메뉴 건너뛰기




Volumn 7, Issue 3, 2012, Pages

Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats

Author keywords

[No Author keywords available]

Indexed keywords

REPETITIVE DNA; DIPEPTIDYL PEPTIDASE; DPP6 PROTEIN, HUMAN; ID4 PROTEIN, HUMAN; INHIBITOR OF DIFFERENTIATION PROTEIN; NERVE PROTEIN; POTASSIUM CHANNEL; SIGNAL TRANSDUCING ADAPTOR PROTEIN; SKIP PROTEIN, HUMAN;

EID: 84859083304     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0033213     Document Type: Article
Times cited : (58)

References (71)
  • 1
    • 0032188805 scopus 로고    scopus 로고
    • The importance of diagnostic cytogenetics on outcome in AML: analysis of 1,612 patients entered into the MRC AML 10 trial. The Medical Research Council Adult and Children's Leukaemia Working Parties
    • Grimwade D, Walker H, Oliver F, Wheatley K, Harrison C, et al. (1998) The importance of diagnostic cytogenetics on outcome in AML: analysis of 1,612 patients entered into the MRC AML 10 trial. The Medical Research Council Adult and Children's Leukaemia Working Parties. Blood 92: 2322-2333.
    • (1998) Blood , vol.92 , pp. 2322-2333
    • Grimwade, D.1    Walker, H.2    Oliver, F.3    Wheatley, K.4    Harrison, C.5
  • 2
    • 79952092487 scopus 로고    scopus 로고
    • Molecular genetics of adult acute myeloid leukemia: prognostic and therapeutic implications
    • Marcucci G, Haferlach T, Dohner H, (2011) Molecular genetics of adult acute myeloid leukemia: prognostic and therapeutic implications. J Clin Oncol 29: 475-486.
    • (2011) J Clin Oncol , vol.29 , pp. 475-486
    • Marcucci, G.1    Haferlach, T.2    Dohner, H.3
  • 3
    • 68749120703 scopus 로고    scopus 로고
    • New insights to the MLL recombinome of acute leukemias
    • Meyer C, Kowarz E, Hofmann J, Renneville A, Zuna J, et al. (2009) New insights to the MLL recombinome of acute leukemias. Leukemia 23: 1490-1499.
    • (2009) Leukemia , vol.23 , pp. 1490-1499
    • Meyer, C.1    Kowarz, E.2    Hofmann, J.3    Renneville, A.4    Zuna, J.5
  • 4
    • 77955085750 scopus 로고    scopus 로고
    • Inactivating mutations of the histone methyltransferase gene EZH2 in myeloid disorders
    • Ernst T, Chase AJ, Score J, Hidalgo-Curtis CE, Bryant C, et al. (2010) Inactivating mutations of the histone methyltransferase gene EZH2 in myeloid disorders. Nat Genet 42: 722-726.
    • (2010) Nat Genet , vol.42 , pp. 722-726
    • Ernst, T.1    Chase, A.J.2    Score, J.3    Hidalgo-Curtis, C.E.4    Bryant, C.5
  • 6
    • 79952384705 scopus 로고    scopus 로고
    • Cancer epigenetics reaches mainstream oncology
    • Rodriguez-Paredes M, Esteller M, (2011) Cancer epigenetics reaches mainstream oncology. Nat Med 17: 330-339.
    • (2011) Nat Med , vol.17 , pp. 330-339
    • Rodriguez-Paredes, M.1    Esteller, M.2
  • 7
    • 77249137168 scopus 로고    scopus 로고
    • Principles and challenges of genome-wide DNA methylation analysis
    • Laird PW, (2010) Principles and challenges of genome-wide DNA methylation analysis. Nat Rev Genet 11: 191-203.
