-
1
-
-
0038343499
-
MicroRNA pathways in flies and worms: growth, death, fat, stress, and timing
-
Ambros V, (2003) MicroRNA pathways in flies and worms: growth, death, fat, stress, and timing. Cell 113: 673-676.
-
(2003)
Cell
, vol.113
, pp. 673-676
-
-
Ambros, V.1
-
2
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
4
-
-
33845242919
-
MicroRNAs: regulators of gene expression and cell differentiation
-
Shivdasani RA, (2006) MicroRNAs: regulators of gene expression and cell differentiation. Blood 108: 3646-3653.
-
(2006)
Blood
, vol.108
, pp. 3646-3653
-
-
Shivdasani, R.A.1
-
5
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, et al. (2005) MicroRNA expression profiles classify human cancers. Nature 435: 834-838.
-
(2005)
Nature
, vol.435
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
-
6
-
-
33144490646
-
A microRNA expression signature of human solid tumors defines cancer gene targets
-
Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, et al. (2006) A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci U S A 103: 2257-2261.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 2257-2261
-
-
Volinia, S.1
Calin, G.A.2
Liu, C.G.3
Ambs, S.4
Cimmino, A.5
-
7
-
-
79960104144
-
MicroRNAs in development and disease
-
Sayed D, Abdellatif M, (2011) MicroRNAs in development and disease. Physiol Rev 91: 827-887.
-
(2011)
Physiol Rev
, vol.91
, pp. 827-887
-
-
Sayed, D.1
Abdellatif, M.2
-
8
-
-
18344369543
-
MicroRNA biogenesis: coordinated cropping and dicing
-
Kim VN, (2005) MicroRNA biogenesis: coordinated cropping and dicing. Nat Rev Mol Cell Biol 6: 376-385.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 376-385
-
-
Kim, V.N.1
-
9
-
-
10944254152
-
Transcription and processing of human microRNA precursors
-
Cullen BR, (2004) Transcription and processing of human microRNA precursors. Mol Cell 16: 861-865.
-
(2004)
Mol Cell
, vol.16
, pp. 861-865
-
-
Cullen, B.R.1
-
10
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, et al. (2008) Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Res 18: 610-621.
-
(2008)
Genome Res
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
-
11
-
-
0037370020
-
A uniform system for microRNA annotation
-
Ambros V, Bartel B, Bartel DP, Burge CB, Carrington JC, et al. (2003) A uniform system for microRNA annotation. RNA 9: 277-279.
-
(2003)
RNA
, vol.9
, pp. 277-279
-
-
Ambros, V.1
Bartel, B.2
Bartel, D.P.3
Burge, C.B.4
Carrington, J.C.5
-
12
-
-
78651293534
-
miRBase: integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S, (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-157.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
13
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee RC, Feinbaum RL, Ambros V, (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75: 843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
14
-
-
0034708122
-
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
-
Reinhart BJ, Slack FJ, Basson M, Pasquinelli AE, Bettinger JC, et al. (2000) The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans. Nature 403: 901-906.
-
(2000)
Nature
, vol.403
, pp. 901-906
-
-
Reinhart, B.J.1
Slack, F.J.2
Basson, M.3
Pasquinelli, A.E.4
Bettinger, J.C.5
-
15
-
-
0037321349
-
New microRNAs from mouse and human
-
Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T, (2003) New microRNAs from mouse and human. RNA 9: 175-179.
-
(2003)
RNA
, vol.9
, pp. 175-179
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Meyer, J.3
Borkhardt, A.4
Tuschl, T.5
-
16
-
-
0037197803
-
Identification of tissue-specific microRNAs from mouse
-
Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, et al. (2002) Identification of tissue-specific microRNAs from mouse. Curr Biol 12: 735-739.
