-
1
-
-
0035983615
-
Arabidopsis map-based cloning in the post-genome era
-
10.1104/pp.003533, 1540230, 12068090
-
Jander G, Norris SR, Rounsley SD, Bush DF, Levin IM, Last RL. Arabidopsis map-based cloning in the post-genome era. Plant Physiol 2002, 129(2):440-450. 10.1104/pp.003533, 1540230, 12068090.
-
(2002)
Plant Physiol
, vol.129
, Issue.2
, pp. 440-450
-
-
Jander, G.1
Norris, S.R.2
Rounsley, S.D.3
Bush, D.F.4
Levin, I.M.5
Last, R.L.6
-
2
-
-
0036847621
-
A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions
-
10.1105/tpc.006494, 152723, 12417697
-
Cheng WH, Endo A, Zhou L, Penney J, Chen HC, Arroyo A, Leon P, Nambara E, Asami T, Seo M, et al. A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signaling and abscisic acid biosynthesis and functions. Plant Cell 2002, 14(11):2723-2743. 10.1105/tpc.006494, 152723, 12417697.
-
(2002)
Plant Cell
, vol.14
, Issue.11
, pp. 2723-2743
-
-
Cheng, W.H.1
Endo, A.2
Zhou, L.3
Penney, J.4
Chen, H.C.5
Arroyo, A.6
Leon, P.7
Nambara, E.8
Asami, T.9
Seo, M.10
-
3
-
-
63349106221
-
Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function
-
Knight H, Mugford Nee Garton SG, Ulker B, Gao D, Thorlby G, Knight MR. Identification of SFR6, a key component in cold acclimation acting post-translationally on CBF function. Plant J 2008, 58:97-108.
-
(2008)
Plant J
, vol.58
, pp. 97-108
-
-
Knight, H.1
Mugford Nee Garton, S.G.2
Ulker, B.3
Gao, D.4
Thorlby, G.5
Knight, M.R.6
-
4
-
-
0037013865
-
LOS2, a genetic locus required for cold-responsive gene transcription encodes a bi-functional enolase
-
10.1093/emboj/21.11.2692, 126021, 12032082
-
Lee H, Guo Y, Ohta M, Xiong L, Stevenson B, Zhu JK. LOS2, a genetic locus required for cold-responsive gene transcription encodes a bi-functional enolase. EMBO J 2002, 21(11):2692-2702. 10.1093/emboj/21.11.2692, 126021, 12032082.
-
(2002)
EMBO J
, vol.21
, Issue.11
, pp. 2692-2702
-
-
Lee, H.1
Guo, Y.2
Ohta, M.3
Xiong, L.4
Stevenson, B.5
Zhu, J.K.6
-
5
-
-
79955726394
-
Fast-forward genetics enabled by new sequencing technologies
-
10.1016/j.tplants.2011.02.006, 21439889
-
Schneeberger K, Weigel D. Fast-forward genetics enabled by new sequencing technologies. Trends Plant Sci 2011, 16(5):282-288. 10.1016/j.tplants.2011.02.006, 21439889.
-
(2011)
Trends Plant Sci
, vol.16
, Issue.5
, pp. 282-288
-
-
Schneeberger, K.1
Weigel, D.2
-
6
-
-
78751654713
-
A strategy for direct mapping and identification of mutations by whole-genome sequencing
-
10.1534/genetics.110.119230, 2940307, 20610404
-
Zuryn S, Le Gras S, Jamet K, Jarriault S. A strategy for direct mapping and identification of mutations by whole-genome sequencing. Genetics 2010, 186(1):427-430. 10.1534/genetics.110.119230, 2940307, 20610404.
-
(2010)
Genetics
, vol.186
, Issue.1
, pp. 427-430
-
-
Zuryn, S.1
Le Gras, S.2
Jamet, K.3
Jarriault, S.4
-
7
-
-
80051671698
-
Next-generation mapping of arabidopsis genes
-
10.1111/j.1365-313X.2011.04619.x, 21518053
-
Austin RS, Vidaurre D, Stamatiou G, Breit R, Provart NJ, Bonetta D, Zhang J, Fung P, Gong Y, Wang PW, et al. Next-generation mapping of arabidopsis genes. Plant J 2011, 67:715-725. 10.1111/j.1365-313X.2011.04619.x, 21518053.