    • (2010) Nat Rev Genet , vol.11 , pp. 191-203
    • Laird, P.W.1
  • 8
    • 39749108026 scopus 로고    scopus 로고
    • Next-generation sequencing: the race is on
    • von Bubnoff A, (2008) Next-generation sequencing: the race is on. Cell 132: 721-723.
    • (2008) Cell , vol.132 , pp. 721-723
    • von Bubnoff, A.1
  • 9
    • 77957937011 scopus 로고    scopus 로고
    • Quantitative comparison of genome-wide DNA methylation mapping technologies
    • Bock C, Tomazou EM, Brinkman AB, Muller F, Simmer F, et al. (2010) Quantitative comparison of genome-wide DNA methylation mapping technologies. Nat Biotechnol 28: 1106-1114.
    • (2010) Nat Biotechnol , vol.28 , pp. 1106-1114
    • Bock, C.1    Tomazou, E.M.2    Brinkman, A.B.3    Muller, F.4    Simmer, F.5
  • 10
    • 79960556965 scopus 로고    scopus 로고
    • Epigenome-wide association studies for common human diseases
    • Rakyan VK, Down TA, Balding DJ, Beck S, (2011) Epigenome-wide association studies for common human diseases. Nat Rev Genet 12: 529-541.
    • (2011) Nat Rev Genet , vol.12 , pp. 529-541
    • Rakyan, V.K.1    Down, T.A.2    Balding, D.J.3    Beck, S.4
  • 11
    • 46949098742 scopus 로고    scopus 로고
    • A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
    • Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, et al. (2008) A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat Biotechnol 26: 779-785.
    • (2008) Nat Biotechnol , vol.26 , pp. 779-785
    • Down, T.A.1    Rakyan, V.K.2    Turner, D.J.3    Flicek, P.4    Li, H.5
  • 12
    • 79953296221 scopus 로고    scopus 로고
    • Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors
    • Feber A, Wilson GA, Zhang L, Presneau N, Idowu B, et al. (2011) Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors. Genome Res.
    • (2011) Genome Res
    • Feber, A.1    Wilson, G.A.2    Zhang, L.3    Presneau, N.4    Idowu, B.5
  • 13
    • 78649291183 scopus 로고    scopus 로고
    • Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage
    • Chavez L, Jozefczuk J, Grimm C, Dietrich J, Timmermann B, et al. (2010) Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage. Genome Res 20: 1441-1450.
    • (2010) Genome Res , vol.20 , pp. 1441-1450
    • Chavez, L.1    Jozefczuk, J.2    Grimm, C.3    Dietrich, J.4    Timmermann, B.5
  • 14
    • 0037068353 scopus 로고    scopus 로고
    • DNA methylation in cancer: too much, but also too little
    • Ehrlich M, (2002) DNA methylation in cancer: too much, but also too little. Oncogene 21: 5400-5413.
    • (2002) Oncogene , vol.21 , pp. 5400-5413
    • Ehrlich, M.1
  • 15
    • 39549093550 scopus 로고    scopus 로고
    • An epigenetic role for noncoding RNAs and intragenic DNA methylation
    • Flanagan JM, Wild L, (2007) An epigenetic role for noncoding RNAs and intragenic DNA methylation. Genome Biol 8: 307.
    • (2007) Genome Biol , vol.8 , pp. 307
    • Flanagan, J.M.1    Wild, L.2
  • 16
    • 35948981875 scopus 로고    scopus 로고
    • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters
    • Shen L, Kondo Y, Guo Y, Zhang J, Zhang L, et al. (2007) Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters. PLoS Genet 3: 2023-2036.
    • (2007) PLoS Genet , vol.3 , pp. 2023-2036
    • Shen, L.1    Kondo, Y.2    Guo, Y.3    Zhang, J.4    Zhang, L.5
  • 18
    • 20144366960 scopus 로고    scopus 로고
    • Global assessment of promoter methylation in a mouse model of cancer identifies ID4 as a putative tumor-suppressor gene in human leukemia
    • Yu L, Liu C, Vandeusen J, Becknell B, Dai Z, et al. (2005) Global assessment of promoter methylation in a mouse model of cancer identifies ID4 as a putative tumor-suppressor gene in human leukemia. Nat Genet 37: 265-274.