-
(2002)
Curr Biol
, vol.12
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
-
17
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau NC, Lim LP, Weinstein EG, Bartel DP, (2001) An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
Bartel, D.P.4
-
18
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee RC, Ambros V, (2001) An extensive class of small RNAs in Caenorhabditis elegans. Science 294: 862-864.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
19
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T, (2001) Identification of novel genes coding for small expressed RNAs. Science 294: 853-858.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
Tuschl, T.4
-
20
-
-
33750953227
-
Whole-genome re-sequencing
-
Bentley DR, (2006) Whole-genome re-sequencing. Curr Opin Genet Dev 16: 545-552.
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 545-552
-
-
Bentley, D.R.1
-
21
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
22
-
-
41749104588
-
Single-molecule DNA sequencing of a viral genome
-
Harris TD, Buzby PR, Babcock H, Beer E, Bowers J, et al. (2008) Single-molecule DNA sequencing of a viral genome. Science 320: 106-109.
-
(2008)
Science
, vol.320
, pp. 106-109
-
-
Harris, T.D.1
Buzby, P.R.2
Babcock, H.3
Beer, E.4
Bowers, J.5
-
23
-
-
46449103738
-
A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
-
Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, et al. (2008) A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res 18: 1051-1063.
-
(2008)
Genome Res
, vol.18
, pp. 1051-1063
-
-
Valouev, A.1
Ichikawa, J.2
Tonthat, T.3
Stuart, J.4
Ranade, S.5
-
24
-
-
24644462173
-
Accurate multiplex polony sequencing of an evolved bacterial genome
-
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, et al. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309: 1728-1732.
-
(2005)
Science
, vol.309
, pp. 1728-1732
-
-
Shendure, J.1
Porreca, G.J.2
Reppas, N.B.3
Lin, X.4
McCutcheon, J.P.5
-
25
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
26
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, et al. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320: 1344-1349.
-
(2008)
Science
, vol.320
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
-
27
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M, (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
28
-
-
41849084855
-
Discovering microRNAs from deep sequencing data using miRDeep
-
Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, et al. (2008) Discovering microRNAs from deep sequencing data using miRDeep. Nat Biotechnol 26: 407-415.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 407-415
-
-
Friedlander, M.R.1
Chen, W.2
Adamidi, C.3
Maaskola, J.4
Einspanier, R.5
-
29
-
-
67650156804
-
Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing
-
Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, et al. (2009) Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing. Plant Physiol 150: 1541-1555.
-
(2009)
Plant Physiol
, vol.150
, pp. 1541-1555
-
-
Pant, B.D.1
Musialak-Lange, M.2
Nuc, P.3
May, P.4
Buhtz, A.5
-
30
-
-
77951527436
-
Deciphering the porcine intestinal microRNA transcriptome
-
Sharbati S, Friedlander MR, Sharbati J, Hoeke L, Chen W, et al. (2010) Deciphering the porcine intestinal microRNA transcriptome. BMC Genomics 11: 275.
-
(2010)
BMC Genomics
, vol.11
, pp. 275
-
-
Sharbati, S.1
Friedlander, M.R.2
Sharbati, J.3
Hoeke, L.4
Chen, W.5
-
31
-
-
79959694145
-
Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data
-
Yang X, Zhang H, Li L, (2011) Global analysis of gene-level microRNA expression in Arabidopsis using deep sequencing data. Genomics 98: 40-46.
-
(2011)
Genomics
, vol.98
, pp. 40-46
-
-
Yang, X.1
Zhang, H.2
Li, L.3
-
32
-
-
81355159096
-
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
-
Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N, (2011) miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res.
-
(2011)
Nucleic Acids Res
-
-
Friedlander, M.R.1
Mackowiak, S.D.2
Li, N.3
Chen, W.4
Rajewsky, N.5
-
33
-
-
80052701585
-
miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants
-
Yang X, Li L, (2011) miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants. Bioinformatics 27: 2614-2615.
