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Volumn 6, Issue 1, 2012, Pages 84-93

Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium

Author keywords

Gliding motility; Globin coupled sensors; Predatory; Rhapidosomes; RsbR; Saprospira grandis

Indexed keywords

AMINO ACID; GLOBIN; PEPTIDASE;

EID: 84859010993     PISSN: 19443277     EISSN: None     Source Type: Journal    
DOI: 10.4056/sigs.2445005     Document Type: Article
Times cited : (29)

References (44)
  • 1
    • 0030687912 scopus 로고    scopus 로고
    • Saprospira grandis: A flexibacterium that can catch bacterial prey by Ixotrophy
    • PubMed
    • Lewin RA. Saprospira grandis: A flexibacterium that can catch bacterial prey by Ixotrophy. Microb Ecol 1997; 34:232-236.PubMed http://dx.doi.org/10.1007/s002489900052
    • (1997) Microb Ecol , vol.34 , pp. 232-236
    • Lewin, R.A.1
  • 2
    • 0015313713 scopus 로고
    • Growth and nutrition of Saprospira grandis Gross (Flexibacterales)
    • PubMed
    • Lewin FA. Growth and nutrition of Saprospira grandis Gross (Flexibacterales). Can J Microbiol 1972; 18:361-365.PubMed http://dx.doi.org/10.1139/m72-055
    • (1972) Can J Microbiol , vol.18 , pp. 361-365
    • Lewin, F.A.1
  • 3
    • 0442304922 scopus 로고
    • Über freilebende Spironemaceen
    • Gross J. Über freilebende Spironemaceen. Mitt. Zool. Stat. Neapel 1911; 20:188-203.
    • (1911) Mitt. Zool. Stat. Neapel , vol.20 , pp. 188-203
    • Gross, J.1
  • 4
    • 0008506085 scopus 로고
    • Isolation and some physiological features of Saprospira thermalis
    • PubMed
    • Lewin RA. Isolation and some physiological features of Saprospira thermalis. Can J Microbiol 1965; 11:77-86.PubMed http://dx.doi.org/10.1139/m65-010
    • (1965) Can J Microbiol , vol.11 , pp. 77-86
    • Lewin, R.A.1
  • 5
    • 0038826515 scopus 로고
    • Freshwater Species of Saprospira
    • PubMed
    • Lewin RA. Freshwater Species of Saprospira. Can J Microbiol 1965; 11:135-139.PubMed http://dx.doi.org/10.1139/m65-019
    • (1965) Can J Microbiol , vol.11 , pp. 135-139
    • Lewin, R.A.1
  • 6
    • 0014585406 scopus 로고
    • Isolation, cultivation and characterization of flexibacteria
    • PubMed
    • Lewin RA, Lounsbery DM. Isolation, cultivation and characterization of flexibacteria. J Gen Microbiol 1969; 58:145-170.PubMed
    • (1969) J Gen Microbiol , vol.58 , pp. 145-170
    • Lewin, R.A.1    Lounsbery, D.M.2
  • 7
    • 0014799001 scopus 로고
    • Saprospira toviformis nov. spec. (Flexibacterales) from a New Zealand sea-shore
    • PubMed
    • Lewin RA, Mandel M. Saprospira toviformis nov. spec. (Flexibacterales) from a New Zealand sea-shore. Can J Microbiol 1970; 16:507-510.PubMed http://dx.doi.org/10.1139/m70-085
    • (1970) Can J Microbiol , vol.16 , pp. 507-510
    • Lewin, R.A.1    Mandel, M.2
  • 8
    • 84859032390 scopus 로고    scopus 로고
    • The Genus Saprospira
    • Dworkin M, Falkow, S., Rosenberg, E., Schleifer, K-H., Stackebrandt, E., editor, 3rd ed, New York, NY: Springer
    • Reichenbach H. The Genus Saprospira. In: Dworkin M, Falkow, S., Rosenberg, E., Schleifer, K-H., Stackebrandt, E., editor. The Prokaryotes. 3rd ed. Volume 3. New York, NY: Springer; 2006. p 591-601.
    • (2006) The Prokaryotes , vol.3 , pp. 591-601
    • Reichenbach, H.1
  • 9
    • 42049089111 scopus 로고    scopus 로고
    • Identification and ecophysiological characterization of epiphytic protein-hydrolyzing saprospiraceae (Candidatus Epiflobacter spp.) in activated sludge
    • PubMed
    • Xia Y, Kong Y, Thomsen TR, Halkjaer Nielsen P. Identification and ecophysiological characterization of epiphytic protein-hydrolyzing saprospiraceae (Candidatus Epiflobacter spp.) in activated sludge. Appl Environ Microbiol 2008; 74:2229-2238.PubMed http://dx.doi.org/10.1128/AEM.02502-07
