Plasticity of the myelination genomic fabric

Molecular Genetics and Genomics

Volumn 287, Issue 3, 2012, Pages 237-246

  Iacobas, Sanda ^a   Thomas, Neil M ^a   Iacobas, Dumitru A ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

Calcium signaling; Cytokine receptor; Egr1; Scd2, Sox10

Indexed keywords

CALCIUM ION; CYTOKINE RECEPTOR;

ANIMAL CELL; ARTICLE; ASTROCYTE; CALCIUM SIGNALING; CELL IMMORTALIZATION; CELL STIMULATION; CONTROLLED STUDY; EMBRYO; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; MOUSE; MYELINATION; MYELINATION GENOMIC FABRIC; NERVE CELL PLASTICITY; NONHUMAN; OLIGODENDROGLIA; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; REGULATOR GENE; TRANSCRIPTOMICS; UPREGULATION;

ANIMALS; ASTROCYTES; CALCIUM SIGNALING; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENOME; HUMANS; MICE; MICE, INBRED C57BL; MYELIN SHEATH; OLIGODENDROGLIA; PARACRINE COMMUNICATION; RECEPTORS, CYTOKINE; TRANSCRIPTOME;

EID: 84858798947     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-012-0673-0     Document Type: Article

References (64)

1. Aguirre A, Dupree JL, Mangin JM, Gallo V (2007) A functional role for EGFR signaling in myelination and remyelination. Nat Neurosci 10(2007):990-1002 (Pubitemid 47185206)
2. Bajo-Grañeras R, Sanchez D, Gutierrez G, González C, Do Carmo S, Rassart E, Ganfornina MD (2011) Apolipoprotein D alters the early transcriptional response to oxidative stress in the adult cerebellum. J Neurochem 117:949-960
3. Banerjee S, Oldridge D, Poptsova M, Hussain WM, Chakravarty D, Demichelis F (2011) A computational framework discovers new copy number variants with functional importance. PLoS One 6(3):e17539
4. Bondurand N, Girard M, Pingault V, Lemort N, Dubourg O, Goossens M (2001) Human Connexin 32, a gap junction protein altered in the X-linked form of Charcot-Marie-Tooth disease, is directly regulated by the transcription factor SOX10. Hum Mol Genet 10:2783-2795 (Pubitemid 34026460)
5. Braitch M, Constantinescu CS (2010). The role of osteopontin in experimental autoimmune encephalomyelitis (EAE) and multiple sclerosis (MS). Inflamm Allergy Drug Targets. 9:249-256 (Review)
6. Cahoy JD, Emery B, Kaushal A, Foo LC, Zamanian JL, Christopherson KS, Xing Y, Lubischer JL, Krieg PA, Krupenko SA, Thompson WJ, Barres BA (2008) A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function. J Neurosci 28(1):264-278
7. Ceruti S, Viganò F, Boda E, Ferrario S, Magni G, Boccazzi M, Rosa P, Buffo A, Abbracchio MP (2011) Expression of the new P2Y-like receptor GPR17 during oligodendrocyte precursor cell maturation regulates sensitivity to ATP-induced death. Glia 59:363-378
8. Chen M, Nemechek NM, Mema E, Wang J, Weinstein LS (2011) Effects of deficiency of the G protein G(s)alpha on energy and glucose homeostasis. Eur J Pharmacol 660:119-124
9. Degletagne C, Keime C, Rey B, de Dinechin M, Forcheron F, Chuchana P, Jouventin P, Gautier C, Duchamp C (2010) Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays. BMC Genomics 11:344
10. Demarque M, Spitzer NC (2012) Neurotransmitter phenotype plasticity: An unexpected mechanism in the toolbox of network activity homeostasis. Dev Neurobiol 72(1):22-32
11. Draghici S (2003) Data analysis tools for DNA microarrays. Chapman & Hall/CRC, Boca Raton, London, New York, Washington, pp 264-276
12. Dugas JC, Tai YC, Speed TP, Ngai J, Barres BA (2006) Functional genomic analysis of oligodendrocyte differentiation. J Neurosci 26(43):10967-10983 (Pubitemid 44772187)
