메뉴 건너뛰기




Volumn 74, Issue 7, 2008, Pages 2229-2238

Identification and ecophysiological characterization of epiphytic protein-hydrolyzing Saprospiraceae ("Candidatus epiflobacter" spp.) in activated sludge

Author keywords

[No Author keywords available]

Indexed keywords

ECOPHYSIOLOGICAL CHARACTERIZATION; EPIPHYTIC RODS; HISTOCHEMICAL STAINING; MICROAUTORADIOGRAPHY;

EID: 42049089111     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02502-07     Document Type: Article
Times cited : (177)

References (45)
  • 1
    • 0025294528 scopus 로고
    • Combination of 16S ribosomal-RNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Combination of 16S ribosomal-RNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1919-1925.
    • (1990) Appl. Environ. Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in-situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in-situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 3
    • 0036667419 scopus 로고    scopus 로고
    • Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal
    • Björnsson, L., P. Hugenholtz, G. W. Tyson, and L. L. Blackall. 2002. Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal. Microbiology 148: 2309-2318.
    • (2002) Microbiology , vol.148 , pp. 2309-2318
    • Björnsson, L.1    Hugenholtz, P.2    Tyson, G.W.3    Blackall, L.L.4
  • 4
    • 0019513663 scopus 로고
    • Gene organization and primaiy structure of a ribosomal-RNA operon from Escherichia coli
    • Brosius, J., T. J. Dull, D. D. Sleeter, and H. F. Noller. 1981. Gene organization and primaiy structure of a ribosomal-RNA operon from Escherichia coli. J. Mol. Biol. 148:107-127.
    • (1981) J. Mol. Biol , vol.148 , pp. 107-127
    • Brosius, J.1    Dull, T.J.2    Sleeter, D.D.3    Noller, H.F.4
  • 6
    • 0034068899 scopus 로고    scopus 로고
    • Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
    • Cottrell, M. T., and D. L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl. Environ. Microbiol. 66:1692-1697.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1692-1697
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 7
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
    • Daims, H., A. Bruhl, R. Amann, K. H. Schleifer, and M. Wagner. 1999. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444.
    • (1999) Syst. Appl. Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Bruhl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 9
    • 0016495388 scopus 로고
    • Filamentous organisms observed in activated sludge
    • Eikelboom, D. H. 1975. Filamentous organisms observed in activated sludge. Water Res. 9:365-388.
    • (1975) Water Res , vol.9 , pp. 365-388
    • Eikelboom, D.H.1
  • 10
    • 0036135188 scopus 로고    scopus 로고
    • Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigenous to freshwater lakes
    • Gich, F., J. Garcia-Gil, and J. Overmann. 2001. Previously unknown and phylogenetically diverse members of the green nonsulfur bacteria are indigenous to freshwater lakes. Arch. Microbiol. 177:1-10.
    • (2001) Arch. Microbiol , vol.177 , pp. 1-10
    • Gich, F.1    Garcia-Gil, J.2    Overmann, J.3
  • 11
    • 29144450332 scopus 로고    scopus 로고
    • Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization- microautoradiography
    • Ginige, M. P., J. Keller, and L. L. Blackall. 2005. Investigation of an acetate-fed denitrifying microbial community by stable isotope probing, full-cycle rRNA analysis, and fluorescent in situ hybridization- microautoradiography. Appl. Environ. Microbiol. 71:8683-8691.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 8683-8691
    • Ginige, M.P.1    Keller, J.2    Blackall, L.L.3
  • 12
    • 1842612577 scopus 로고    scopus 로고
    • Bacterial biofilms: From the natural environment to infectious diseases
    • Hall-Stoodley, L., J. W. Costerton, and P. Stoodley. 2004. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol. 2:95-108.
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 95-108
    • Hall-Stoodley, L.1    Costerton, J.W.2    Stoodley, P.3
  • 13
    • 33845740711 scopus 로고    scopus 로고
