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Volumn 11, Issue 1, 2004, Pages 47-55

Site-Specific Incorporation of a Photo-Crosslinking Component into RNA by T7 Transcription Mediated by Unnatural Base Pairs

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EID: 1142306164     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2003.12.016     Document Type: Article
Times cited : (58)

References (43)
  • 1
    • 0003000419 scopus 로고    scopus 로고
    • Did the RNA world exploit an expanded genetic alphabet?
    • R.F. Gesteland, T.R. Cech, & J.F. Atkins. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Benner S.A., Burgstaller P., Battersby T.R., Jurczyk S. Did the RNA world exploit an expanded genetic alphabet? Gesteland R.F., Cech T.R., Atkins J.F. The RNA World. 1999;163-181 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1999) The RNA World , pp. 163-181
    • Benner, S.A.1    Burgstaller, P.2    Battersby, T.R.3    Jurczyk, S.4
  • 2
    • 0042848694 scopus 로고    scopus 로고
    • A novel, modification-dependent ATP-binding aptamer selected from an RNA library incorporating a cationic functionality
    • Vaish N.K., Larralde R., Fraley A.W., Szostak J.W., McLaughlin L.W. A novel, modification-dependent ATP-binding aptamer selected from an RNA library incorporating a cationic functionality. Biochemistry. 42:2003;8842-8851.
    • (2003) Biochemistry , vol.42 , pp. 8842-8851
    • Vaish, N.K.1    Larralde, R.2    Fraley, A.W.3    Szostak, J.W.4    McLaughlin, L.W.5
  • 3
    • 17344372249 scopus 로고    scopus 로고
    • Modified oligonucleotides: Synthesis and strategy for users
    • Verma S., Eckstein F. Modified oligonucleotides. synthesis and strategy for users Annu. Rev. Biochem. 67:1998;99-134.
    • (1998) Annu. Rev. Biochem. , vol.67 , pp. 99-134
    • Verma, S.1    Eckstein, F.2
  • 4
    • 0035206749 scopus 로고    scopus 로고
    • In vitro selection of RNA aptamers carrying multiple biotin groups in the side chains
    • Ito Y., Suzuki A., Kawazoe N., Imanishi Y. In vitro selection of RNA aptamers carrying multiple biotin groups in the side chains. Bioconjug. Chem. 12:2001;850-854.
    • (2001) Bioconjug. Chem. , vol.12 , pp. 850-854
    • Ito, Y.1    Suzuki, A.2    Kawazoe, N.3    Imanishi, Y.4
  • 5
    • 0035897140 scopus 로고    scopus 로고
    • Phe nucleotides containing the subunits of Thermus thermophilus phenylalanyl-tRNA synthetase by photoaffinity crosslinking
    • Phe nucleotides containing the subunits of Thermus thermophilus phenylalanyl-tRNA synthetase by photoaffinity crosslinking. Biochim. Biophys. Acta. 1518:2001;226-236.
    • (2001) Biochim. Biophys. Acta , vol.1518 , pp. 226-236
    • Moor, N.A.1    Ankilova, V.N.2    Lavrik, O.I.3    Favre, A.4
  • 6
    • 0034284164 scopus 로고    scopus 로고
    • Expanding the structural and functional diversity of RNA: Analog uridine triphosphates as candidates for in vitro selection of nucleic acids
    • Vaish N.K., Fraley A.W., Szostak J.W., McLaughlin L.W. Expanding the structural and functional diversity of RNA. analog uridine triphosphates as candidates for in vitro selection of nucleic acids Nucleic Acids Res. 28:2000;3316-3322.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3316-3322
    • Vaish, N.K.1    Fraley, A.W.2    Szostak, J.W.3    McLaughlin, L.W.4
  • 8
    • 0029557118 scopus 로고
    • Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands
    • Jensen K.B., Atkinson B.L., Willis M.C., Koch T.H., Gold L. Using in vitro selection to direct the covalent attachment of human immunodeficiency virus type 1 Rev protein to high-affinity RNA ligands. Proc. Natl. Acad. Sci. USA. 92:1995;12220-12224.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 12220-12224
    • Jensen, K.B.1    Atkinson, B.L.2    Willis, M.C.3    Koch, T.H.4    Gold, L.5
  • 9
    • 0025912789 scopus 로고
    • A specific, UV-induced RNA-protein cross-link using 5-bromouridine- substituted RNA
    • Gott J.M., Willis M.C., Koch T.H., Uhlenbeck O.C. A specific, UV-induced RNA-protein cross-link using 5-bromouridine-substituted RNA. Biochemistry. 30:1991;6290-6295.