-
(2011)
Plant J
, vol.67
, pp. 715-725
-
-
Austin, R.S.1
Vidaurre, D.2
Stamatiou, G.3
Breit, R.4
Provart, N.J.5
Bonetta, D.6
Zhang, J.7
Fung, P.8
Gong, Y.9
Wang, P.W.10
-
8
-
-
76249087711
-
Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing
-
10.1073/pnas.0913203107, 2806713, 20018656
-
Cuperus JT, Montgomery TA, Fahlgren N, Burke RT, Townsend T, Sullivan CM, Carrington JC. Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing. Proc Natl Acad Sci USA 2010, 107(1):466-471. 10.1073/pnas.0913203107, 2806713, 20018656.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.1
, pp. 466-471
-
-
Cuperus, J.T.1
Montgomery, T.A.2
Fahlgren, N.3
Burke, R.T.4
Townsend, T.5
Sullivan, C.M.6
Carrington, J.C.7
-
9
-
-
79953862774
-
Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing
-
10.1093/pcp/pcr029, 21398646
-
Uchida N, Sakamoto T, Kurata T, Tasaka M. Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing. Plant Cell Physiol 2011, 52(4):716-722. 10.1093/pcp/pcr029, 21398646.
-
(2011)
Plant Cell Physiol
, vol.52
, Issue.4
, pp. 716-722
-
-
Uchida, N.1
Sakamoto, T.2
Kurata, T.3
Tasaka, M.4
-
10
-
-
79551716519
-
Nitrogen signalling in Arabidopsis: how to obtain insights into a complex signalling network
-
10.1093/jxb/erq375, 21118821
-
Castaings L, Marchive C, Meyer C, Krapp A. Nitrogen signalling in Arabidopsis: how to obtain insights into a complex signalling network. J Exp Bot 2011, 62(4):1391-1397. 10.1093/jxb/erq375, 21118821.
-
(2011)
J Exp Bot
, vol.62
, Issue.4
, pp. 1391-1397
-
-
Castaings, L.1
Marchive, C.2
Meyer, C.3
Krapp, A.4
-
11
-
-
77955891592
-
Nitrate signaling: adaptation to fluctuating environments
-
Krouk G, Crawford NM, Coruzzi GM, Tsay YF. Nitrate signaling: adaptation to fluctuating environments. Curr Opin Plant Biol 2010, 13(3):266-273.
-
(2010)
Curr Opin Plant Biol
, vol.13
, Issue.3
, pp. 266-273
-
-
Krouk, G.1
Crawford, N.M.2
Coruzzi, G.M.3
Tsay, Y.F.4
-
12
-
-
79955595044
-
Integration of nitrogen and potassium signaling
-
10.1146/annurev-arplant-042110-103837, 21495843
-
Tsay YF, Ho CH, Chen HY, Lin SH. Integration of nitrogen and potassium signaling. Annu Rev Plant Biol 2011, 62:207-226. 10.1146/annurev-arplant-042110-103837, 21495843.
-
(2011)
Annu Rev Plant Biol
, vol.62
, pp. 207-226
-
-
Tsay, Y.F.1
Ho, C.H.2
Chen, H.Y.3
Lin, S.H.4
-
13
-
-
79952197872
-
Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana
-
10.1002/wsbm.87, 2951390, 20890965
-
Vidal EA, Tamayo KP, Gutierrez RA. Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana. Wiley Interdiscip Rev Syst Biol Med 2010, 2(6):683-693. 10.1002/wsbm.87, 2951390, 20890965.
-
(2010)
Wiley Interdiscip Rev Syst Biol Med
, vol.2
, Issue.6
, pp. 683-693
-
-
Vidal, E.A.1
Tamayo, K.P.2
Gutierrez, R.A.3
-
14
-
-
16544369956
-
Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis
-
10.1104/pp.104.044610, 523318, 15333754
-
Wang R, Tischner R, Gutierrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol 2004, 136(1):2512-2522. 10.1104/pp.104.044610, 523318, 15333754.
-
(2004)
Plant Physiol
, vol.136
, Issue.1
, pp. 2512-2522
-
-
Wang, R.1
Tischner, R.2
Gutierrez, R.A.3
Hoffman, M.4
Xing, X.5
Chen, M.6
Coruzzi, G.7
Crawford, N.M.8
-
15
-
-
0142214756
-
Forward genetics and map-based cloning approaches
-
10.1016/j.tplants.2003.09.002, 14557045
-
Peters JL, Cnudde F, Gerats T. Forward genetics and map-based cloning approaches. Trends Plant Sci 2003, 8(10):484-491. 10.1016/j.tplants.2003.09.002, 14557045.
