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Volumn 17, Issue 3, 2012, Pages 2855-2876

Site-specific incorporation of functional components into RNA by an unnatural base pair transcription system

Author keywords

T7 RNA polymerase; Transcription; Unnatural base pair

Indexed keywords

2 PYRROLECARBOXALDEHYDE; 5 CARBOXYTETRAMETHYLRHODAMINE SUCCINIMIDYL ESTER; 5-CARBOXYTETRAMETHYLRHODAMINE SUCCINIMIDYL ESTER; 6 CARBOXYFLUORESCEIN; 6-CARBOXYFLUORESCEIN; BACTERIOPHAGE T7 RNA POLYMERASE; DNA DIRECTED RNA POLYMERASE; FLUORESCEIN DERIVATIVE; FLUORESCENT DYE; PYRIDINE DERIVATIVE; PYRROLE DERIVATIVE; PYRROLE-2-CARBOXALDEHYDE; RHODAMINE; RIBONUCLEOTIDE; RNA; VIRUS PROTEIN;

EID: 84858974138     PISSN: None     EISSN: 14203049     Source Type: Journal    
DOI: 10.3390/molecules17032855     Document Type: Article
Times cited : (34)

References (25)
  • 1
    • 6944225455 scopus 로고    scopus 로고
    • Understanding nucleic acids using synthetic chemistry
    • Benner, S. A. Understanding nucleic acids using synthetic chemistry. Acc. Chem. Res. 2004, 37, 784-797.
    • (2004) Acc. Chem. Res. , vol.37 , pp. 784-797
    • Benner, S.A.1
  • 2
    • 0344851941 scopus 로고    scopus 로고
    • Beyond A, C, G and T: Augmenting nature's alphabet
    • DOI 10.1016/j.cbpa.2003.10.011
    • Henry, A. A.; Romesberg, F. E. Beyond A, C, G and T: Augmenting nature's alphabet. Curr. Opin. Chem. Biol. 2003, 7, 727-733. (Pubitemid 37486117)
    • (2003) Current Opinion in Chemical Biology , vol.7 , Issue.6 , pp. 727-733
    • Henry, A.A.1    Romesberg, F.E.2
  • 3
    • 62649161943 scopus 로고    scopus 로고
    • Redesigning the architecture of the base pair: Toward biochemical and biological function of new genetic sets
    • Krueger, A. T.; Kool, E. T. Redesigning the architecture of the base pair: Toward biochemical and biological function of new genetic sets. Chem. Biol. 2009, 16, 242-248.
    • (2009) Chem. Biol. , vol.16 , pp. 242-248
    • Krueger, A.T.1    Kool, E.T.2
  • 4
    • 33846393737 scopus 로고    scopus 로고
    • Unnatural base pair systems for DNA/RNA-based biotechnology
    • DOI 10.1016/j.cbpa.2006.09.021, PII S1367593106001529
    • Hirao, I. Unnatural base pair systems for DNA/RNA-based biotechnology. Curr. Opin. Chem. Biol. 2006, 10, 622-627. (Pubitemid 44822665)
    • (2006) Current Opinion in Chemical Biology , vol.10 , Issue.6 , pp. 622-627
    • Hirao, I.1
  • 5
    • 79953888771 scopus 로고    scopus 로고
    • Unnatural base pair systems for sensing and diagnostic applications
    • Kimoto, M.; Cox, R. S., 3rd.; Hirao, I. Unnatural base pair systems for sensing and diagnostic applications. Expert Rev. Mol. Diagn. 2011, 11, 321-331.
    • (2011) Expert Rev. Mol. Diagn. , vol.11 , pp. 321-331
    • Kimoto, M.1    Cox III, R.S.2    Hirao, I.3
  • 6
    • 33747762272 scopus 로고    scopus 로고
    • An unnatural hydrophobic base pair system: Site-specific incorporation of nucleotide analogs into DNA and RNA
    • DOI 10.1038/nmeth915, PII NMETH915
    • Hirao, I.; Kimoto, M.; Mitsui, T.; Fujiwara, T.; Kawai, R.; Sato, A.; Harada, Y.; Yokoyama, S. An unnatural hydrophobic base pair system: Site-specific incorporation of nucleotide analogs into DNA and RNA. Nat. Methods 2006, 3, 729-735. (Pubitemid 44275742)
    • (2006) Nature Methods , vol.3 , Issue.9 , pp. 729-735
    • Hirao, I.1    Kimoto, M.2    Mitsui, T.3    Fujiwara, T.4    Kawai, R.5    Sato, A.6    Harada, Y.7    Yokoyama, S.8
  • 7
    • 59649091247 scopus 로고    scopus 로고
    • An unnatural base pair system for efficient PCR amplification and functionalization of DNA molecules
    • Kimoto, M.; Kawai, R.; Mitsui, T.; Yokoyama, S.; Hirao, I. An unnatural base pair system for efficient PCR amplification and functionalization of DNA molecules. Nucleic Acids Res. 2009, 37, e14.
    • (2009) Nucleic Acids Res. , vol.37