13. Easterday MC, Dougherty JD, Jackson RL, Ou J, Nakano I, Paucar AA, Roobini B, Dianati M, Irvin DK, Weissman IL, Terskikh AV, Geschwind DH, Kornblum HI (2003) Neural progenitor genes. Germinal zone expression and analysis of genetic overlap in stem cell populations. Dev Biol 264:309-322 (Pubitemid 37490971)
14. Emery B, Agalliu D, Cahoy JD, Watkins TA, Dugas JC, Mulinyawe SB, Ibrahim A, Ligon KL, Rowitch DH, Barres BA (2009) Myelin gene regulatory factor is a critical transcriptional regulator required for CNS myelination. Cell 138:172-185
15. Fields RD (2005) Myelination: an overlooked mechanism of synaptic plasticity? Neuroscientist 11:528-531
16. Fields RD (2008) White matter in learning, cognition and psychiatric disorders. Trends Neurosci 31:361-370
17. Finzsch M, Stolt CC, Lommes P, Wegner M (2008) Sox9 and Sox10 influence survival and migration of oligodendrocyte precursors in the spinal cord by regulating PDGF receptor alpha expression. Development 135(4):637-646 (Pubitemid 351405017)
18. Fitzner D, Schneider A, Kippert A, Möbius W, Willig KI, Hell SW, Bunt G, Gaus K, Simons M (2006) Myelin basic proteindependent plasma membrane reorganization in the formation of myelin. EMBO J 25:5037-5048 (Pubitemid 44658522)
19. Garbay B, Bauxis-Lagrave S, Boiron-Sargueil F, Elson G, Cassagne C (1997) Acetyl-CoA carboxylase gene expression in the developing mouse brain. Comparison with other genes involved in lipid biosynthesis. Brain Res Dev Brain Res 98:97-203
20. Garbay B, Boiron-Sargueil F, Shy M, Chbihi T, Jiang H, Kamholz J, Cassagne C (1998) Regulation of oleoyl-CoA synthesis in the peripheral nervous system: demonstration of a link with myelin synthesis. J Neurochem 71:1719-1726 (Pubitemid 28443046)
21. Gokhan S, Marin-Husstege M, Yung SY, Fontanez D, Casaccia- Bonnefil P, Mehler MF (2005) Combinatorial profiles of oligodendrocyte-selective classes of transcriptional regulators differentially modulate myelin basic protein gene expression. J Neurosci 25:8311-8321 (Pubitemid 41292126)
22. Hancock V, Vejborg RM, Klemm P (2010) Functional genomics of probiotic Escherichia coli Nissle 1917 and 83972, and UPEC strain CFT073: comparison of transcriptomes, growth and biofilm formation. Mol Genet Genomics 284(6):437-454
23. Iacobas S, Iacobas DA (2011) Astrocyte proximity modulates the myelination gene fabric of oligodendrocytes. Neuron Glia Biol 6:157-169
24. Iacobas DA, Iacobas S, Li WE, Zoidl G, Dermietzel R, Spray DC (2005a) Genes controlling multiple functional pathways are transcriptionally regulated in connexin43 null mouse heart. Physiol Genomics 20:211-223 (Pubitemid 40388521)
25. Iacobas DA, Iacobas S, Urban-Maldonado M, Spray DC (2005b) Sensitivity of the brain transcriptome to connexin ablation, Biochimica et Biofisica Acta 1711:183-196 (Review) (Pubitemid 40799293)
26. + wave spread in glia. Biophys J 90(1):24-41
27. Iacobas DA, Iacobas S, Spray DC (2007a) Connexin43 and the brain transcriptome of the newborn mice. Genomics 89(1):113-123 (Pubitemid 44856232)
28. Iacobas DA, Iacobas S, Spray DC (2007b) Connexin-dependent transcellular transcriptomic networks in mouse brain. Prog Biophys Mol Biol. 94(1-2):168-184 (Review)
29. Iacobas DA, Iacobas S, Urban-Maldonado M, Scemes E, Spray DC (2008) Similar transcriptomic alterations in Cx43 knock-down and knock-out astrocytes. Cell Commun Adhes 15(1):195-206
30. Iacobas DA, Iacobas S, Haddad GG (2010a) Heart rhythm genomic fabric in hypoxia. BiochemBiophys ResCommun 391:1769-1774