    • Hosoya, S., V. Arunpairojana, C. Suwannachart, A. Kanjana-Opas, and A. Yokota. 2006. Aureispira marina gen. nov., sp. nov., a gliding, arachidonic acid-containing bacterium isolated from the southern coastline of Thailand. Int. J. Syst. Evol. Microbiol. 56:2931-2935.
    • Hosoya, S., V. Arunpairojana, C. Suwannachart, A. Kanjana-Opas, and A. Yokota. 2006. Aureispira marina gen. nov., sp. nov., a gliding, arachidonic acid-containing bacterium isolated from the southern coastline of Thailand. Int. J. Syst. Evol. Microbiol. 56:2931-2935.
  • 14
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 15
    • 0035163571 scopus 로고    scopus 로고
    • Investigation of candidate division TM7, a recently recognized major lineage of the domain bacteria with no known pure culture representatives
    • Hugenholtz, P., G. W. Tyson, R. I. Webb, A. M. Wagner, and L. L. Blackall. 2001. Investigation of candidate division TM7, a recently recognized major lineage of the domain bacteria with no known pure culture representatives. Appl. Environ. Microbiol. 67:411-419.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 411-419
    • Hugenholtz, P.1    Tyson, G.W.2    Webb, R.I.3    Wagner, A.M.4    Blackall, L.L.5
  • 16
    • 33845545991 scopus 로고    scopus 로고
    • Community structure of bacteria associated with sheaths of freshwater and brackish Thioploca species
    • Kojima, H., Y. Koizumi, and M. Fukui. 2006. Community structure of bacteria associated with sheaths of freshwater and brackish Thioploca species. Microb. Ecol. 52:765-773.
    • (2006) Microb. Ecol , vol.52 , pp. 765-773
    • Kojima, H.1    Koizumi, Y.2    Fukui, M.3
  • 17
    • 37449020416 scopus 로고    scopus 로고
    • Structure and function of the microbial community in a full-scale enhanced biological phosphorus removal plant
    • Kong, Y. H., Y. Xia, J. L. Nielsen, and P. H. Nielsen. 2007. Structure and function of the microbial community in a full-scale enhanced biological phosphorus removal plant. Microbiology 153:4061-4073.
    • (2007) Microbiology , vol.153 , pp. 4061-4073
    • Kong, Y.H.1    Xia, Y.2    Nielsen, J.L.3    Nielsen, P.H.4
  • 18
    • 22144485591 scopus 로고    scopus 로고
    • Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants
    • Kong, Y. H., J. L. Nielsen, and P. H. Nielsen. 2005. Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants. Appl. Environ. Microbiol. 71:4076-4085.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 4076-4085
    • Kong, Y.H.1    Nielsen, J.L.2    Nielsen, P.H.3
  • 19
    • 4644327755 scopus 로고    scopus 로고
    • Microautoradiographic study of Rhodocyclus-related polyphosphate- accumulating bacteria in full-scale enhanced biological phosphorus removal plants
    • Kong, Y. H., J. L. Nielsen, and P. H. Nielsen. 2004. Microautoradiographic study of Rhodocyclus-related polyphosphate- accumulating bacteria in full-scale enhanced biological phosphorus removal plants. Appl. Environ. Microbiol. 70:5383-5390.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5383-5390
    • Kong, Y.H.1    Nielsen, J.L.2    Nielsen, P.H.3
  • 20
    • 33644964167 scopus 로고    scopus 로고
    • Ecophysiology of a group of uncultured gammaproteobacterial glycogen- accumulating organisms in full-scale enhanced biological phosphorus removal wastewater treatment plants
    • Kong, Y. H., Y. Xia, J. L. Nielsen, and P. H. Nielsen. 2006. Ecophysiology of a group of uncultured gammaproteobacterial glycogen- accumulating organisms in full-scale enhanced biological phosphorus removal wastewater treatment plants. Environ. Microbiol. 8:479-489.
    • (2006) Environ. Microbiol , vol.8 , pp. 479-489
    • Kong, Y.H.1    Xia, Y.2    Nielsen, J.L.3    Nielsen, P.H.4
  • 22
    • 22944435764 scopus 로고    scopus 로고
    • Ecophysiology of the filamentous alphaproteobacterium Meganema perideroedes in activated sludge
    • Kragelund, C., J. L. Nielsen, T. R. Thomsen, and P. H. Nielsen. 2005. Ecophysiology of the filamentous alphaproteobacterium Meganema perideroedes in activated sludge. FEMS Microbiol. Ecol. 54:111-122.
    • (2005) FEMS Microbiol. Ecol , vol.54 , pp. 111-122
    • Kragelund, C.1    Nielsen, J.L.2    Thomsen, T.R.3    Nielsen, P.H.4
  • 23
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionaiy genetics analysis and sequence alignment