    • (2005) Nat Genet , vol.37 , pp. 265-274
    • Yu, L.1    Liu, C.2    Vandeusen, J.3    Becknell, B.4    Dai, Z.5
  • 20
    • 70350721794 scopus 로고    scopus 로고
    • Defining the pathogenic role of telomerase mutations in myelodysplastic syndrome and acute myeloid leukemia
    • Kirwan M, Vulliamy T, Marrone A, Walne AJ, Beswick R, et al. (2009) Defining the pathogenic role of telomerase mutations in myelodysplastic syndrome and acute myeloid leukemia. Hum Mutat 30: 1567-1573.
    • (2009) Hum Mutat , vol.30 , pp. 1567-1573
    • Kirwan, M.1    Vulliamy, T.2    Marrone, A.3    Walne, A.J.4    Beswick, R.5
  • 21
    • 33847397814 scopus 로고    scopus 로고
    • Gene expression signatures for tumor progression, tumor subtype, and tumor thickness in laser-microdissected melanoma tissues
    • Jaeger J, Koczan D, Thiesen HJ, Ibrahim SM, Gross G, et al. (2007) Gene expression signatures for tumor progression, tumor subtype, and tumor thickness in laser-microdissected melanoma tissues. Clin Cancer Res 13: 806-815.
    • (2007) Clin Cancer Res , vol.13 , pp. 806-815
    • Jaeger, J.1    Koczan, D.2    Thiesen, H.J.3    Ibrahim, S.M.4    Gross, G.5
  • 22
    • 0037031922 scopus 로고    scopus 로고
    • Cloning and characterization of a protein kinase A anchoring protein (AKAP)-related protein that interacts with and regulates sphingosine kinase 1 activity
    • Lacana E, Maceyka M, Milstien S, Spiegel S, (2002) Cloning and characterization of a protein kinase A anchoring protein (AKAP)-related protein that interacts with and regulates sphingosine kinase 1 activity. J Biol Chem 277: 32947-32953.
    • (2002) J Biol Chem , vol.277 , pp. 32947-32953
    • Lacana, E.1    Maceyka, M.2    Milstien, S.3    Spiegel, S.4
  • 23
    • 77953966511 scopus 로고    scopus 로고
    • Sphingosine 1-phosphate and cancer
    • Pyne NJ, Pyne S, (2010) Sphingosine 1-phosphate and cancer. Nat Rev Cancer 10: 489-503.
    • (2010) Nat Rev Cancer , vol.10 , pp. 489-503
    • Pyne, N.J.1    Pyne, S.2
  • 24
    • 42649089780 scopus 로고    scopus 로고
    • The methylome: approaches for global DNA methylation profiling
    • Beck S, Rakyan VK, (2008) The methylome: approaches for global DNA methylation profiling. Trends Genet 24: 231-237.
    • (2008) Trends Genet , vol.24 , pp. 231-237
    • Beck, S.1    Rakyan, V.K.2
  • 25
    • 79959911384 scopus 로고    scopus 로고
    • Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer
    • Kim JH, Dhanasekaran SM, Prensner JR, Cao X, Robinson D, et al. (2011) Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer. Genome Res 21: 1028-1041.
    • (2011) Genome Res , vol.21 , pp. 1028-1041
    • Kim, J.H.1    Dhanasekaran, S.M.2    Prensner, J.R.3    Cao, X.4    Robinson, D.5
  • 26
    • 59149084538 scopus 로고    scopus 로고
    • The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
    • Irizarry RA, Ladd-Acosta C, Wen B, Wu Z, Montano C, et al. (2009) The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores. Nat Genet 41: 178-186.