31. Iacobas, S. Iacobas, N. Thomas, Spray DC (2010a) Sex-dependent gene regulatory networks of the heart rhythm. Funct Integr Genomics 10:73-86
32. Joubert L, Foucault I, Sagot Y, Bernasconi L, Duval F, Alliod C, Frossard MJ, Pescini Gobert R, Curchod ML, Salvat C, Nichols A, Pouly S, Rommel C, Roach A, van Hooft Huijsduijnen R (2010) Chemical inducers and transcriptional markers of oligodendrocyte differentiation. J Neurosci Res 88:2546-2557
33. Jung M, Krämer E, Grzenkowski M, Tang K, Blakemore W, Aguzzi A, Khazaie K, Chlichlia K, von Blankenfeld G, Kettenmann H et al (1995) Lines of murine oligodendroglial precursor cells immortalized by an activated neu tyrosine kinase show distinct degrees of interaction with axons in vitro and in vivo. Eur J Neurosci 7:1245-1265
34. Kaya F, Belin S, Bourgeois P, Micaleff J, Blin O, Fontés M (2007) Ascorbic acid inhibits PMP22 expression by reducing cAMP levels. Neuromuscul Disord 17:248-253 (Pubitemid 46420772)
35. Kippert A, Trajkovic K, Fitzner D, Opitz L, Simons M (2008) Identification of Tmem10/Opalin as a novel marker for oligodendrocytes using gene expression profiling. BMC Neurosci 9:40
36. Kramer EM, Schardt A, Nave KA (2001) Membrane traffic in myelinating oligodendrocytes. Microsc Res Tech 52:656-671 (Pubitemid 32222193)
37. Lachtermacher S, Esporcatte BL, da Silva de Azevedo Fortes F, Rocha NN, Montalvão F, Costa PC, Belem L, Rabischoffisky A, Faria Neto HC, Vasconcellos R, Iacobas DA, Iacobas S, Spray DC, Thomas NM, Goldenberg RC, Campos de Carvalho AC (2011) Functional and transcriptomic recovery of infarcted mouse myocardium treated with bone marrow mononuclear cells. Stem Cell Rev (Epub ahead of print)
38. Lau P, Verrier JD, Nielsen JA, Johnson KR, Notterpek L, Hudson LD (2008) Identification of dynamically regulated microRNA and mRNA networks in developing oligodendrocytes. J Neurosci 28(45):11720-11730
39. Lee WP, TzouWS (2009) Computational methods for discovering gene networks from expression data. Brief Bioinform 10:408-423
40. Li H, Lu Y, Smith HK, Richardson WD (2007) Olig1 and Sox10 interact synergistically to drive myelin basic protein transcription in oligodendrocytes. J Neurosci 27:14375-14382
41. Mizuno T, Zhang G, Takeuchi H, Kawanokuchi J, Wang J, Sonobe Y, Jin S, Takada N, Komatsu Y, Suzumura A (2008) Interferongamma directly induces neurotoxicity through a neuron specific, calcium-permeable complex of IFN-gamma receptor and AMPA GluR1 receptor. FASEB J 22:1797-1806 (Pubitemid 351811457)
42. Moe KT, Chung JW, Cho YI, Moon JK, Ku JH, Jung JK, Lee J, Park YJ (2011) Sequence information on simple sequence repeats and single nucleotide polymorphisms through transcriptome analysis of mungbean. J Integr Plant Biol 53(1):63-73
43. Nash B, Ioannidou K, Barnett SC (2011a) Astrocyte phenotypes and their relationship to myelination. J Anat 219(1):44-52. doi: 10.1111/j.1469-7580.2010. 01330.x
44. Nash B, Thomson CE, Linington C, Arthur AT, McClure JD, McBride MW, Barnett SC (2011b) Functional duality of astrocytes in myelination. J Neurosci 31(37):13028-13038
45. Newberna J, Birchmeier C (2010) Nrg1/ErbB signaling networks in Schwann cell development and myelination. Semin Cell Dev Biol 21:922-928 (Review)
46. Nielsen JA, Maric D, Lau P, Barker JL, Hudson LD (2006) Identification of a novel oligodendrocyte cell adhesion protein using gene expression profiling. J Neurosci 26(39):9881-9891 (Pubitemid 44477150)