    • Kimoto, M.1    Kawai, R.2    Mitsui, T.3    Yokoyama, S.4    Hirao, I.5
  • 10
    • 78249251747 scopus 로고    scopus 로고
    • Solution structure, mechanism of replication, and optimization of an unnatural base pair
    • Malyshev, D. A.; Pfaff, D. A.; Ippoliti, S. I.; Hwang, G. T.; Dwyer, T. J.; Romesberg, F. E. Solution structure, mechanism of replication, and optimization of an unnatural base pair. Chem. Eur. J. 2010, 16, 12650-12659.
    • (2010) Chem. Eur. J. , vol.16 , pp. 12650-12659
    • Malyshev, D.A.1    Pfaff, D.A.2    Ippoliti, S.I.3    Hwang, G.T.4    Dwyer, T.J.5    Romesberg, F.E.6
  • 11
    • 34547843669 scopus 로고    scopus 로고
    • Enzymatic incorporation of a third nucleobase pair
    • DOI 10.1093/nar/gkm395
    • Yang, Z.; Sismour, A. M.; Sheng, P.; Puskar, N. L.; Benner, S. A. Enzymatic incorporation of a third nucleobase pair. Nucleic Acids Res. 2007, 35, 4238-4249. (Pubitemid 47244580)
    • (2007) Nucleic Acids Research , vol.35 , Issue.13 , pp. 4238-4249
    • Yang, Z.1    Sismour, A.M.2    Sheng, P.3    Puskar, N.L.4    Benner, S.A.5
  • 12
    • 80053068450 scopus 로고    scopus 로고
    • Amplification, mutation, and sequencing of a six-letter synthetic genetic system
    • Yang, Z.; Chen, F.; Alvarado, J. B.; Benner, S. A. Amplification, mutation, and sequencing of a six-letter synthetic genetic system. J. Am. Chem. Soc. 2011, 133, 15105-15112.
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 15105-15112
    • Yang, Z.1    Chen, F.2    Alvarado, J.B.3    Benner, S.A.4
  • 14
    • 77954306363 scopus 로고    scopus 로고
    • Site-specific fluorescent probing of RNA molecules by unnatural base-pair transcription for local structural conformation analysis
    • Hikida, Y.; Kimoto, M.; Yokoyama, S.; Hirao, I. Site-specific fluorescent probing of RNA molecules by unnatural base-pair transcription for local structural conformation analysis. Nat. Protoc. 2010, 5, 1312-1323.
    • (2010) Nat. Protoc. , vol.5 , pp. 1312-1323
    • Hikida, Y.1    Kimoto, M.2    Yokoyama, S.3    Hirao, I.4
  • 15
    • 79951776133 scopus 로고    scopus 로고
    • Site-specific incorporation of extra components into RNA by transcription using unnatural base pair systems
    • Kimoto, M.; Hirao, I. Site-specific incorporation of extra components into RNA by transcription using unnatural base pair systems. Methods Mol. Biol. 2010, 634, 355-369.
    • (2010) Methods Mol. Biol. , vol.634 , pp. 355-369
    • Kimoto, M.1    Hirao, I.2
  • 16
    • 83055197046 scopus 로고    scopus 로고
    • Site-specific labeling of DNA and RNA using an efficiently replicated and transcribed class of unnatural base pairs
    • Seo, Y. J.; Malyshev, D. A.; Lavergne, T.; Ordoukhanian, P.; Romesberg, F. E. Site-specific labeling of DNA and RNA using an efficiently replicated and transcribed class of unnatural base pairs. J. Am. Chem. Soc. 2011, 133, 19878-19888.
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 19878-19888
    • Seo, Y.J.1    Malyshev, D.A.2    Lavergne, T.3    Ordoukhanian, P.4    Romesberg, F.E.5
  • 17
    • 67849087122 scopus 로고    scopus 로고
    • Transcription of an expanded genetic alphabet
    • Seo, Y. J.; Matsuda, S.; Romesberg, F. E. Transcription of an expanded genetic alphabet. J. Am. Chem. Soc. 2009, 131, 5046-5047.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 5046-5047
    • Seo, Y.J.1    Matsuda, S.2    Romesberg, F.E.3
  • 18
    • 0000615415 scopus 로고
    • Site-specific enzymatic incorporation of an unnatural base, N6-(6-aminohexyl) isoguanosine, into RNA
    • Tor, Y.; Dervan, P. B. Site-specific enzymatic incorporation of an unnatural base, N6-(6-aminohexyl) isoguanosine, into RNA. J. Am. Chem. Soc. 1993, 115, 4461-4467.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 4461-4467
    • Tor, Y.1    Dervan, P.B.2
