Fiducial markers for combined 3-dimensional mass spectrometric and optical tissue imaging

Analytical Chemistry

Volumn 84, Issue 4, 2012, Pages 1817-1823

  Chughtai, Kamila ^a   Jiang, Lu ^b   Greenwood, Tiffany R ^b   Klinkert, Ivo ^a   Van Hove, Erika R Amstalden ^a   Heeren, Ron M A ^a,c   Glunde, Kristine ^b,d  

^a FOM INSTITUTE AMOLF   (Netherlands)

^b JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c NETHERLANDS PROTEOMICS CENTRE   (Netherlands)

^d JOHNS HOPKINS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

3-DIMENSIONAL; BIOLOGICAL SAMPLES; BIOLOGICAL SURFACES; BREAST TUMOR; BROMOPHENOL BLUE; COREGISTERED; COREGISTRATION; CRESYL VIOLET; DATA SETS; FIDUCIAL MARKER; FLUORESCENT PROTEIN; IMAGING MODALITY; MICROSCOPIC IMAGE; MOLECULAR COMPOSITIONS; MOLECULAR PROPERTIES; MULTI-MODAL; MULTI-MODAL APPROACH; OPTICAL TISSUE IMAGING; TISSUE SECTIONS;

FLUORESCENCE; IMAGING TECHNIQUES; MOLECULAR IMAGING; TISSUE;

MASS SPECTROMETERS;

AZO COMPOUND; BROMOPHENOL BLUE; CRESYL VIOLET; OXAZINE DERIVATIVE; PONCEAU S; TUMOR MARKER;

ANIMAL; ARTICLE; BREAST TUMOR; COMPUTER ASSISTED DIAGNOSIS; COMPUTER ASSISTED TOMOGRAPHY; FEMALE; HUMAN; IMAGE PROCESSING; MASS SPECTROMETRY; METABOLISM; MOUSE; PATHOLOGY; THREE DIMENSIONAL IMAGING; TUMOR CELL CULTURE; XENOGRAFT;

ANIMALS; AZO COMPOUNDS; BREAST NEOPLASMS; BROMPHENOL BLUE; FEMALE; HUMANS; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MASS SPECTROMETRY; MICE; OXAZINES; TOMOGRAPHY, X-RAY COMPUTED; TRANSPLANTATION, HETEROLOGOUS; TUMOR CELLS, CULTURED; TUMOR MARKERS, BIOLOGICAL;

EID: 84858823600     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac203373h     Document Type: Article

References (27)