    • (1991) Biochemistry , vol.30 , pp. 6290-6295
    • Gott, J.M.1    Willis, M.C.2    Koch, T.H.3    Uhlenbeck, O.C.4
  • 10
    • 0000477103 scopus 로고
    • Enzymatic synthesis of biotin-labeled polynucleotides: Novel nucleic acid affinity probes
    • Langer P.R., Waldrop A.A., Ward D.C. Enzymatic synthesis of biotin-labeled polynucleotides. novel nucleic acid affinity probes Proc. Natl. Acad. Sci. USA. 78:1981;6633-6637.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 6633-6637
    • Langer, P.R.1    Waldrop, A.A.2    Ward, D.C.3
  • 11
    • 0027492904 scopus 로고
    • Enzymatic recognition of the base pair between isocytidine and isoguanosine
    • Switzer C.Y., Moroney S.E., Benner S.A. Enzymatic recognition of the base pair between isocytidine and isoguanosine. Biochemistry. 32:1993;10489-10496.
    • (1993) Biochemistry , vol.32 , pp. 10489-10496
    • Switzer, C.Y.1    Moroney, S.E.2    Benner, S.A.3
  • 12
    • 0025008851 scopus 로고
    • Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet
    • Piccirilli J.A., Krauch T., Moroney S.E., Benner S.A. Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet. Nature. 343:1990;33-37.
    • (1990) Nature , vol.343 , pp. 33-37
    • Piccirilli, J.A.1    Krauch, T.2    Moroney, S.E.3    Benner, S.A.4
  • 13
    • 0000615415 scopus 로고
    • 6-(6-aminohexyl)isoguanosine, into RNA
    • 6-(6-aminohexyl)isoguanosine, into RNA. J. Am. Chem. Soc. 115:1993;4461-4467.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 4461-4467
    • Tor, Y.1    Dervan, P.B.2
  • 14
    • 0038450208 scopus 로고    scopus 로고
    • C-5 modified nucleosides: Direct insertion of alkynyl-thio functionality in pyrimidines
    • Held H.A., Roychowdhury A., Benner S.A. C-5 modified nucleosides. Direct insertion of alkynyl-thio functionality in pyrimidines Nucleosides Nucleotides Nucleic Acids. 22:2003;391-404.
    • (2003) Nucleosides Nucleotides Nucleic Acids , vol.22 , pp. 391-404
    • Held, H.A.1    Roychowdhury, A.2    Benner, S.A.3
  • 15
    • 0036713391 scopus 로고    scopus 로고
    • Challenging artificial genetic systems: Thymidine analogs with 5-position sulfur functionality
    • Held H.A., Benner S.A. Challenging artificial genetic systems. thymidine analogs with 5-position sulfur functionality Nucleic Acids Res. 30:2002;3857-3869.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3857-3869
    • Held, H.A.1    Benner, S.A.2
  • 16
    • 0035953049 scopus 로고    scopus 로고
    • Synthesis of a modified thymidine monomer for site-specific incorporation of reporter groups into oligonucleotides
    • Brown L.J., May J.P., Brown T. Synthesis of a modified thymidine monomer for site-specific incorporation of reporter groups into oligonucleotides. Tetrahedron Lett. 42:2001;2587-2591.
    • (2001) Tetrahedron Lett. , vol.42 , pp. 2587-2591
    • Brown, L.J.1    May, J.P.2    Brown, T.3
  • 17
    • 0032476840 scopus 로고    scopus 로고
    • Expanding the potential of DNA for binding and catalysis: Highly functionalized dUTP derivatives that are substrates for thermostable DNA polymerases
    • Sakthivel K., Barbas C.F. III. Expanding the potential of DNA for binding and catalysis. highly functionalized dUTP derivatives that are substrates for thermostable DNA polymerases Angew. Chem. Int. Ed. Engl. 37:1998;2872-2875.
    • (1998) Angew. Chem. Int. Ed. Engl. , vol.37 , pp. 2872-2875
    • Sakthivel, K.1    Barbas III, C.F.2
  • 18
    • 0029161984 scopus 로고
    • New uridine derivatives for systematic evolution of RNA ligands by exponential enrichment
    • Dewey T.M., Mundt A.A., Crouch G.J., Zyzniewski M.C., Eaton B.E. New uridine derivatives for systematic evolution of RNA ligands by exponential enrichment. J. Am. Chem. Soc. 117:1995;8474-8475.
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 8474-8475
    • Dewey, T.M.1    Mundt, A.A.2    Crouch, G.J.3    Zyzniewski, M.C.4    Eaton, B.E.5
  • 19
    • 0028124707 scopus 로고
    • 5-Heteroaryl-2′-deoxyuridine analogs. Synthesis and incorporation into high-affinity oligonucleotides
    • Gutierrez A.J., Terhorst T.J., Matteucci M.D., Froehler B.C. 5-Heteroaryl-2′-deoxyuridine analogs. Synthesis and incorporation into high-affinity oligonucleotides. J. Am. Chem. Soc. 116:1994;5540-5544.