    • (2009) Nat Genet , vol.41 , pp. 178-186
    • Irizarry, R.A.1    Ladd-Acosta, C.2    Wen, B.3    Wu, Z.4    Montano, C.5
  • 27
    • 68149108556 scopus 로고    scopus 로고
    • Genome-wide screen of promoter methylation identifies novel markers in melanoma
    • Koga Y, Pelizzola M, Cheng E, Krauthammer M, Sznol M, et al. (2009) Genome-wide screen of promoter methylation identifies novel markers in melanoma. Genome Res 19: 1462-1470.
    • (2009) Genome Res , vol.19 , pp. 1462-1470
    • Koga, Y.1    Pelizzola, M.2    Cheng, E.3    Krauthammer, M.4    Sznol, M.5
  • 28
    • 79952265169 scopus 로고    scopus 로고
    • A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues
    • Pai AA, Bell JT, Marioni JC, Pritchard JK, Gilad Y, (2011) A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues. PLoS Genet 7: e1001316.
    • (2011) PLoS Genet , vol.7
    • Pai, A.A.1    Bell, J.T.2    Marioni, J.C.3    Pritchard, J.K.4    Gilad, Y.5
  • 29
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A, (2002) DNA methylation patterns and epigenetic memory. Genes Dev 16: 6-21.
    • (2002) Genes Dev , vol.16 , pp. 6-21
    • Bird, A.1
  • 30
    • 55449112450 scopus 로고    scopus 로고
    • High-resolution mapping of expression-QTLs yields insight into human gene regulation
    • Veyrieras JB, Kudaravalli S, Kim SY, Dermitzakis ET, Gilad Y, et al. (2008) High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet 4: e1000214.
    • (2008) PLoS Genet , vol.4
    • Veyrieras, J.B.1    Kudaravalli, S.2    Kim, S.Y.3    Dermitzakis, E.T.4    Gilad, Y.5
  • 31
    • 77954504873 scopus 로고    scopus 로고
    • Conserved role of intragenic DNA methylation in regulating alternative promoters
    • Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, et al. (2010) Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature 466: 253-257.
    • (2010) Nature , vol.466 , pp. 253-257
    • Maunakea, A.K.1    Nagarajan, R.P.2    Bilenky, M.3    Ballinger, T.J.4    D'Souza, C.5
  • 32
    • 49149102734 scopus 로고    scopus 로고
    • Alternative promoters influence alternative splicing at the genomic level
    • Xin D, Hu L, Kong X, (2008) Alternative promoters influence alternative splicing at the genomic level. PLoS One 3: e2377.
    • (2008) PLoS One , vol.3
    • Xin, D.1    Hu, L.2    Kong, X.3
  • 33
    • 0035970039 scopus 로고    scopus 로고
    • Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics
    • Virtaneva K, Wright FA, Tanner SM, Yuan B, Lemon WJ, et al. (2001) Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics. Proc Natl Acad Sci U S A 98: 1124-1129.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 1124-1129
    • Virtaneva, K.1    Wright, F.A.2    Tanner, S.M.3    Yuan, B.4    Lemon, W.J.5
  • 35
    • 0037732933 scopus 로고    scopus 로고
    • Genome-wide analysis of acute myeloid leukemia with normal karyotype reveals a unique pattern of homeobox gene expression distinct from those with translocation-mediated fusion events
    • Debernardi S, Lillington DM, Chaplin T, Tomlinson S, Amess J, et al. (2003) Genome-wide analysis of acute myeloid leukemia with normal karyotype reveals a unique pattern of homeobox gene expression distinct from those with translocation-mediated fusion events. Genes Chromosomes Cancer 37: 149-158.