-
(2003)
Trends Plant Sci
, vol.8
, Issue.10
, pp. 484-491
-
-
Peters, J.L.1
Cnudde, F.2
Gerats, T.3
-
16
-
-
77954489376
-
Manipulation of FASTQ data with Galaxy
-
10.1093/bioinformatics/btq281, 2894519, 20562416
-
Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A. Manipulation of FASTQ data with Galaxy. Bioinformatics 2010, 26(14):1783-1785. 10.1093/bioinformatics/btq281, 2894519, 20562416.
-
(2010)
Bioinformatics
, vol.26
, Issue.14
, pp. 1783-1785
-
-
Blankenberg, D.1
Gordon, A.2
Von Kuster, G.3
Coraor, N.4
Taylor, J.5
Nekrutenko, A.6
-
17
-
-
25844449770
-
Galaxy: a platform for interactive large-scale genome analysis
-
10.1101/gr.4086505, 1240089, 16169926
-
Giardine B, Riemer C, Hardison RC, Burhans R, Elnitski L, Shah P, Zhang Y, Blankenberg D, Albert I, Taylor J, et al. Galaxy: a platform for interactive large-scale genome analysis. Genome Res 2005, 15(10):1451-1455. 10.1101/gr.4086505, 1240089, 16169926.
-
(2005)
Genome Res
, vol.15
, Issue.10
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
-
18
-
-
77955801615
-
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
10.1186/gb-2010-11-8-r86, 2945788, 20738864
-
Goecks J, Nekrutenko A, Taylor J. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 2010, 11(8):R86. 10.1186/gb-2010-11-8-r86, 2945788, 20738864.
-
(2010)
Genome Biol
, vol.11
, Issue.8
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
-
19
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10(3):R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
20
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
10.1093/bioinformatics/btp352, 2723002, 19505943
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R. The sequence alignment/map format and SAMtools. Bioinformatics 2009, 25(16):2078-2079. 10.1093/bioinformatics/btp352, 2723002, 19505943.
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
21
-
-
77950343659
-
Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis
-
10.1105/tpc.109.068320, 2828701, 20061553
-
Rosado A, Sohn EJ, Drakakaki G, Pan S, Swidergal A, Xiong Y, Kang BH, Bressan RA, Raikhel NV. Auxin-mediated ribosomal biogenesis regulates vacuolar trafficking in Arabidopsis. Plant Cell 2010, 22(1):143-158. 10.1105/tpc.109.068320, 2828701, 20061553.
-
(2010)
Plant Cell
, vol.22
, Issue.1
, pp. 143-158
-
-
Rosado, A.1
Sohn, E.J.2
Drakakaki, G.3
Pan, S.4
Swidergal, A.5
Xiong, Y.6
Kang, B.H.7
Bressan, R.A.8
Raikhel, N.V.9
-
22
-
-
33749259787
-
An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response
-
10.1111/j.1365-313X.2006.02873.x, 16995899
-
Myouga F, Motohashi R, Kuromori T, Nagata N, Shinozaki K. An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response. Plant J 2006, 48(2):249-260. 10.1111/j.1365-313X.2006.02873.x, 16995899.
-
(2006)
Plant J
, vol.48
, Issue.2
, pp. 249-260
-
-
Myouga, F.1
Motohashi, R.2
Kuromori, T.3
Nagata, N.4
Shinozaki, K.5
-
23
-
-
0036678452
-
C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development
-
10.1073/pnas.112276199, 125069, 12149434
-
Koiwa H, Barb AW, Xiong L, Li F, McCully MG, Lee BH, Sokolchik I, Zhu J, Gong Z, Reddy M, et al. C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development. Proc Natl Acad Sci USA 2002, 99(16):10893-10898. 10.1073/pnas.112276199, 125069, 12149434.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.16
, pp. 10893-10898
-
-
Koiwa, H.1
Barb, A.W.2
Xiong, L.3
Li, F.4
McCully, M.G.5
Lee, B.H.6
Sokolchik, I.7
Zhu, J.8
Gong, Z.9
Reddy, M.10
-
24
-
-
56149096455
-
Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
-
10.1093/nar/gkn502, 2577356, 18753151
-
Cronn R, Liston A, Parks M, Gernandt DS, Shen R, Mockler T. Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology. Nucleic Acids Res 2008, 36(19):e122. 10.1093/nar/gkn502, 2577356, 18753151.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.19
-
-
Cronn, R.1
Liston, A.2
Parks, M.3
Gernandt, D.S.4
Shen, R.5
Mockler, T.6
-
25
-
-
77449121614
-
Target-enrichment strategies for next-generation sequencing
-
10.1038/nmeth.1419, 20111037
-
Mamanova L, Coffey AJ, Scott CE, Kozarewa I, Turner EH, Kumar A, Howard E, Shendure J, Turner DJ. Target-enrichment strategies for next-generation sequencing. Nat Methods 2010, 7(2):111-118. 10.1038/nmeth.1419, 20111037.