    • (1994) J. Am. Chem. Soc. , vol.116 , pp. 5540-5544
    • Gutierrez, A.J.1    Terhorst, T.J.2    Matteucci, M.D.3    Froehler, B.C.4
  • 20
    • 0027418105 scopus 로고
    • Oligonucleotides derived from 5-(1-propynyl)-2′-O-allyl-cytidine: Synthesis and RNA duplex formation
    • Froehler B.C., Jones R.J., Cao X., Terhorst T.J. Oligonucleotides derived from 5-(1-propynyl)-2′-O-allyl-cytidine. synthesis and RNA duplex formation Tetrahedron Lett. 34:1993;1003-1006.
    • (1993) Tetrahedron Lett. , vol.34 , pp. 1003-1006
    • Froehler, B.C.1    Jones, R.J.2    Cao, X.3    Terhorst, T.J.4
  • 22
    • 27544440920 scopus 로고
    • Nucleic acid related compounds. 39. Efficient conversion of 5-iodo to 5-alkynyl and derived 5-substituted uracil bases and nucleosides
    • Robins M.J., Barr P.J. Nucleic acid related compounds. 39. Efficient conversion of 5-iodo to 5-alkynyl and derived 5-substituted uracil bases and nucleosides. J. Org. Chem. 48:1983;1854-1862.
    • (1983) J. Org. Chem. , vol.48 , pp. 1854-1862
    • Robins, M.J.1    Barr, P.J.2
  • 23
    • 0033579380 scopus 로고    scopus 로고
    • Structure of a transcribing T7 RNA polymerase initiation complex
    • Cheetham G.M.T., Steitz T.A. Structure of a transcribing T7 RNA polymerase initiation complex. Science. 286:1999;2305-2309.
    • (1999) Science , vol.286 , pp. 2305-2309
    • Cheetham, G.M.T.1    Steitz, T.A.2
  • 24
    • 0034697465 scopus 로고    scopus 로고
    • Synthesis of 3-(2-deoxy-β-D-ribofuranosyl)pyrimidin-2-one and 2-amino-6-(N,N-dimethylamino)-9-(2-deoxy-β-D-ribofuranosyl)purine derivatives for an unnatural base pair
    • Ishikawa M., Hirao I., Yokoyama S. Synthesis of 3-(2-deoxy-β-D- ribofuranosyl)pyrimidin-2-one and 2-amino-6-(N,N-dimethylamino)-9-(2-deoxy- β-D-ribofuranosyl)purine derivatives for an unnatural base pair. Tetrahedron Lett. 41:2000;3931-3934.
    • (2000) Tetrahedron Lett. , vol.41 , pp. 3931-3934
    • Ishikawa, M.1    Hirao, I.2    Yokoyama, S.3
  • 26
    • 0035921119 scopus 로고    scopus 로고
    • Synthesis of 6-(2-thienyl)purine nucleoside derivatives that form unnatural base pairs with pyrimidin-2-one nucleosides
    • Fujiwara T., Kimoto M., Sugiyama H., Hirao I., Yokoyama S. Synthesis of 6-(2-thienyl)purine nucleoside derivatives that form unnatural base pairs with pyrimidin-2-one nucleosides. Bioorg. Med. Chem. Lett. 11:2001;2221-2223.
    • (2001) Bioorg. Med. Chem. Lett. , vol.11 , pp. 2221-2223
    • Fujiwara, T.1    Kimoto, M.2    Sugiyama, H.3    Hirao, I.4    Yokoyama, S.5
  • 28
    • 0031792598 scopus 로고    scopus 로고
    • Efficient replication between non-hydrogen-bonded nucleoside shape analogs
    • Morales J.C., Kool E.T. Efficient replication between non-hydrogen-bonded nucleoside shape analogs. Nat. Struct. Biol. 5:1998;950-954.
    • (1998) Nat. Struct. Biol. , vol.5 , pp. 950-954
    • Morales, J.C.1    Kool, E.T.2
  • 29
    • 0033578081 scopus 로고    scopus 로고
    • A specific partner for abasic damage in DNA
    • Matray T.J., Kool E.T. A specific partner for abasic damage in DNA. Nature. 399:1999;704-708.
    • (1999) Nature , vol.399 , pp. 704-708
    • Matray, T.J.1    Kool, E.T.2
  • 30
    • 84982076000 scopus 로고
    • The iodination of monohydroxypyridines to monohydroxyiodopyridines
    • Broekman F.W., Tendeloo H.J.C. The iodination of monohydroxypyridines to monohydroxyiodopyridines. Recueil. 81:1962;107-111.
