbon degrading bacteria from soil near an oil refinery, Lett. Appl. Microbiol. 21 (1995), pp. 246-248.
33. B. Agianian, P.A. Tucker, A. Schouten, K. Leonard, B. Bullard, and P. Gros, Structure of a Drosophila sigma class glutathione S-transferase reveals novel active site topography suited for lipid per oxidation products, J. Mol. Biol. 326 (2003), pp. 151-165.
34. S. Zoltan and J.X. Wu, Role of glutathione and catalase in H2O2 detoxification in LPS-activated hepatic endothe-lial and Kupffer cells, Am. J. Physiol. Gastrointest. Liver Physiol. 273 (1997), pp. 1304-1311.