-
(2011)
Bioinformatics
, vol.27
, pp. 2614-2615
-
-
Yang, X.1
Li, L.2
-
34
-
-
79959953839
-
miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments
-
Hackenberg M, Rodriguez-Ezpeleta N, Aransay AM, (2011) miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments. Nucleic Acids Res 39: W132-138.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Hackenberg, M.1
Rodriguez-Ezpeleta, N.2
Aransay, A.M.3
-
35
-
-
67849114241
-
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
-
Hackenberg M, Sturm M, Langenberger D, Falcon-Perez JM, Aransay AM, (2009) miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments. Nucleic Acids Res 37: W68-76.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hackenberg, M.1
Sturm, M.2
Langenberger, D.3
Falcon-Perez, J.M.4
Aransay, A.M.5
-
36
-
-
84859048483
-
Deep sequencing of short RNAs reveals novel microRNAs in minor salivary glands of patients with Sjogren's syndrome
-
Tandon M, Gallo A, Jang SI, Illei G, Alevizos I, (2011) Deep sequencing of short RNAs reveals novel microRNAs in minor salivary glands of patients with Sjogren's syndrome. Oral Dis.
-
(2011)
Oral Dis
-
-
Tandon, M.1
Gallo, A.2
Jang, S.I.3
Illei, G.4
Alevizos, I.5
-
37
-
-
70449639806
-
miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression
-
Wang WC, Lin FM, Chang WC, Lin KY, Huang HD, et al. (2009) miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression. BMC Bioinformatics 10: 328.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 328
-
-
Wang, W.C.1
Lin, F.M.2
Chang, W.C.3
Lin, K.Y.4
Huang, H.D.5
-
38
-
-
75549084786
-
deepBase: a database for deeply annotating and mining deep sequencing data
-
Yang JH, Shao P, Zhou H, Chen YQ, Qu LH, (2010) deepBase: a database for deeply annotating and mining deep sequencing data. Nucleic Acids Res 38: D123-130.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Yang, J.H.1
Shao, P.2
Zhou, H.3
Chen, Y.Q.4
Qu, L.H.5
-
39
-
-
77950547534
-
miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
-
Hendrix D, Levine M, Shi W, (2010) miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data. Genome Biol 11: R39.
-
(2010)
Genome Biol
, vol.11
-
-
Hendrix, D.1
Levine, M.2
Shi, W.3
-
40
-
-
77954330416
-
mirTools: microRNA profiling and discovery based on high-throughput sequencing
-
Zhu E, Zhao F, Xu G, Hou H, Zhou L, et al. (2010) mirTools: microRNA profiling and discovery based on high-throughput sequencing. Nucleic Acids Res 38: W392-397.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Zhu, E.1
Zhao, F.2
Xu, G.3
Hou, H.4
Zhou, L.5
-
41
-
-
67249093200
-
Prediction of novel microRNA genes in cancer-associated genomic regions-a combined computational and experimental approach
-
Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, et al. (2009) Prediction of novel microRNA genes in cancer-associated genomic regions-a combined computational and experimental approach. Nucleic Acids Res 37: 3276-3287.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 3276-3287
-
-
Oulas, A.1
Boutla, A.2
Gkirtzou, K.3
Reczko, M.4
Kalantidis, K.5
-
42
-
-
79952200065
-
Utilization of SSCprofiler to predict a new miRNA gene
-
Oulas A, Poirazi P, (2011) Utilization of SSCprofiler to predict a new miRNA gene. Methods Mol Biol 676: 243-252.
-
(2011)
Methods Mol Biol
, vol.676
, pp. 243-252
-
-
Oulas, A.1
Poirazi, P.2
-
43
-
-
80052792180
-
mirExplorer: Detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features
-
Guan DG, Liao JY, Qu ZH, Zhang Y, Qu LH, (2011) mirExplorer: Detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features. RNA Biol 8.
-
(2011)
RNA Biol
, vol.8
-
-
Guan, D.G.1
Liao, J.Y.2
Qu, Z.H.3
Zhang, Y.4
Qu, L.H.5
-
44
-
-
77956508095
-
MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
-
Mathelier A, Carbone A, (2010) MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data. Bioinformatics 26: 2226-2234.