    • (1962) Recueil , vol.81 , pp. 107-111
    • Broekman, F.W.1    Tendeloo, H.J.C.2
  • 31
    • 0037955524 scopus 로고    scopus 로고
    • An unnatural hydrophobic base pair with shape complementarity between pyrrole-2-carbaldehyde and 9-methylimidazo[(4,5)-b]pyridine
    • Mitsui T., Kitamura A., Kimoto M., To T., Sato A., Hirao I., Yokoyama S. An unnatural hydrophobic base pair with shape complementarity between pyrrole-2-carbaldehyde and 9-methylimidazo[(4,5)-b]pyridine. J. Am. Chem. Soc. 125:2003;5298-5307.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 5298-5307
    • Mitsui, T.1    Kitamura, A.2    Kimoto, M.3    To, T.4    Sato, A.5    Hirao, I.6    Yokoyama, S.7
  • 35
    • 0037143649 scopus 로고    scopus 로고
    • Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli
    • Chin J.W., Martin A.B., King D.S., Wang L., Schultz P.G. Addition of a photocrosslinking amino acid to the genetic code of Escherichia coli. Proc. Natl. Acad. Sci. USA. 99:2002;11020-11024.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11020-11024
    • Chin, J.W.1    Martin, A.B.2    King, D.S.3    Wang, L.4    Schultz, P.G.5
  • 36
    • 0042631224 scopus 로고    scopus 로고
    • Rna lego: Magnesium-dependent formation of specific rna assemblies through kissing interactions
    • Horiya S., Li X., Kawai G., Saito R., Katoh A., Kobayashi K., Harada K. Rna lego. magnesium-dependent formation of specific rna assemblies through kissing interactions Chem. Biol. 10:2003;645-654.
    • (2003) Chem. Biol. , vol.10 , pp. 645-654
    • Horiya, S.1    Li, X.2    Kawai, G.3    Saito, R.4    Katoh, A.5    Kobayashi, K.6    Harada, K.7
  • 37
    • 0034679465 scopus 로고    scopus 로고
    • Tecto-RNA: One-dimensional self-assembly through tertiary interactions
    • Jaeger L., Leontis N.B. Tecto-RNA. one-dimensional self-assembly through tertiary interactions Angew. Chem. Int. Ed. Engl. 39:2000;2521-2524.
    • (2000) Angew. Chem. Int. Ed. Engl. , vol.39 , pp. 2521-2524
    • Jaeger, L.1    Leontis, N.B.2
  • 38
    • 0032490948 scopus 로고    scopus 로고
    • Design and self-assembly of two-dimensional DNA crystals
    • Winfree E., Liu F., Wenzler L.A., Seeman N.C. Design and self-assembly of two-dimensional DNA crystals. Nature. 394:1998;539-544.
    • (1998) Nature , vol.394 , pp. 539-544
    • Winfree, E.1    Liu, F.2    Wenzler, L.A.3    Seeman, N.C.4
  • 39
    • 0036043690 scopus 로고    scopus 로고
    • Structure and function of phi29 hexameric RNA that drives the viral DNA packaging motor: Review
    • Guo P. Structure and function of phi29 hexameric RNA that drives the viral DNA packaging motor. review Prog. Nucleic Acid Res. Mol. Biol. 72:2002;415-472.
    • (2002) Prog. Nucleic Acid Res. Mol. Biol. , vol.72 , pp. 415-472
    • Guo, P.1
  • 40
    • 0036669413 scopus 로고    scopus 로고
    • Dimensionality is the issue: Use of photoaptamers in protein microarrays
    • Petach H., Gold L. Dimensionality is the issue. use of photoaptamers in protein microarrays Curr. Opin. Biotechnol. 13:2002;309-314.
    • (2002) Curr. Opin. Biotechnol. , vol.13 , pp. 309-314
    • Petach, H.1    Gold, L.2
  • 42
    • 0031021689 scopus 로고    scopus 로고
    • Synthesis of 3-(β-D-ribofuranosyl)-2-fluoropyridine and 3-(β-D-ribofuranosyl)-pyridin-2-one
    • Matulic-Adamic J., Beigelman L. Synthesis of 3-(β-D-ribofuranosyl)- 2-fluoropyridine and 3-(β-D-ribofuranosyl)-pyridin-2-one. Tetrahedron Lett. 38:1997;203-206.
    • (1997) Tetrahedron Lett. , vol.38 , pp. 203-206
    • Matulic-Adamic, J.1    Beigelman, L.2
  • 43
    • 0023748537 scopus 로고
    • Simple synthesis of 5-vinyl- and 5-ethynyl-2′-deoxyuridine- 5′-triphosphates
    • Kovács T., Ötvös L. Simple synthesis of 5-vinyl- and 5-ethynyl-2′-deoxyuridine-5′-triphosphates. Tetrahedron Lett. 29:1988;4525-4528.
    • (1988) Tetrahedron Lett. , vol.29 , pp. 4525-4528
    • Kovács, T.1    Ötvös, L.2


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