    • (2003) Genes Chromosomes Cancer , vol.37 , pp. 149-158
    • Debernardi, S.1    Lillington, D.M.2    Chaplin, T.3    Tomlinson, S.4    Amess, J.5
  • 37
    • 77957370748 scopus 로고    scopus 로고
    • Genome-wide DNA methylation profiling of chronic lymphocytic leukemia allows identification of epigenetically repressed molecular pathways with clinical impact
    • Tong WG, Wierda WG, Lin E, Kuang SQ, Bekele BN, et al. (2010) Genome-wide DNA methylation profiling of chronic lymphocytic leukemia allows identification of epigenetically repressed molecular pathways with clinical impact. Epigenetics 5: 499-508.
    • (2010) Epigenetics , vol.5 , pp. 499-508
    • Tong, W.G.1    Wierda, W.G.2    Lin, E.3    Kuang, S.Q.4    Bekele, B.N.5
  • 38
    • 73649110641 scopus 로고    scopus 로고
    • DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia
    • Figueroa ME, Lugthart S, Li Y, Erpelinck-Verschueren C, Deng X, et al. (2010) DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia. Cancer Cell 17: 13-27.
    • (2010) Cancer Cell , vol.17 , pp. 13-27
    • Figueroa, M.E.1    Lugthart, S.2    Li, Y.3    Erpelinck-Verschueren, C.4    Deng, X.5
  • 39
    • 33746756014 scopus 로고    scopus 로고
    • Comparative isoschizomer profiling of cytosine methylation: the HELP assay
    • Khulan B, Thompson RF, Ye K, Fazzari MJ, Suzuki M, et al. (2006) Comparative isoschizomer profiling of cytosine methylation: the HELP assay. Genome Res 16: 1046-1055.
    • (2006) Genome Res , vol.16 , pp. 1046-1055
    • Khulan, B.1    Thompson, R.F.2    Ye, K.3    Fazzari, M.J.4    Suzuki, M.5
  • 40
    • 77951745863 scopus 로고    scopus 로고
    • Sphingosine kinase interacting protein is an A-kinase anchoring protein specific for type I cAMP-dependent protein kinase
    • Kovanich D, van der Heyden MA, Aye TT, van Veen TA, Heck AJ, et al. (2010) Sphingosine kinase interacting protein is an A-kinase anchoring protein specific for type I cAMP-dependent protein kinase. Chembiochem 11: 963-971.
    • (2010) Chembiochem , vol.11 , pp. 963-971
    • Kovanich, D.1    van der Heyden, M.A.2    Aye, T.T.3    van Veen, T.A.4    Heck, A.J.5
  • 42
    • 77955016925 scopus 로고    scopus 로고
    • Runx regulation of sphingolipid metabolism and survival signaling
    • Kilbey A, Terry A, Jenkins A, Borland G, Zhang Q, et al. (2010) Runx regulation of sphingolipid metabolism and survival signaling. Cancer Res 70: 5860-5869.
    • (2010) Cancer Res , vol.70 , pp. 5860-5869
    • Kilbey, A.1    Terry, A.2    Jenkins, A.3    Borland, G.4    Zhang, Q.5
  • 43
    • 77957970301 scopus 로고    scopus 로고
    • Epigenetic modifications and human disease
    • Portela A, Esteller M, (2010) Epigenetic modifications and human disease. Nat Biotechnol 28: 1057-1068.
    • (2010) Nat Biotechnol , vol.28 , pp. 1057-1068
    • Portela, A.1    Esteller, M.2
  • 44
    • 67650067284 scopus 로고    scopus 로고
    • Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer
    • Choi SH, Worswick S, Byun HM, Shear T, Soussa JC, et al. (2009) Changes in DNA methylation of tandem DNA repeats are different from interspersed repeats in cancer. Int J Cancer 125: 723-729.
    • (2009) Int J Cancer , vol.125 , pp. 723-729
    • Choi, S.H.1    Worswick, S.2    Byun, H.M.3    Shear, T.4    Soussa, J.C.5
  • 45
    • 24744471011 scopus 로고    scopus 로고
    • Causes and consequences of DNA hypomethylation in human cancer
    • Hoffmann MJ, Schulz WA, (2005) Causes and consequences of DNA hypomethylation in human cancer. Biochem Cell Biol 83: 296-321.