    • (2008) Appl Environ Microbiol , vol.74 , pp. 2229-2238
    • Xia, Y.1    Kong, Y.2    Thomsen, T.R.3    Halkjaer, N.P.4
  • 10
    • 0038355211 scopus 로고    scopus 로고
    • Algicidal activity and gliding motility of Saprospira sp. SS98-5
    • PubMed
    • Furusawa G, Yoshikawa T, Yasuda A, Sakata T. Algicidal activity and gliding motility of Saprospira sp. SS98-5. Can J Microbiol 2003; 49:92-100.PubMed http://dx.doi.org/10.1139/w03-017
    • (2003) Can J Microbiol , vol.49 , pp. 92-100
    • Furusawa, G.1    Yoshikawa, T.2    Yasuda, A.3    Sakata, T.4
  • 11
    • 0038149904 scopus 로고
    • Apparent predation of Microcystis aeruginosa Kütz. emend. Elenkin by a Saprospira-like bacterium in a hypertrophic lake (Hartbeespoort Dam, South Africa)
    • Ashton PJ, Robarts RD. Apparent predation of Microcystis aeruginosa Kütz. emend. Elenkin by a Saprospira-like bacterium in a hypertrophic lake (Hartbeespoort Dam, South Africa). J. Limnol. Soc. South Afr. 1987; 13:44-47.
    • (1987) J. Limnol. Soc. South Afr , vol.13 , pp. 44-47
    • Ashton, P.J.1    Robarts, R.D.2
  • 12
    • 79953029749 scopus 로고    scopus 로고
    • Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis
    • PubMed
    • Burke C, Thomas T, Lewis M, Steinberg P, Kjelleberg S. Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis. ISME J 2011; 5:590-600.PubMed http://dx.doi.org/10.1038/ismej.2010.164
    • (2011) ISME J , vol.5 , pp. 590-600
    • Burke, C.1    Thomas, T.2    Lewis, M.3    Steinberg, P.4    Kjelleberg, S.5
  • 13
    • 32844465389 scopus 로고    scopus 로고
    • A novel bacterium Saprospira sp. strain PdY3 forms bundles and lyses cyanobacteria
    • PubMed
    • Shi M, Zou L, Liu X, Gao Y, Zhang Z, Wu W, Wen D, Chen Z, An C. A novel bacterium Saprospira sp. strain PdY3 forms bundles and lyses cyanobacteria. Front Biosci 2006; 11:1916-1923.PubMed http://dx.doi.org/10.2741/1934
    • (2006) Front Biosci , vol.11 , pp. 1916-1923
    • Shi, M.1    Zou, L.2    Liu, X.3    Gao, Y.4    Zhang, Z.5    Wu, W.6    Wen, D.7    Chen, Z.8    An, C.9
  • 14
    • 0014430956 scopus 로고
    • Rhapidosomes: 2'-O-methylated ribonucleoproteins
    • PubMed
    • Correll DL. Rhapidosomes: 2'-O-methylated ribonucleoproteins. Science 1968; 161:372-373.PubMed http://dx.doi.org/10.1126/science.161.3839.372
    • (1968) Science , vol.161 , pp. 372-373
    • Correll, D.L.1
  • 15
    • 0015526602 scopus 로고
    • Characterization of rhapidosomes of Saprospira grandis
    • PubMed
    • Delk AS, Dekker CA. Characterization of rhapidosomes of Saprospira grandis. J Mol Biol 1972; 64:287-295.PubMed http://dx.doi.org/10.1016/0022-2836(72)90336-1
    • (1972) J Mol Biol , vol.64 , pp. 287-295
    • Delk, A.S.1    Dekker, C.A.2
  • 16
    • 1842326382 scopus 로고
    • Rod-shaped particles in Saprospira
    • Lewin RA. Rod-shaped particles in Saprospira. Nature 1963; 198:103-104. http://dx.doi.org/10.1038/198103b0
    • (1963) Nature , vol.198 , pp. 103-104
    • Lewin, R.A.1
  • 17
    • 0013832793 scopus 로고
    • Formation of rhapidosomes in Saprospira
    • PubMed
    • Lewin RA, Kiethe J. Formation of rhapidosomes in Saprospira. Can J Microbiol 1965; 11:935-938.PubMed http://dx.doi.org/10.1139/m65-124
    • (1965) Can J Microbiol , vol.11 , pp. 935-938
    • Lewin, R.A.1    Kiethe, J.2
  • 18
    • 0014259327 scopus 로고
    • Purification and structure of rhapidosomes
    • PubMed
    • Reichle RE, Lewin RA. Purification and structure of rhapidosomes. Can J Microbiol 1968; 14:211-213.PubMed http://dx.doi.org/10.1139/m68-036