  • 19
    • 78049369185 scopus 로고    scopus 로고
    • A new unnatural base pair system between fluorophore and quencher base analogues for nucleic acid-based imaging technology
    • Kimoto, M.; Mitsui, T.; Yamashige, R.; Sato, A.; Yokoyama, S.; Hirao, I. A new unnatural base pair system between fluorophore and quencher base analogues for nucleic acid-based imaging technology. J. Am. Chem. Soc. 2010, 132, 15418-15426.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 15418-15426
    • Kimoto, M.1    Mitsui, T.2    Yamashige, R.3    Sato, A.4    Yokoyama, S.5    Hirao, I.6
  • 20
    • 29044441747 scopus 로고    scopus 로고
    • Site-specific fluorescent labeling of RNA molecules by specific transcription using unnatural base pairs
    • DOI 10.1021/ja0542946
    • Kawai, R.; Kimoto, M.; Ikeda, S.; Mitsui, T.; Endo, M.; Yokoyama, S.; Hirao, I. Site-specific fluorescent labeling of RNA molecules by specific transcription using unnatural base pairs. J. Am. Chem. Soc. 2005, 127, 17286-17295. (Pubitemid 41791047)
    • (2005) Journal of the American Chemical Society , vol.127 , Issue.49 , pp. 17286-17295
    • Kawai, R.1    Kimoto, M.2    Ikeda, S.3    Mitsui, T.4    Endo, M.5    Yokoyama, S.6    Hirao, I.7
  • 21
    • 1142306164 scopus 로고    scopus 로고
    • Site-Specific Incorporation of a Photo-Crosslinking Component into RNA by T7 Transcription Mediated by Unnatural Base Pairs
    • DOI 10.1016/S1074-5521(03)00295-3
    • Kimoto, M.; Endo, M.; Mitsui, T.; Okuni, T.; Hirao, I.; Yokoyama, S. Site-specific incorporation of a photo-crosslinking component into RNA by T7 transcription mediated by unnatural base pairs. Chem. Biol. 2004, 11, 47-55. (Pubitemid 38203989)
    • (2004) Chemistry and Biology , vol.11 , Issue.1 , pp. 47-55
    • Kimoto, M.1    Endo, M.2    Mitsui, T.3    Okuni, T.4    Hirao, I.5    Yokoyama, S.6
  • 22
    • 26444610292 scopus 로고    scopus 로고
    • Site-specific biotinylation of RNA molecules by transcription using unnatural base pairs
    • Moriyama, K.; Kimoto, M.; Mitsui, T.; Yokoyama, S.; Hirao, I. Site-specific biotinylation of RNA molecules by transcription using unnatural base pairs. Nucleic Acids Res. 2005, 33, e129.
    • (2005) Nucleic Acids Res. , vol.33
    • Moriyama, K.1    Kimoto, M.2    Mitsui, T.3    Yokoyama, S.4    Hirao, I.5
  • 23
    • 37849014324 scopus 로고    scopus 로고
    • An efficient unnatural base pair for PCR amplification
    • Hirao, I.; Mitsui, T.; Kimoto, M.; Yokoyama, S. An efficient unnatural base pair for PCR amplification. J. Am. Chem. Soc. 2007, 129, 15549-15555.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 15549-15555
    • Hirao, I.1    Mitsui, T.2    Kimoto, M.3    Yokoyama, S.4
  • 24
    • 0037392256 scopus 로고    scopus 로고
    • Preventing nondesired RNA-primed RNA extension catalyzed by T7 RNA polymerase
    • DOI 10.1046/j.1432-1033.2003.03510.x
    • Nacheva, G. A.; Berzal-Herranz, A. Preventing nondesired RNA-primed RNA extension catalyzed by T7 RNA polymerase. Eur. J. Biochem. 2003, 270, 1458-1465. (Pubitemid 36459584)
    • (2003) European Journal of Biochemistry , vol.270 , Issue.7 , pp. 1458-1465
    • Nacheva, G.A.1    Berzal-Herranz, A.2
  • 25
    • 80053996915 scopus 로고    scopus 로고
    • Monitoring the site-specific incorporation of dual fluorophore-quencher base analogues for target DNA detection by an unnatural base pair system
    • Yamashige, R.; Kimoto, M.; Mitsui, T.; Yokoyama, S.; Hirao, I. Monitoring the site-specific incorporation of dual fluorophore-quencher base analogues for target DNA detection by an unnatural base pair system. Org. Biomol. Chem. 2011, 9, 7504-7509.
    • (2011) Org. Biomol. Chem. , vol.9 , pp. 7504-7509
    • Yamashige, R.1    Kimoto, M.2    Mitsui, T.3    Yokoyama, S.4    Hirao, I.5


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