    • (2005) Biochem Cell Biol , vol.83 , pp. 296-321
    • Hoffmann, M.J.1    Schulz, W.A.2
  • 46
    • 27944504788 scopus 로고    scopus 로고
    • Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia
    • Roman-Gomez J, Jimenez-Velasco A, Agirre X, Cervantes F, Sanchez J, et al. (2005) Promoter hypomethylation of the LINE-1 retrotransposable elements activates sense/antisense transcription and marks the progression of chronic myeloid leukemia. Oncogene 24: 7213-7223.
    • (2005) Oncogene , vol.24 , pp. 7213-7223
    • Roman-Gomez, J.1    Jimenez-Velasco, A.2    Agirre, X.3    Cervantes, F.4    Sanchez, J.5
  • 47
    • 55249096744 scopus 로고    scopus 로고
    • Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes
    • Lee JY, Ji Z, Tian B, (2008) Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes. Nucleic Acids Res 36: 5581-5590.
    • (2008) Nucleic Acids Res , vol.36 , pp. 5581-5590
    • Lee, J.Y.1    Ji, Z.2    Tian, B.3
  • 48
    • 43249128135 scopus 로고    scopus 로고
    • Epigenetic activation of genomic retrotransposons
    • Mansour A, (2007) Epigenetic activation of genomic retrotransposons. Journal of Cell and Molecular Biology 6: 99-107.
    • (2007) Journal of Cell and Molecular Biology , vol.6 , pp. 99-107
    • Mansour, A.1
  • 49
    • 77952414230 scopus 로고    scopus 로고
    • Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer
    • Wolff EM, Byun HM, Han HF, Sharma S, Nichols PW, et al. (2010) Hypomethylation of a LINE-1 promoter activates an alternate transcript of the MET oncogene in bladders with cancer. PLoS Genet 6: e1000917.
    • (2010) PLoS Genet , vol.6
    • Wolff, E.M.1    Byun, H.M.2    Han, H.F.3    Sharma, S.4    Nichols, P.W.5
  • 50
    • 33847082188 scopus 로고    scopus 로고
    • DNA methylation of tumor suppressor genes in clinical remission predicts the relapse risk in acute myeloid leukemia
    • Agrawal S, Unterberg M, Koschmieder S, zur Stadt U, Brunnberg U, et al. (2007) DNA methylation of tumor suppressor genes in clinical remission predicts the relapse risk in acute myeloid leukemia. Cancer Res 67: 1370-1377.
    • (2007) Cancer Res , vol.67 , pp. 1370-1377
    • Agrawal, S.1    Unterberg, M.2    Koschmieder, S.3    zur Stadt, U.4    Brunnberg, U.5
  • 51
    • 77449159028 scopus 로고    scopus 로고
    • Diagnosis and management of acute myeloid leukemia in adults: recommendations from an international expert panel, on behalf of the European LeukemiaNet
    • Dohner H, Estey EH, Amadori S, Appelbaum FR, Buchner T, et al. (2010) Diagnosis and management of acute myeloid leukemia in adults: recommendations from an international expert panel, on behalf of the European LeukemiaNet. Blood 115: 453-474.
    • (2010) Blood , vol.115 , pp. 453-474
    • Dohner, H.1    Estey, E.H.2    Amadori, S.3    Appelbaum, F.R.4    Buchner, T.5
  • 52
    • 10244263491 scopus 로고    scopus 로고
    • A novel human leukaemic cell line, CTS, has a t(6;11) chromosomal translocation and characteristics of pluripotent stem cells
    • Kakuda H, Sato T, Hayashi Y, Enomoto Y, Takayama J, et al. (1996) A novel human leukaemic cell line, CTS, has a t(6;11) chromosomal translocation and characteristics of pluripotent stem cells. Br J Haematol 95: 306-318.