-
(2010)
Nat Methods
, vol.7
, Issue.2
, pp. 111-118
-
-
Mamanova, L.1
Coffey, A.J.2
Scott, C.E.3
Kozarewa, I.4
Turner, E.H.5
Kumar, A.6
Howard, E.7
Shendure, J.8
Turner, D.J.9
-
26
-
-
0032447801
-
Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
10.1046/j.1365-313x.1998.00343.x, 10069079
-
Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 1998, 16(6):735-743. 10.1046/j.1365-313x.1998.00343.x, 10069079.
-
(1998)
Plant J
, vol.16
, Issue.6
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
27
-
-
0033133465
-
CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake
-
144217, 10330471
-
Liu KH, Huang CY, Tsay YF. CHL1 is a dual-affinity nitrate transporter of Arabidopsis involved in multiple phases of nitrate uptake. Plant Cell 1999, 11(5):865-874. 144217, 10330471.
-
(1999)
Plant Cell
, vol.11
, Issue.5
, pp. 865-874
-
-
Liu, K.H.1
Huang, C.Y.2
Tsay, Y.F.3
-
28
-
-
34447099171
-
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
-
10.1038/nprot.2007.199, 17585298
-
Yoo SD, Cho YH, Sheen J. Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc 2007, 2(7):1565-1572. 10.1038/nprot.2007.199, 17585298.
-
(2007)
Nat Protoc
, vol.2
, Issue.7
, pp. 1565-1572
-
-
Yoo, S.D.1
Cho, Y.H.2
Sheen, J.3
-
29
-
-
0033167172
-
A mini binary vector series for plant transformation
-
10.1023/A:1006201910593, 10480394
-
Xiang C, Han P, Lutziger I, Wang K, Oliver DJ. A mini binary vector series for plant transformation. Plant Mol Biol 1999, 40(4):711-717. 10.1023/A:1006201910593, 10480394.
-
(1999)
Plant Mol Biol
, vol.40
, Issue.4
, pp. 711-717
-
-
Xiang, C.1
Han, P.2
Lutziger, I.3
Wang, K.4
Oliver, D.J.5
-
30
-
-
0042768158
-
Genome-wide insertional mutagenesis of Arabidopsis thaliana
-
10.1126/science.1086391, 12893945
-
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, Shinn P, Stevenson DK, Zimmerman J, Barajas P, Cheuk R, et al. Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 2003, 301(5633):653-657. 10.1126/science.1086391, 12893945.
-
(2003)
Science
, vol.301
, Issue.5633
, pp. 653-657
-
-
Alonso, J.M.1
Stepanova, A.N.2
Leisse, T.J.3
Kim, C.J.4
Chen, H.5
Shinn, P.6
Stevenson, D.K.7
Zimmerman, J.8
Barajas, P.9
Cheuk, R.10
-
31
-
-
0019321718
-
Rapid isolation of high molecular weight plant DNA
-
10.1093/nar/8.19.4321, 324241, 7433111
-
Murray MG, Thompson WF. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 1980, 8(19):4321-4325. 10.1093/nar/8.19.4321, 324241, 7433111.
-
(1980)
Nucleic Acids Res
, vol.8
, Issue.19
, pp. 4321-4325
-
-
Murray, M.G.1
Thompson, W.F.2
-
32
-
-
77949512406
-
Tablet-next generation sequence assembly visualization
-
10.1093/bioinformatics/btp666, 2815658, 19965881
-
Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. Tablet-next generation sequence assembly visualization. Bioinformatics 2010, 26(3):401-402. 10.1093/bioinformatics/btp666, 2815658, 19965881.
-
(2010)
Bioinformatics
, vol.26
, Issue.3
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
|