1. Amstalden van Hove, E. R.; Blackwell, T. R.; Klinkert, I.; Eijkel, G. B.; Heeren, R. M.; Glunde, K. Cancer Res. 2010, 70, 9012-9021.
2. Sinha, T. K.; Khatib-Shahidi, S.; Yankeelov, T. E.; Mapara, K.; Ehtesham, M.; Cornett, D. S.; Dawant, B. M.; Caprioli, R. M.; Gore, J. C. Nat. Methods 2008, 5, 57-59.
3. Altelaar, A. F.; Luxembourg, S. L.; McDonnell, L. A.; Piersma, S. R.; Heeren, R. M. A. Nat. Protoc 2007, 2, 1185-1196.
4. Djidja, M. C.; Claude, E.; Snel, M. F.; Scriven, P.; Francese, S.; Carolan, V.; Clench, M. R. J. Proteome Res. 2009, 8, 4876-4884.
5. Khatib-Shahidi, S.; Andersson, M.; Herman, J. L.; Gillespie, T. A.; Caprioli, R. M. Anal. Chem. 2006, 78, 6448-6456.
6. Chughtai, K.; Heeren, R. M. A. Chem. Rev. 2010, 110, 3237-3277.
7. Shaner, N. C. Nat. Biotechnol. 2004, 22, 1567-1572.
8. Winnard, P. T. Jr.; Kluth, J. B.; Raman, V. Neoplasia 2006, 8, 796-806.
9. Kakkad, S. M.; Solaiyappan, M.; O'Rourke, B.; Stasinopoulos, I.; Ackerstaff, E.; Raman, V.; Bhujwalla, Z. M.; Glunde, K. Neoplasia 2010, 12, 608-617.
10. Eberlin, L. S.; Ifa, D. R.; Wu, C.; Cooks, R. G. Angew. Chem., Int. Ed. 2010, 49, 873-876.
11. Chen, R.; Hui, L.; Sturm, R. M.; Li, L. J. Am. Soc. Mass Spectrom. 2009, 20, 1068-1077.
12. Andersson, M.; Groseclose, M. R.; Deutch, A. Y.; Caprioli, R. M. Nat. Methods 2008, 5, 101-108.
13. Sidman, R. L.; Kosaras, B.; Misra, B.; Senft, S. 2004.
14. Crecelius, A. C.; Cornett, D. S.; Caprioli, R. M.; Williams, B.; Dawant, B. M.; Bodenheimer, B. J. Am. Soc. Mass Spectrom. 2005, 16, 1093-1099.
15. Lazebnik, R. S.; Lancaster, T. L.; Breen, M. S.; Lewin, J. S.; Wilson, D. L. IEEE Trans. Med. Imaging 2003, 22, 653-660
16. Breen, M. S.; Lazebnik, R. S.; Wilson, D. L. Ann. Biomed. Eng. 2005, 33, 1100-1112
17. Humm, J. L.; Ballon, D.; Hu, Y. C.; Ruan, S.; Chui, C.; Tulipano, P. K.; Erdi, A.; Koutcher, J.; Zakian, K.; Urano, M.; Zanzonico, P.; Mattis, C.; Dyke, J.; Chen, Y.; Harrington, P.; O'Donoghue, J. A.; Ling, C. C. Med. Phys. 2003, 30, 2303-2314.
18. Breen, M. S.; Lancaster, T. L.; Wilson, D. L. Comput. Med. Imaging Graphics 2005, 29, 405-417
19. McGrath, D. M.; Vlad, R. M.; Foltz, W. D.; Brock, K. K. Med. Phys. 2010, 37, 2321-2328.
20. Rouviere, O.; Reynolds, C.; Le, Y.; Lai, J.; Roberts, L. R.; Felmlee, J. P.; Ehman, R. L. J. Magn. Reson. Imaging 2006, 23, 50-59.
21. Raman, V.; Artemov, D.; Pathak, A. P.; Winnard, P. T. Jr.; McNutt, S.; Yudina, A.; Bogdanov, A. Jr.; Bhujwalla, Z. M. Cancer Res. 2006, 66, 9929-9936.
22. Glunde, K.; Shah, T.; Winnard, P. T. Jr.; Raman, V.; Takagi, T.; Vesuna, F.; Artemov, D.; Bhujwalla, Z. M. Cancer Res. 2008, 68, 172-180.
23. Jiang, L.; Greenwood, T. R.; Amstalden van Hove, E. R.; Chughtai, K.; Raman, V.; Winnard Jr., P.; Heeren, R. M. A.; Artemov, D.; Glunde, K. NMR Biomed. In press.
24. Xu, C.; Prince, J. L. IEEE Trans. Image Process. 1998, 7, 359-369.
25. Morrison, P. R.; Jolesz, F. A.; Charous, D.; Mulkern, R. V.; Hushek, S. G.; Margolis, R.; Fried, M. P. J. Magn. Reson. Imaging 1998, 8, 57-63.
26. Breen, M. S.; Lancaster, T. L.; Lazebnik, R. S.; Nour, S. G.; Lewin, J. S.; Wilson, D. L. J. Magn. Reson. Imaging 2003, 18, 90-102.
27. Hazle, J. D.; Diederich, C. J.; Kangasniemi, M.; Price, R. E.; Olsson, L. E.; Stafford, R. J. J. Magn. Reson. Imaging 2002, 15, 409-417.