    • (1996) Br J Haematol , vol.95 , pp. 306-318
    • Kakuda, H.1    Sato, T.2    Hayashi, Y.3    Enomoto, Y.4    Takayama, J.5
  • 53
    • 0025755556 scopus 로고
    • Characterization of phospholipase A2 in monocytic cell lines. Functional and biochemical aspects of membrane association
    • Rehfeldt W, Hass R, Goppelt-Struebe M, (1991) Characterization of phospholipase A2 in monocytic cell lines. Functional and biochemical aspects of membrane association. Biochem J 276 (Pt 3): 631-636.
    • (1991) Biochem J , vol.276 , Issue.Pt 3 , pp. 631-636
    • Rehfeldt, W.1    Hass, R.2    Goppelt-Struebe, M.3
  • 54
    • 0020399383 scopus 로고
    • A novel monocytoid cultured cell line, P31/Fujioka, derived from acute monoblastic leukemia
    • Hirose M, Minato K, Tobinai K, Shimoyama M, Watanabe S, et al. (1982) A novel monocytoid cultured cell line, P31/Fujioka, derived from acute monoblastic leukemia. Gann 73: 735-741.
    • (1982) Gann , vol.73 , pp. 735-741
    • Hirose, M.1    Minato, K.2    Tobinai, K.3    Shimoyama, M.4    Watanabe, S.5
  • 55
    • 0028195019 scopus 로고
    • Chemically selected subclones of the CEM cell line demonstrate resistance to HIV-1 infection resulting from a selective loss of NF-kappa B DNA binding proteins
    • Qian J, Bours V, Manischewitz J, Blackburn R, Siebenlist U, et al. (1994) Chemically selected subclones of the CEM cell line demonstrate resistance to HIV-1 infection resulting from a selective loss of NF-kappa B DNA binding proteins. J Immunol 152: 4183-4191.
    • (1994) J Immunol , vol.152 , pp. 4183-4191
    • Qian, J.1    Bours, V.2    Manischewitz, J.3    Blackburn, R.4    Siebenlist, U.5
  • 56
    • 0027409775 scopus 로고
    • Characterization of a novel Hodgkin cell line, HD-MyZ, with myelomonocytic features mimicking Hodgkin's disease in severe combined immunodeficient mice
    • Bargou RC, Mapara MY, Zugck C, Daniel PT, Pawlita M, et al. (1993) Characterization of a novel Hodgkin cell line, HD-MyZ, with myelomonocytic features mimicking Hodgkin's disease in severe combined immunodeficient mice. J Exp Med 177: 1257-1268.
    • (1993) J Exp Med , vol.177 , pp. 1257-1268
    • Bargou, R.C.1    Mapara, M.Y.2    Zugck, C.3    Daniel, P.T.4    Pawlita, M.5
  • 57
    • 0021336291 scopus 로고
    • Phenotypic analysis of established diffuse histiocytic lymphoma cell lines utilizing monoclonal antibodies and cytochemical techniques
    • Winter JN, Variakojis D, Epstein AL, (1984) Phenotypic analysis of established diffuse histiocytic lymphoma cell lines utilizing monoclonal antibodies and cytochemical techniques. Blood 63: 140-146.
    • (1984) Blood , vol.63 , pp. 140-146
    • Winter, J.N.1    Variakojis, D.2    Epstein, A.L.3
  • 58
    • 0036993573 scopus 로고    scopus 로고
    • Melanoma development and progression: a conspiracy between tumor and host
    • Hsu MY, Meier F, Herlyn M, (2002) Melanoma development and progression: a conspiracy between tumor and host. Differentiation 70: 522-536.
    • (2002) Differentiation , vol.70 , pp. 522-536
    • Hsu, M.Y.1    Meier, F.2    Herlyn, M.3
  • 59
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, et al. (2005) Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 37: 853-862.