-
(2010)
Bioinformatics
, vol.26
, pp. 2226-2234
-
-
Mathelier, A.1
Carbone, A.2
-
45
-
-
79957802938
-
MicroRNAs and their predicted target messenger RNAs are deregulated by exposure to a carcinogenic dose of comfrey in rat liver
-
Li Z, Fuscoe JC, Chen T, (2011) MicroRNAs and their predicted target messenger RNAs are deregulated by exposure to a carcinogenic dose of comfrey in rat liver. Environ Mol Mutagen 52: 469-478.
-
(2011)
Environ Mol Mutagen
, vol.52
, pp. 469-478
-
-
Li, Z.1
Fuscoe, J.C.2
Chen, T.3
-
46
-
-
77951190661
-
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
-
Git A, Dvinge H, Salmon-Divon M, Osborne M, Kutter C, et al. (2010) Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression. RNA 16: 991-1006.
-
(2010)
RNA
, vol.16
, pp. 991-1006
-
-
Git, A.1
Dvinge, H.2
Salmon-Divon, M.3
Osborne, M.4
Kutter, C.5
-
47
-
-
79952467615
-
Novel and conserved micrornas in Dalian purple urchin (Strongylocentrotus nudus) identified by next generation sequencing
-
Wei Z, Liu X, Feng T, Chang Y, (2011) Novel and conserved micrornas in Dalian purple urchin (Strongylocentrotus nudus) identified by next generation sequencing. Int J Biol Sci 7: 180-192.
-
(2011)
Int J Biol Sci
, vol.7
, pp. 180-192
-
-
Wei, Z.1
Liu, X.2
Feng, T.3
Chang, Y.4
-
48
-
-
77952671774
-
TargetSpy: a supervised machine learning approach for microRNA target prediction
-
Sturm M, Hackenberg M, Langenberger D, Frishman D, (2010) TargetSpy: a supervised machine learning approach for microRNA target prediction. BMC Bioinformatics 11: 292.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 292
-
-
Sturm, M.1
Hackenberg, M.2
Langenberger, D.3
Frishman, D.4
-
50
-
-
38049176566
-
A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis
-
Chen J, Agrawal V, Rattray M, West MA, St Clair DA, et al. (2007) A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis. BMC Genomics 8: 414.
-
(2007)
BMC Genomics
, vol.8
, pp. 414
-
-
Chen, J.1
Agrawal, V.2
Rattray, M.3
West, M.A.4
St Clair, D.A.5
-
51
-
-
34347241740
-
Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates
-
Liu F, Jenssen TK, Trimarchi J, Punzo C, Cepko CL, et al. (2007) Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates. BMC Genomics 8: 153.
-
(2007)
BMC Genomics
, vol.8
, pp. 153
-
-
Liu, F.1
Jenssen, T.K.2
Trimarchi, J.3
Punzo, C.4
Cepko, C.L.5
-
52
-
-
50649089207
-
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y, (2008) RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18: 1509-1517.
-
(2008)
Genome Res
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
53
-
-
70350088369
-
Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing
-
Willenbrock H, Salomon J, Sokilde R, Barken KB, Hansen TN, et al. (2009) Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing. RNA 15: 2028-2034.
-
(2009)
RNA
, vol.15
, pp. 2028-2034
-
-
Willenbrock, H.1
Salomon, J.2
Sokilde, R.3
Barken, K.B.4
Hansen, T.N.5
-
54
-
-
80053046353
-
Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys
-
Su Z, Li Z, Chen T, Li QZ, Fang H, et al. (2011) Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys. Chem Res Toxicol 24: 1486-1493.
-
(2011)
Chem Res Toxicol
, vol.24
, pp. 1486-1493
-
-
Su, Z.1
Li, Z.2
Chen, T.3
Li, Q.Z.4
Fang, H.5
-
55
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman RC, Farh KK, Burge CB, Bartel DP, (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19: 92-105.