    • (1968) Can J Microbiol , vol.14 , pp. 211-213
    • Reichle, R.E.1    Lewin, R.A.2
  • 20
    • 0027085819 scopus 로고
    • A partial phylogenetic analysis of the flavobacter-bacteroides phylum: Basis for taxonomic restructuring
    • PubMed
    • Gherna R, Woese CR. A partial phylogenetic analysis of the flavobacter-bacteroides phylum: basis for taxonomic restructuring. Syst Appl Microbiol 1992; 15:513-521.PubMed http://dx.doi.org/10.1016/S0723-2020(11)80110-4
    • (1992) Syst Appl Microbiol , vol.15 , pp. 513-521
    • Gherna, R.1    Woese, C.R.2
  • 21
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likeli-hood-based phylogenetic analyses with thousands of taxa and mixed models
    • PubMed
    • Stamatakis A. RAxML-VI-HPC: maximum likeli-hood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006; 22:2688-2690.PubMed http://dx.doi.org/10.1093/bioinformatics/btl446
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 22
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • PubMed
    • Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579.PubMed http://dx.doi.org/10.1073/pnas.87.12.4576
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 23
    • 0000685441 scopus 로고    scopus 로고
    • The Road Map to the Manual
    • Garrity GM, Boone DR, Castenholz RW, editors, Second Edition ed, New York: Springer
    • Garrity GM, Holt JG. The Road Map to the Manual. In: Garrity GM, Boone DR, Castenholz RW, editors. Bergey's Manual of Systematic Bacteriology. Second Edition ed. Volume 1. New York: Springer; 2001. p 119-169.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 119-169
    • Garrity, G.M.1    Holt, J.G.2
  • 24
    • 0000685441 scopus 로고    scopus 로고
    • Taxonomic Outline of the Archaea and Bacteria
    • Garrity GM, Boone DR, Castenholz RW, editors, Second Edition ed, New York: Springer
    • Garrity GM, Holt JG. Taxonomic Outline of the Archaea and Bacteria. In: Garrity GM, Boone DR, Castenholz RW, editors. Bergey's Manual of Systematic Bacteriology. Second Edition ed. Volume 1. New York: Springer; 2001. p 155-166.
    • (2001) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 155-166
    • Garrity, G.M.1    Holt, J.G.2
  • 25
    • 0040460179 scopus 로고    scopus 로고
    • List of Bacterial Names with Standing in Nomenclature: A folder available on the Internet
    • PubMed
    • Euzéby JP. List of Bacterial Names with Standing in Nomenclature: a folder available on the Internet. Int J Syst Bacteriol 1997; 47:590-592.PubMed http://dx.doi.org/10.1099/00207713-47-2-590
    • (1997) Int J Syst Bacteriol , vol.47 , pp. 590-592
    • Euzéby, J.P.1
  • 28
    • 84859017549 scopus 로고    scopus 로고
    • AMOS package
    • AMOS package.
  • 29
    • 84859049919 scopus 로고    scopus 로고
    • Prokaryotic Genomes Automatic Annotation Pipe-line NCBI. (PGAAP)
    • Prokaryotic Genomes Automatic Annotation Pipe-line NCBI. (PGAAP). http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
  • 30
    • 84859017548 scopus 로고    scopus 로고
    • Protein Clusters
    • Protein Clusters. http://www.ncbi.nlm.nih.gov/proteinclusters.
  • 31
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan--an integration platform for the signature-recognition methods in InterPro
    • PubMed
    • Zdobnov EM, Apweiler R. InterProScan--an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001; 17:847-848.PubMed http://dx.doi.org/10.1093/bioinformatics/17.9.847
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2
  • 32
    • 84859017550 scopus 로고    scopus 로고
    • InterProScan (SOAP)
    • InterProScan (SOAP). http://www.ebi.ac.uk/Tools/webservices/services/pfa/iprscan_soap.
  • 33
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • PubMed
    • Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25:955-964.PubMed http://dx.doi.org/10.1093/nar/25.5.955
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 35
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: A web tool to identify clustered regularly interspaced short palindromic repeats
    • Web Server issue
    • Grissa I, Vergnaud G, Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 2007;35(Web Server issue):W52-7.
    • (2007) Nucleic Acids Res , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 36
    • 61449201423 scopus 로고    scopus 로고
    • IslandViewer: An integrated interface for computational identification and visualization of genomic islands
    • PubMed
    • Langille MG, Brinkman FS. IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics 2009; 25:664-665.PubMed http://dx.doi.org/10.1093/bioinformatics/btp030
    • (2009) Bioinformatics , vol.25 , pp. 664-665
    • Langille, M.G.1    Brinkman, F.S.2
  • 37
    • 11244328060 scopus 로고    scopus 로고
    • The Pathway Tools software
    • PubMed
    • Karp PD, Paley S, Romero P. The Pathway Tools software. Bioinformatics 2002; 18(Suppl 1):S225-S232.PubMed http://dx.doi.org/10.1093/bioinformatics/18.suppl_1.S225
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Karp, P.D.1    Paley, S.2    Romero, P.3
  • 38
    • 21244464335 scopus 로고    scopus 로고
    • Binding properties and evolution of homodimers in protein-protein interaction networks
    • PubMed
    • Ispolatov I, Yuryev A, Mazo I, Maslov S. Binding properties and evolution of homodimers in protein-protein interaction networks. Nucleic Acids Res 2005; 33:3629-3635.PubMed http://dx.doi.org/10.1093/nar/gki678
    • (2005) Nucleic Acids Res , vol.33 , pp. 3629-3635
    • Ispolatov, I.1    Yuryev, A.2    Mazo, I.3    Maslov, S.4
  • 40
    • 40049085785 scopus 로고    scopus 로고
    • Slipins: Ancient origin, duplication and diversification of the stomatin protein family
    • PubMed
    • Green JB, Young JP. Slipins: ancient origin, duplication and diversification of the stomatin protein family. BMC Evol Biol 2008; 8:44-55.PubMed http://dx.doi.org/10.1186/1471-2148-8-44
    • (2008) BMC Evol Biol , vol.8 , pp. 44-55
    • Green, J.B.1    Young, J.P.2
  • 41
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: Identification of ortholog groups for eukaryotic genomes
    • PubMed
    • Li L, Stoeckert CJ, Jr., Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003; 13:2178-2189.PubMed http://dx.doi.org/10.1101/gr.1224503
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 42
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • PubMed
    • Enright AJ, Van Dongen S, Ouzounis CA. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 2002; 30:1575-1584.PubMed http://dx.doi.org/10.1093/nar/30.7.1575
    • (2002) Nucleic Acids Res , vol.30 , pp. 1575-1584
    • Enright, A.J.1    van Dongen, S.2    Ouzounis, C.A.3
  • 44
    • 77955638725 scopus 로고    scopus 로고
    • Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla sericea' Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov
    • PubMed
    • Nedashkovskaya OI, Vancanneyt M, Kim SB, Bae KS. Reclassification of Flexibacter tractuosus (Lewin 1969) Leadbetter 1974 and 'Microscilla sericea' Lewin 1969 in the genus Marivirga gen. nov. as Marivirga tractuosa comb. nov. and Marivirga sericea nom. rev., comb. nov. Int J Syst Evol Microbiol 2010; 60:1858-1863.PubMed http://dx.doi.org/10.1099/ijs.0.016121-0
    • (2010) Int J Syst Evol Microbiol , vol.60 , pp. 1858-1863
    • Nedashkovskaya, O.I.1    Vancanneyt, M.2    Kim, S.B.3    Bae, K.S.4


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