    • (2005) Nat Genet , vol.37 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5
  • 60
    • 64149123778 scopus 로고    scopus 로고
    • Next-generation sequencing: from basic research to diagnostics
    • Voelkerding KV, Dames SA, Durtschi JD, (2009) Next-generation sequencing: from basic research to diagnostics. Clin Chem 55: 641-658.
    • (2009) Clin Chem , vol.55 , pp. 641-658
    • Voelkerding, K.V.1    Dames, S.A.2    Durtschi, J.D.3
  • 61
    • 68549098191 scopus 로고    scopus 로고
    • Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA
    • Holt KE, Teo YY, Li H, Nair S, Dougan G, et al. (2009) Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA. Bioinformatics 25: 2074-2075.
    • (2009) Bioinformatics , vol.25 , pp. 2074-2075
    • Holt, K.E.1    Teo, Y.Y.2    Li, H.3    Nair, S.4    Dougan, G.5
  • 62
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 63
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 64
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3    Bolstad, B.4    Dettling, M.5
  • 65
    • 77955439834 scopus 로고    scopus 로고
    • Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
    • Schulte JH, Marschall T, Martin M, Rosenstiel P, Mestdagh P, et al. (2010) Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma. Nucleic Acids Res 38: 5919-5928.
    • (2010) Nucleic Acids Res , vol.38 , pp. 5919-5928
    • Schulte, J.H.1    Marschall, T.2    Martin, M.3    Rosenstiel, P.4    Mestdagh, P.5
  • 67
    • 84944178665 scopus 로고
    • Hierarchical grouping to optimize an objective function
    • Ward JH, (1963) Hierarchical grouping to optimize an objective function. Journal of American Statistical Association 58: 236-244.
    • (1963) Journal of American Statistical Association , vol.58 , pp. 236-244
    • Ward, J.H.1
  • 68
    • 38449113853 scopus 로고    scopus 로고
    • DNA methylation analysis by pyrosequencing
    • Tost J, Gut IG, (2007) DNA methylation analysis by pyrosequencing. Nat Protoc 2: 2265-2275.
    • (2007) Nat Protoc , vol.2 , pp. 2265-2275
    • Tost, J.1    Gut, I.G.2
  • 69
    • 77958548605 scopus 로고    scopus 로고
    • Array-based DNA methylation profiling for breast cancer subtype discrimination
    • Van der Auwera I, Yu W, Suo L, Van Neste L, van Dam P, et al. (2010) Array-based DNA methylation profiling for breast cancer subtype discrimination. PLoS One 5: e12616.
    • (2010) PLoS One , vol.5
    • van der Auwera, I.1    Yu, W.2    Suo, L.3    Van Neste, L.4    van Dam, P.5
  • 70
    • 33846561627 scopus 로고    scopus 로고
    • Effect of various normalization methods on Applied Biosystems expression array system data
    • Barbacioru CC, Wang Y, Canales RD, Sun YA, Keys DN, et al. (2006) Effect of various normalization methods on Applied Biosystems expression array system data. BMC Bioinformatics 7: 533.
    • (2006) BMC Bioinformatics , vol.7 , pp. 533
    • Barbacioru, C.C.1    Wang, Y.2    Canales, R.D.3    Sun, Y.A.4    Keys, D.N.5
  • 71
    • 77957891990 scopus 로고    scopus 로고
    • In vitro transformation of primary human CD34+ cells by AML fusion oncogenes: early gene expression profiling reveals possible drug target in AML
    • Abdul-Nabi AM, Yassin ER, Varghese N, Deshmukh H, Yaseen NR, (2010) In vitro transformation of primary human CD34+ cells by AML fusion oncogenes: early gene expression profiling reveals possible drug target in AML. PLoS One 5: e12464.
    • (2010) PLoS One , vol.5
    • Abdul-Nabi, A.M.1    Yassin, E.R.2    Varghese, N.3    Deshmukh, H.4    Yaseen, N.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.