-
(2009)
Genome Res
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
56
-
-
33745742180
-
Mutations induced by carcinogenic doses of aristolochic acid in kidney of Big Blue transgenic rats
-
Chen L, Mei N, Yao L, Chen T, (2006) Mutations induced by carcinogenic doses of aristolochic acid in kidney of Big Blue transgenic rats. Toxicol Lett 165: 250-256.
-
(2006)
Toxicol Lett
, vol.165
, pp. 250-256
-
-
Chen, L.1
Mei, N.2
Yao, L.3
Chen, T.4
-
57
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
58
-
-
78651323093
-
Rfam: Wikipedia, clans and the "decimal" release
-
Gardner PP, Daub J, Tate J, Moore BL, Osuch IH, et al. (2011) Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res 39: D141-145.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.3
Moore, B.L.4
Osuch, I.H.5
-
59
-
-
58149189877
-
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
-
Chan PP, Lowe TM, (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37: D93-97.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chan, P.P.1
Lowe, T.M.2
-
60
-
-
13444293342
-
RNAdb-a comprehensive mammalian noncoding RNA database
-
Pang KC, Stephen S, Engstrom PG, Tajul-Arifin K, Chen W, et al. (2005) RNAdb-a comprehensive mammalian noncoding RNA database. Nucleic Acids Res 33: D125-130.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pang, K.C.1
Stephen, S.2
Engstrom, P.G.3
Tajul-Arifin, K.4
Chen, W.5
-
61
-
-
84859015880
-
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
-
Pruitt KD, Tatusova T, Brown GR, Maglott DR, (2011) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res.
-
(2011)
Nucleic Acids Res
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
62
-
-
48449095385
-
The Vienna RNA websuite
-
Gruber AR, Lorenz R, Bernhart SH, Neubock R, Hofacker IL, (2008) The Vienna RNA websuite. Nucleic Acids Res 36: W70-74.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Gruber, A.R.1
Lorenz, R.2
Bernhart, S.H.3
Neubock, R.4
Hofacker, I.L.5
-
63
-
-
34249772381
-
Fast Folding and Comparison of RNA Secondary Structures
-
Hofacker IL, Fontana W, Stadler PF, Bonhoeffer S, Tacker M, et al. (1994) Fast Folding and Comparison of RNA Secondary Structures. Monatshefte f Chemie 125: 167-188.
-
(1994)
Monatshefte F Chemie
, vol.125
, pp. 167-188
-
-
Hofacker, I.L.1
Fontana, W.2
Stadler, P.F.3
Bonhoeffer, S.4
Tacker, M.5
-
64
-
-
1842683164
-
In situ synthesis of oligonucleotide microarrays
-
Gao X, Gulari E, Zhou X, (2004) In situ synthesis of oligonucleotide microarrays. Biopolymers 73: 579-596.
-
(2004)
Biopolymers
, vol.73
, pp. 579-596
-
-
Gao, X.1
Gulari, E.2
Zhou, X.3
-
65
-
-
40449123208
-
Microfluidic biochip for nucleic acid and protein analysis
-
Zhu Q, Hong A, Sheng N, Zhang X, Jun K-Y, et al. (2007) Microfluidic biochip for nucleic acid and protein analysis. Methods in Molecular Biology pp. 287-312.
-
(2007)
Methods in Molecular Biology
, pp. 287-312
-
-
Zhu, Q.1
Hong, A.2
Sheng, N.3
Zhang, X.4
Jun, K.-Y.5
-
66
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
67
-
-
0035999977
-
A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
-
Pan W, (2002) A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments. Bioinformatics 18: 546-554.
-
(2002)
Bioinformatics
, vol.18
, pp. 546-554
-
-
Pan, W.1
-
68
-
-
78649903415
-
Age-associated changes in miRNA expression profiles in thymopoiesis
-
Virts EL, Thoman ML, (2010) Age-associated changes in miRNA expression profiles in thymopoiesis. Mech Ageing Dev 131: 743-748.
-
(2010)
Mech Ageing Dev
, vol.131
, pp. 743-748
-
-
Virts, E.L.1
Thoman, M.L.2
|