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionaiy genetics analysis and sequence alignment. Brief. Bioinform. 5:150-163.
    • (2004) Brief. Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 24
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow ed, John Wiley & Sons, Chichester, United Kingdom
    • Lane, D. J. 1991.16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Modern microbial methods: nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
    • (1991) Modern microbial methods: Nucleic acid techniques in bacterial systematics , pp. 115-175
    • Lane, D.J.1
  • 25
    • 0032986790 scopus 로고    scopus 로고
    • Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology
    • Lee, N., P. H. Nielsen, K. H. Andreasen, S. Juretschko, J. L. Nielsen, K.-H. Schleifer, and M. Wagner. 1999. Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl. Environ. Microbiol. 65:1289-1297.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 1289-1297
    • Lee, N.1    Nielsen, P.H.2    Andreasen, K.H.3    Juretschko, S.4    Nielsen, J.L.5    Schleifer, K.-H.6    Wagner, M.7
  • 27
    • 0037258055 scopus 로고    scopus 로고
    • probeBase: An online resource for rRNA-targeted oligonucleotide probes
    • Loy, A., M. Horn, and M. Wagner. 2003. probeBase: an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res. 31:514-516.
    • (2003) Nucleic Acids Res , vol.31 , pp. 514-516
    • Loy, A.1    Horn, M.2    Wagner, M.3
  • 29
    • 0036213775 scopus 로고    scopus 로고
    • Processes and modeling of hydrolysis of particulate organic matter in aerobic wastewater treatment - a review
    • Morgenroth, E., R. Kommedal, and P. Harremoës. 2002. Processes and modeling of hydrolysis of particulate organic matter in aerobic wastewater treatment - a review. Water Sci. Technol. 45:25-40.
    • (2002) Water Sci. Technol , vol.45 , pp. 25-40
    • Morgenroth, E.1    Kommedal, R.2    Harremoës, P.3
  • 30
    • 0028887837 scopus 로고
    • Taxonomic note: Implementation of the provisional status Candidatus for incompletely described prokaryotes
    • Murray, R. G. E., and E. Stackebrandt. 1995. Taxonomic note: implementation of the provisional status Candidatus for incompletely described prokaryotes. Int. J. Syst. Bacteriol. 45:186-187.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 186-187
    • Murray, R.G.E.1    Stackebrandt, E.2
  • 31
    • 0037347176 scopus 로고    scopus 로고
    • Quantification of cell-specific substrate uptake by probe-defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization
    • Nielsen, J. L., D. Christensen, M. Kloppenborg, and P. H. Nielsen. 2003. Quantification of cell-specific substrate uptake by probe-defined bacteria under in situ conditions by microautoradiography and fluorescence in situ hybridization. Environ. Microbiol. 5:202-211.
    • (2003) Environ. Microbiol , vol.5 , pp. 202-211
    • Nielsen, J.L.1    Christensen, D.2    Kloppenborg, M.3    Nielsen, P.H.4
  • 32
    • 0031615975 scopus 로고    scopus 로고
    • The GenBank sequence database
    • Ouellette, B. F. F. 1998. The GenBank sequence database. Bioinformatics 39:16-45.
    • (1998) Bioinformatics , vol.39 , pp. 16-45
    • Ouellette, B.F.F.1
  • 33
    • 3042734654 scopus 로고    scopus 로고
    • Biofilms 2003: Emerging themes and challenges in studies of surface-associated microbial life
    • Parsek, M. R., and C. Fuqua. 2004. Biofilms 2003: emerging themes and challenges in studies of surface-associated microbial life. J. Bacteriol. 186: 4427-4440.
    • (2004) J. Bacteriol , vol.186 , pp. 4427-4440
    • Parsek, M.R.1    Fuqua, C.2
  • 35
    • 42049121058 scopus 로고    scopus 로고
    • Reichenbach, H. 1591. The order Cytophagales, p. 3631-3675. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer, (ed.), The prokaryotes, 2nd ed. Springer Verlag, New York, NY.
    • Reichenbach, H. 1591. The order Cytophagales, p. 3631-3675. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer, (ed.), The prokaryotes, 2nd ed. Springer Verlag, New York, NY.
  • 36
    • 0033951021 scopus 로고    scopus 로고
    • Dynamics of bacterial community composition and activity during a mesocosm diatom bloom