47. Orthmann-Murphy JL, Abrams CK, Scherer SS (2008) Gap junctions couple astrocytes and oligodendrocytes. J Mol Neurosci 35:101-116 (Review)
48. Palacios N, Sánchez-Franco F, Fernández M, Sánchez I, Villuendas G, Cacicedo L (2007) Opposite effects of two PKA inhibitors on cAMP inhibition of IGF-I-induced oligodendrocyte development: a problem of unspecificity? Brain Res 1178:1-11 (Pubitemid 47625351)
49. Pingault V, Bondurand N, Le Caignec C, Tardieu S, Lemort N, Dubourg O, Le Guern E, Goossens M, Boespflug-Tanguy O et al (2001) The SOX10 transcription factor: evaluation as a candidate gene for central and peripheral hereditary myelin disorders. J Neurol 248:496-499 (Pubitemid 32661504)
50. Raser JM, O'Shea EK (2005) Noise in gene expression: origins, consequences, and control. Science 309:2010-2013 (Pubitemid 41362308)
51. Rowe DD, Leonardo CC, Hall AA, Shahaduzzaman MD, Collier LA, Willing AE, Pennypacker KR (2010) Cord blood administration induces oligodendrocyte survival through alterations in gene expression. Brain Res 1366:172-188
52. Salzer JL (2003) Polarized domains of myelinated axons. Neuron 40(2):297-318 (Review)
53. Schaeren-Wiemers N, Schaefer C, Valenzuela DM, Yancopoulos GD, Schwab ME (1995) Identification of new oligodendrocyte- and myelin-specific genes by a differential screening approach. J Neurochem 65:10-22
54. Soares MB, Lima RS, Souza BS, Vasconcelos JF, Rocha LL, Dos Santos RR, Iacobas S, Goldenberg RC, Lisanti MP, Iacobas DA, Tanowitz HB, Spray DC, de Campos Carvalho AC (2011) Reversion of gene expression alterations in hearts of mice with chronic chagasic cardiomyopathy after transplantation of bone marrow cells. Cell Cycle 10:1448-1455
55. Spray DC, Iacobas DA (2007) Organizational principles of the connexin-related brain transcriptome. J Membr Biol 218(1-3): 39-47 (Pubitemid 350132122)
56. Stolt CC, Rehberg S, Ader M, Lommes P, Riethmacher D, Schachner M, Bartsch U, Wegner M (2002) Terminal differentiation of myelin-forming oligodendrocytes depends on the transcription factor Sox10. Genes Dev 16:165-170 (Pubitemid 34075809)
57. Swiss VA, Nguyen T, Dugas J, Ibrahim A, Barres B, Androulakis IP, Casaccia P (2011) Identification of a gene regulatory network necessary for the initiation of oligodendrocyte differentiation. PLoS One 6:e18088
58. Takada N, Kucenas S, Appel B (2010) Sox10 is necessary for oligodendrocyte survival following axon wrapping. Glia 58:996-1006
59. Trapp BD, Kidd GJ (2004) Structure of the myelinated axon. Elsevier, San Diego
60. Ulrich R, Kalkuhl A, Deschl U, Baumgärtner W (2010) Machine learning approach identifies new pathways associated with demyelination in a viral model of multiple sclerosis. J Cell Mol Med 14:434-448
61. Wakatsuki S, Yumoto N, Komatsu K, Araki T, Sehara-Fujisawa A (2009) Roles of meltrin-beta/ADAM19 in progression of Schwann cell differentiation and myelination during sciatic nerve regeneration. J Biol Chem 284:2957-2966
62. Wake H, Lee PR, Fields RD (2011) Control of local protein synthesis and initial events in myelination by action potentials. Science 333:1647-1651
63. Wei Q, Miskimins WK, Miskimins R (2004) Sox10 acts as a tissue-specific transcription factor enhancing activation of the myelin basic protein gene promoter by p27Kip1 and Sp1. J Neurosci Res 78:796-802 (Pubitemid 39657567)
64. Wu MC, Lin X (2009) Prior biological knowledge-based approaches for the analysis of genome-wide expression profiles using gene sets and pathways. Stat Methods Med Res 18:577-593