    • Riemann, L., G. F. Steward, and F. Azam. 2000. Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl. Environ. Microbiol. 66:578-587.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 578-587
    • Riemann, L.1    Steward, G.F.2    Azam, F.3
  • 37
    • 11844261555 scopus 로고    scopus 로고
    • Microthrix parvicella, a filamentous bacterium causing bulking and foaming in activated sludge system s: A review of current knowledge
    • Rossetti, S., M. C. Tomei, P. H. Nielsen, and V. Tandoi. 2005. "Microthrix parvicella," a filamentous bacterium causing bulking and foaming in activated sludge system s: a review of current knowledge. FEMS Microbiol. Rev. 29:49-64.
    • (2005) FEMS Microbiol. Rev , vol.29 , pp. 49-64
    • Rossetti, S.1    Tomei, M.C.2    Nielsen, P.H.3    Tandoi, V.4
  • 38
    • 17444410849 scopus 로고    scopus 로고
    • Diversity and phylogenetic affiliations of morphologically conspicuous large filamentous bacteria occurring in the pelagic zones of a broad spectrum of freshwater habitats
    • Schauer, M., and M. W. Hahn. 2005. Diversity and phylogenetic affiliations of morphologically conspicuous large filamentous bacteria occurring in the pelagic zones of a broad spectrum of freshwater habitats. Appl. Environ. Microbiol. 71:1931-1940.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1931-1940
    • Schauer, M.1    Hahn, M.W.2
  • 39
    • 18744372991 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries
    • Schramm, A., B. M. Fuchs, J. L. Nielsen, M. Tonolla, and D. A. Stahl. 2002. Fluorescence in situ hybridization of 16S rRNA gene clones (Clone-FISH) for probe validation and screening of clone libraries. Environ. Microbiol. 4:713-720.
    • (2002) Environ. Microbiol , vol.4 , pp. 713-720
    • Schramm, A.1    Fuchs, B.M.2    Nielsen, J.L.3    Tonolla, M.4    Stahl, D.A.5
  • 41
    • 33947302827 scopus 로고    scopus 로고
    • Taxonomic parameters revisited: Tarnished gold standards
    • Stackebrandt, E., and J. Ebers. 2006. Taxonomic parameters revisited: tarnished gold standards. Microbiol. Today 33:152-155
    • (2006) Microbiol. Today , vol.33 , pp. 152-155
    • Stackebrandt, E.1    Ebers, J.2
  • 42
    • 0035983603 scopus 로고    scopus 로고
    • In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth
    • Thomsen, T. R., B. V. Kjellerup, J. L. Nielsen, P. Hugenholtz, and P. H. Nielsen. 2002. In situ studies of the phylogeny and physiology of filamentous bacteria with attached growth. Environ. Microbiol. 4:383-391.
    • (2002) Environ. Microbiol , vol.4 , pp. 383-391
    • Thomsen, T.R.1    Kjellerup, B.V.2    Nielsen, J.L.3    Hugenholtz, P.4    Nielsen, P.H.5
  • 43
    • 1942539977 scopus 로고    scopus 로고
    • Micromanipulation and further identification of FISH-labelled microcolonies of a dominant denitrifying bacterium in activated sludge
    • Thomsen, T. R., J. L. Nielsen, N. B. Ramsing, and P. H. Nielsen. 2004. Micromanipulation and further identification of FISH-labelled microcolonies of a dominant denitrifying bacterium in activated sludge. Environ. Microbiol. 6:470-479.
    • (2004) Environ. Microbiol , vol.6 , pp. 470-479
    • Thomsen, T.R.1    Nielsen, J.L.2    Ramsing, N.B.3    Nielsen, P.H.4
  • 44
    • 0015538955 scopus 로고
    • Investigations on sheathed bacterium Haliscomenobacter hydrossis gen. nov., sp. nov., isolated from activated sludge. Antonie van Leeuwenhoek J
    • van Veen, W. L., D. van der Kooij, E. C. Geuze, and A. W. van der Vlies. 1973. Investigations on sheathed bacterium Haliscomenobacter hydrossis gen. nov., sp. nov., isolated from activated sludge. Antonie van Leeuwenhoek J. Microbiol. 39:207-216.
    • (1973) Microbiol , vol.39 , pp. 207-216
    • van Veen, W.L.1    van der Kooij, D.2    Geuze, E.C.3    van der Vlies, A.W.4
  • 45
    • 33947245553 scopus 로고    scopus 로고
    • In situ detection of protein-hydrolysing microorganisms in activated sludge
    • Xia, Y., Y. H. Kong, and P. H. Nielsen. 2007. In situ detection of protein-hydrolysing microorganisms in activated sludge. FEMS Microbiol. Ecol. 60: 156-165.
    • (2007) FEMS Microbiol. Ecol , vol.60 , pp. 156-165
    • Xia, Y.1    Kong, Y.H.2    Nielsen, P.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.